Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01392 ATGGAGAATTACGAAAAGGAAGGGAATGTGTGTAAGGTGTCGTCGGAGGTCGCTAGAGTTGGCCGTCAACAATGGTGGTTGGATGCCCTAGAGTTGGGCGCAGGAGGTGGTTATCAGAGGTTGTCATCGGAGGGGGTCCCTGGAGTTTGCCATCGAAGATCTAATCGTTCCTCTTTGTTTTCTGCAATGGCGGTCACCTCTTCCCCTCGCGAGGAGTATGTTTACATGGCCAAGCTTGCCGAGCAAGCTGAGCGCTATGAGGAGATGGTCGAGTTTATGGAGAAGGTCTCCGCCGCTACAGACAACGAGGAGCTCACCGTCGAGGAGCGGAACCTTCTCTCTGTTGCTTACAAGAATGTTATTGGAGCGCGTAGAGCCTCCTGGAGGATTATTTCCTCCATTGAACAGAAGGAGGAGAGCCGAGGGAATGATGATCATGTCTCCGTTATCCGAGAATACAGATCCAAGATCGAGACTGAGCTCTCCAACATCTGTGATGGGATCCTTAAGCTTCTTGACTCCCGTCTCATTTCCTCTGCTGCTTCTGGTGACTCCAAGGTGTTTTATCTCAAGATGAAGGGAGATTATCATAGATACCTTGCTGAATTCAAGACCGGAGCCGAGCGGAAGGAAGCTGCCGAAAGTACTCTCACTGCTTATAAATCTGCACAGGATATTGCAAATGCTGAACTTGCTCCTACTCACCCCATACGACTTGGGCTGGCTTTGAACTTCTCAGTGTTCTATTATGAGATTCTGAATTCCCCTGATCGTGCTTGCAGCCTTGCTAAACAGGCATTCGATGAAGCAATTGCTGAGTTGGATACACTGGGCGAGGAATCATACAAAGATAGCACTTTGATCATGCAACTTCTTCGTGACAACCTCACTCTATGGACTTCGGACATGCAGGATGATGGAGATGAGATTAAAGAAGCAGCTCCCAAACGTGACGATGAATAG 963 48.81 MENYEKEGNVCKVSSEVARVGRQQWWLDALELGAGGGYQRLSSEGVPGVCHRRSNRSSLFSAMAVTSSPREEYVYMAKLAEQAERYEEMVEFMEKVSAATDNEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNDDHVSVIREYRSKIETELSNICDGILKLLDSRLISSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKSAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACSLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGDEIKEAAPKRDDE 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27459767 27465588 + ClCG11G014230.2 Cla11g01392 285214

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01392 320 PRINTS 14-3-3 protein zeta signature 153 177 IPR000308 -
Cla11g01392 320 PRINTS 14-3-3 protein zeta signature 246 272 IPR000308 -
Cla11g01392 320 PRINTS 14-3-3 protein zeta signature 184 206 IPR000308 -
Cla11g01392 320 PRINTS 14-3-3 protein zeta signature 273 302 IPR000308 -
Cla11g01392 320 PRINTS 14-3-3 protein zeta signature 219 245 IPR000308 -
Cla11g01392 320 PRINTS 14-3-3 protein zeta signature 104 133 IPR000308 -
Cla11g01392 320 PANTHER 14-3-3-LIKE PROTEIN GF14 CHI-RELATED 65 315 - -
Cla11g01392 320 SUPERFAMILY 14-3-3 protein 69 302 IPR036815 -
Cla11g01392 320 ProSitePatterns 14-3-3 proteins signature 2. 282 301 IPR023409 -
Cla11g01392 320 ProSitePatterns 14-3-3 proteins signature 1. 110 120 IPR023409 -
Cla11g01392 320 SMART 1433_4 70 312 IPR023410 -
Cla11g01392 320 Coils Coil 76 96 - -
Cla11g01392 320 Gene3D - 50 314 IPR036815 -
