Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01404 ATGGCTCTGGTTCGTCTTCCTTGTTCCTCGTCTTCTTCATTCCTCCGCTCTAAACAACACCACCTGATTTTTCTCGCGCGTCTCTCATGTCCGCAAAATCCATCTTATCCCATCAATGGCGACTTCAATCTCTCTATTTCTCGCTCTTCTCCCTCTCTTCTTTCAACTTCCATCAGCCACAATCCTTTAATTTCAATTAGGGCTAAGAAAACCAGCAAGTTTATTTTCCAGTTCGCCTCAACCTCCCAAGACGAAGCAGTAGCGAGTTCGCCTTCTGATACTGAAGAATTTTCTCGAACTAGATTGCTTGCTCAGAATGTGCCTTGGAATTCTACTCCTGAGGACATTCGTTCTCTCTTTGAGAAATATGGTACTGTCCTGGACGTGGAGCTTTCAATGTATAACAAGATCAGAAACAGGGGCTTGGCGTTTGTCACTATGGGATCACCGGAGGAGGCCCTTGCTGCGCTTAACAATCTCGAATCGTATCTGCATTTTACTTTTGCTTCTTCTATGCTTTTGCATAAATTATTACAAGGGAACCAGGCGTTGACTAAAAAGTCAATGATCCTTTCCCGTATCAAACATGGACCTTCTGATTCATTTTGCCTCGCACTCCCAATTATTGCAATTGTTTCTGAGAAATTCCCATTTGAATTTGAGGGTCGGACTCTGAGGCTCAATTATGCTAAGCTTAAAAAGGAGAAACCTTCCTCTCCCGTGAAACCAAAACCAGTTACTTTTAATTTGTTTGTGGCAAATTTGCCATTTGAAGCAAGAGCGAAGGACCTCAGGGAGTTCTTTGATTCAGGAAGTGGTAATGTAGTTTCTGCACAAATTATTTTTCATGAGAATCCGAGAAGGTCTTCTGGATATGGTTTTGTTGCCTTCAAAACCAAGAAGGATGCTGAAGCAGCTATTTCTGAGTTCCAAGGGAAGATATTCATGGGGAGAGCACTTCGTATTGCACGTAGTAAGCAGTTTGTGAAACTTCCCTCAGAAGAGAAATCCCAATCTGAAGATACATCAACTGATGGTGTGGAGCTAGCCAATGCCACTGCTGAAGTTTAA 1071 42.67 MALVRLPCSSSSSFLRSKQHHLIFLARLSCPQNPSYPINGDFNLSISRSSPSLLSTSISHNPLISIRAKKTSKFIFQFASTSQDEAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYLHFTFASSMLLHKLLQGNQALTKKSMILSRIKHGPSDSFCLALPIIAIVSEKFPFEFEGRTLRLNYAKLKKEKPSSPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKIFMGRALRIARSKQFVKLPSEEKSQSEDTSTDGVELANATAEV 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27600184 27602146 - ClCG11G014360.1 Cla11g01404 285226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01404 356 PANTHER OS08G0483200 PROTEIN 1 163 - -
Cla11g01404 356 Gene3D - 229 348 IPR012677 -
Cla11g01404 356 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 248 327 IPR000504 GO:0003723
Cla11g01404 356 SUPERFAMILY RNA-binding domain, RBD 237 330 IPR035979 GO:0003676
Cla11g01404 356 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 219 346 - -
Cla11g01404 356 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 250 321 IPR000504 GO:0003723
Cla11g01404 356 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 161 IPR000504 GO:0003723
Cla11g01404 356 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 1 163 - -
Cla11g01404 356 Gene3D - 67 178 IPR012677 -
Cla11g01404 356 SMART rrm1_1 249 