Cla11g01392 320 Pfam 14-3-3 protein 76 300 IPR023410 -
Cla11g01392 320 PANTHER 14-3-3 PROTEIN 65 315 IPR000308 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01392 K06630 YWHAE; 14-3-3 protein epsilon - csv:101210822 494.967
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla08g01123 Cla11g01392 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01545 Cla-Chr7:32645947 Cla11g01392 Cla-Chr11:27459767 1.78E-158 dispersed
Cla08g01178 Cla-Chr8:24669651 Cla11g01392 Cla-Chr11:27459767 4.99E-135 dispersed
Cla11g01382 Cla-Chr11:27349996 Cla11g01392 Cla-Chr11:27459767 1.06E-106 dispersed
Cla11g01392 Cla-Chr11:27459767 Cla11g01412 Cla-Chr11:27684693 1.97E-124 dispersed
Cla11g01392 Cla-Chr11:27459767 Cla08g01123 Cla-Chr8:23987753 2.83E-175 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g442 . . Bda01g00893 Bda03g00486 . Bpe04g00439 . . Cmo05g00534 Cmo12g00129 Cma01g01616 Cma09g00568 Car01g01232 Car12g00154 Sed04g0158 Cpe06g00431 Cpe07g00142 Bhi04g00777 Tan02g2410 Cmetu03g2141 . Hepe10g0481 . Lcy13g1545 Cla08g01123 Cam08g1580 Cec08g1150 Cco08g1276 Clacu08g1281 . Cre08g1063 . . . . Lsi04g02246 Csa03g04457 Chy04g00245 Cme03g01852 Blo17g00112 Blo18g00127 . Bda13g01393 Bpe02g01128 Bpe14g00462 Bma01g01396 Bma02g00132 Sed05g1594 Cmo01g01661 Cmo09g00555 Cma12g00167 Cma05g00507 Car05g00457 Car09g00495 Cpe11g00447 Cpe02g00365 Bhi09g02451 Tan01g3801 Cmetu04g2791 . Hepe01g2137 Mch11g0676 . Cla11g01392 Cam11g1448 Cec11g1476 Cco11g1473 Clacu11g1607 Cmu11g1426 Cre11g1846 Lsi08g00980 Csa02g02163 Chy03g01354 Cme04g00274
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla08g01123 CCT 4 242 14-3-3 family AT4G09000 90.8 6.9e-119 424.1
Cla11g01392 CCT 67 304 14-3-3 family AT4G09000 90.3 3.4e-118 421.8
Cla07g01545 . 6 241 14-3-3 family AT4G09000 86.9 1.3e-112 403.3
Cla11g01412 . 11 257 14-3-3 family AT4G09000 73.7 2.1e-99 359.4
Cla08g01178 . 36 279 14-3-3 family AT4G09000 73.4 3.0e-98 355.5
Cla07g00262 . 7 238 14-3-3 family AT4G09000 72.6 5.0e-93 338.2
Cla05g02397 . 4 262 14-3-3 family AT4G09000 66.3 4.8e-88 321.6
Cla11g01382 CCT,ECH 74 292 14-3-3 family AT4G09000 71.9 1.5e-81 300.1
Cla08g01110 CCT,ECH 164 363 14-3-3 family AT4G09000 72.0 1.7e-80 296.6
Cla08g01043 . 4 259 14-3-3 family AT4G09000 52.3 2.1e-59 226.5
Cla11g01392 CCT 67 320 14-3-3 family AT1G78300 91.0 1.5e-124 442.6
Cla08g01123 CCT 6 252 14-3-3 family AT1G78300 92.3 5.8e-124 440.7
Cla07g01545 . 6 253 14-3-3 family AT1G78300 87.1 5.3e-117 417.5
Cla08g01178 . 44 280 14-3-3 family AT1G78300 75.5 1.7e-99 359.4
Cla11g01412 . 11 256 14-3-3 family AT1G78300 73.6 1.1e-98 356.7
Cla07g00262 . 7 246 14-3-3 family AT1G78300 71.5 2.8e-94 342.0
Cla05g02397 . 8 278 14-3-3 family AT1G78300 64.8 7.9e-89 323.9
Cla08g01110 CCT,ECH 164 366 14-3-3 family AT1G78300 71.9 9.4e-82 300.4
Cla11g01382 CCT,ECH 1 297 14-3-3 family AT1G78300 57.2 1.2e-81 300.1
Cla08g01043 . 8 259 14-3-3 family AT1G78300 52.8 4.2e-58 221.9
Cla07g01545 . 6 259 14-3-3 family AT5G38480 90.6 7.4e-124 440.3
Cla08g01123 CCT 6 252 14-3-3 family AT5G38480 85.8 1.1e-114 409.8
Cla11g01392 CCT 68 314 14-3-3 family AT5G38480 85.4 2.4e-114 408.7
Cla08g01178 . 43 284 14-3-3 family AT5G38480 74.0 3.5e-97 351.7
Cla11g01412 . 10 262 14-3-3 family AT5G38480 70.8 7.7e-97 350.5
Cla07g00262 . 7 244 14-3-3 family AT5G38480 72.9 1.2e-92 336.7
Cla05g02397 . 8 278 14-3-3 family AT5G38480 67.4 1.8e-90 329.3
Cla08g01110 CCT,ECH 155 368 14-3-3 family AT5G38480 73.1 6.4e-83 304.3
Cla11g01382 CCT,ECH 74 301 14-3-3 family AT5G38480 70.0 2.0e-81 299.3
Cla08g01043 . 8 259 14-3-3 family AT5G38480 54.7 5.2e-61 231.5
Cla08g01123 CCT 3 242 14-3-3 family AT1G35160 90.0 1.4e-118 422.9
Cla11g01392 CCT 66 304 14-3-3 family AT1G35160 89.5 7.1e-118 420.6
Cla07g01545 . 6 240 14-3-3 family AT1G35160 86.8 5.8e-112 401.0
Cla11g01412 . 11 256 14-3-3 family AT1G35160 74.4 3.3e-99 358.6
Cla08g01178 . 34 279 14-3-3 family AT1G35160 73.2 4.8e-98 354.8
Cla07g00262 . 2 237 14-3-3 family AT1G35160 71.4 1.3e-92 336.7
Cla05g02397 . 8 262 14-3-3 family AT1G35160 66.9 7.6e-88 320.9
Cla11g01382 CCT,ECH 74 292 14-3-3 family AT1G35160 71.5 1.4e-81 300.1
Cla08g01110 CCT,ECH 164 363 14-3-3 family AT1G35160 71.0 1.2e-80 297.0
Cla08g01043 . 8 259 14-3-3 family AT1G35160 52.4 5.7e-59 224.9
Cla07g01545 . 5 254 14-3-3 family AT5G16050 86.4 2.4e-117 418.7
Cla08g01123 CCT 3 253 14-3-3 family AT5G16050 79.3 1.2e-108 389.8
Cla11g01392 CCT 66 313 14-3-3 family AT5G16050 79.5 5.6e-106 380.9
Cla08g01178 . 43 281 14-3-3 family AT5G16050 71.1 2.1e-92 335.9
Cla11g01412 . 10 254 14-3-3 family AT5G16050 68.2 2.4e-88 322.4
Cla07g00262 . 1 238 14-3-3 family AT5G16050 66.3 2.7e-84 308.9
Cla05g02397 . 3 269 14-3-3 family AT5G16050 59.5 3.7e-81 298.5
Cla08g01110 CCT,ECH 164 366 14-3-3 family AT5G16050 72.4 1.4e-80 296.6
Cla11g01382 CCT,ECH 88 297 14-3-3 family AT5G16050 71.0 1.7e-78 289.7
Cla08g01178 . 34 279 14-3-3 family AT5G10450 85.8 4.4e-114 407.9
Cla11g01412 . 9 256 14-3-3 family AT5G10450 82.3 1.9e-109 392.5
Cla08g01123 CCT 3 268 14-3-3 family AT5G10450 73.3 8.3e-105 377.1
Cla11g01392 CCT 63 304 14-3-3 family AT5G10450 79.4 1.4e-104 376.3
Cla07g01545 . 7 259 14-3-3 family AT5G10450 74.0 3.5e-103 371.7
Cla07g00262 . 1 238 14-3-3 family AT5G10450 67.6 5.4e-88 321.2
Cla05g02397 . 3 262 14-3-3 family AT5G10450 60.8 1.3e-81 300.1
Cla08g01110 CCT,ECH 164 363 14-3-3 family AT5G10450 70.5 8.7e-78 287.3
Cla11g01382 CCT,ECH 74 292 14-3-3 family AT5G10450 66.2 4.7e-76 281.6
Cla07g01545 . 4 261 14-3-3 family AT3G02520 91.5 1.8e-128 455.7
Cla08g01123 CCT 6 252 14-3-3 family AT3G02520 87.1 8.3e-118 420.2
Cla11g01392 CCT 67 320 14-3-3 family AT3G02520 84.8 5.4e-117 417.5
Cla08g01178 . 43 281 14-3-3 family AT3G02520 75.7 7.8e-100 360.5
Cla11g01412 . 10 254 14-3-3 family AT3G02520 73.5 2.1e-97 352.4
Cla07g00262 . 4 238 14-3-3 family AT3G02520 71.7 1.7e-91 332.8
Cla05g02397 . 8 279 14-3-3 family AT3G02520 63.2 1.6e-89 326.2
Cla11g01382 CCT,ECH 74 295 14-3-3 family AT3G02520 71.0 9.6e-82 300.4
Cla08g01110 CCT,ECH 164 366 14-3-3 family AT3G02520 72.4 9.6e-82 300.4
Cla08g01043 . 8 259 14-3-3 family AT3G02520 53.1 4.6e-60 228.4
Cla08g01178 . 42 279 14-3-3 family AT5G65430 88.7 1.3e-115 412.9
Cla11g01412 . 9 257 14-3-3 family AT5G65430 80.7 8.2e-110 393.7
Cla11g01392 CCT 63 304 14-3-3 family AT5G65430 80.2 4.6e-105 377.9
Cla08g01123 CCT 8 242 14-3-3 family AT5G65430 80.5 8.7e-104 373.6
Cla07g01545 . 7 241 14-3-3 family AT5G65430 79.2 1.1e-103 373.2
Cla07g00262 . 1 238 14-3-3 family AT5G65430 69.3 2.1e-89 325.9
Cla05g02397 . 8 262 14-3-3 family AT5G65430 63.6 1.0e-83 307.0
Cla08g01110 CCT,ECH 164 363 14-3-3 family AT5G65430 72.5 5.7e-79 291.2
Cla11g01382 CCT,ECH 74 292 14-3-3 family AT5G65430 68.0 2.4e-77 285.8
Cla07g00262 . 1 242 14-3-3 family AT2G42590 82.6 6.4e-113 404.1
Cla05g02397 . 6 295 14-3-3 family AT2G42590 66.7 4.8e-100 361.3
Cla08g01110 CCT,ECH 155 367 14-3-3 family AT2G42590 78.4 1.3e-92 336.7
Cla11g01382 CCT,ECH 3 296 14-3-3 family AT2G42590 61.6 8.2e-92 334.0
Cla07g01545 . 8 248 14-3-3 family AT2G42590 73.0 1.4e-91 333.2
Cla08g01123 CCT 8 248 14-3-3 family AT2G42590 70.5 4.0e-91 331.6
Cla11g01392 CCT 70 307 14-3-3 family AT2G42590 71.4 2.0e-90 329.3
Cla08g01178 . 44 281 14-3-3 family AT2G42590 64.7 1.7e-81 299.7
Cla11g01412 . 11 254 14-3-3 family AT2G42590 63.9 1.9e-80 296.2
Cla08g01043 . 6 259 14-3-3 family AT2G42590 55.9 3.4e-66 248.8
Cla07g00262 . 6 242 14-3-3 family AT1G22300 78.5 1.9e-103 372.5
Cla05g02397 . 5 267 14-3-3 family AT1G22300 71.1 1.1e-98 356.7
Cla08g01110 CCT,ECH 155 367 14-3-3 family AT1G22300 80.8 3.9e-93 338.2
Cla07g01545 . 4 246 14-3-3 family AT1G22300 70.4 3.7e-91 331.6
Cla11g01382 CCT,ECH 74 299 14-3-3 family AT1G22300 76.1 6.3e-91 330.9
Cla08g01123 CCT 8 246 14-3-3 family AT1G22300 70.3 1.0e-88 323.6
Cla11g01392 CCT 70 307 14-3-3 family AT1G22300 69.3 2.5e-87 318.9
Cla11g01412 . 11 263 14-3-3 family AT1G22300 63.1 1.5e-79 293.1
Cla08g01178 . 44 281 14-3-3 family AT1G22300 64.7 3.2e-79 292.0
Cla08g01043 . 5 259 14-3-3 family AT1G22300 54.9 5.4e-66 248.1
Cla07g00262 . 6 244 14-3-3 family AT1G34760 82.0 5.3e-106 380.9
Cla05g02397 . 5 270 14-3-3 family AT1G34760 73.7 3.0e-101 365.2
Cla08g01110 CCT,ECH 155 368 14-3-3 family AT1G34760 79.9 6.7e-93 337.4
Cla11g01382 CCT,ECH 74 296 14-3-3 family AT1G34760 77.1 1.4e-90 329.7
Cla07g01545 . 4 250 14-3-3 family AT1G34760 70.9 1.2e-89 326.6
Cla08g01123 CCT 8 245 14-3-3 family AT1G34760 72.3 5.9e-89 324.3
Cla11g01392 CCT 70 311 14-3-3 family AT1G34760 69.4 5.0e-88 321.2
Cla08g01178 . 44 280 14-3-3 family AT1G34760 64.1 6.1e-78 287.7
Cla11g01412 . 11 256 14-3-3 family AT1G34760 61.8 1.8e-77 286.2
Cla08g01043 . 5 259 14-3-3 family AT1G34760 59.6 2.8e-70 262.3
Cla05g02397 . 2 277 14-3-3 family AT1G26480 79.7 5.1e-115 411.0
Cla07g00262 . 3 242 14-3-3 family AT1G26480 80.8 4.6e-108 387.9
Cla08g01123 CCT 8 259 14-3-3 family AT1G26480 72.3 4.2e-93 338.2
Cla08g01110 CCT,ECH 155 367 14-3-3 family AT1G26480 78.9 2.7e-92 335.5
Cla11g01392 CCT 70 309 14-3-3 family AT1G26480 73.8 1.4e-91 333.2
Cla07g01545 . 5 256 14-3-3 family AT1G26480 72.0 2.3e-91 332.4
Cla11g01382 CCT,ECH 3 296 14-3-3 family AT1G26480 62.9 1.1e-90 330.1
Cla11g01412 . 11 254 14-3-3 family AT1G26480 64.8 1.8e-80 296.2
Cla08g01178 . 44 277 14-3-3 family AT1G26480 66.2 2.4e-80 295.8
Cla08g01043 . 2 259 14-3-3 family AT1G26480 62.4 8.8e-75 277.3
Cla07g00262 . 6 236 14-3-3 family AT1G78220 51.3 1.1e-63 240.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000486 6 4 5 6 5 2 5 3 3 3 3 3 6 3 2 6 3 6 6 3 3 3 3 3 3 3 3 6 4 0 114
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01392 Cla_Chr11 FPKM 42.100643 53.119797 58.893356 52.507282 62.549614 62.663769 53.38998 24.485104 23.227407 24.67045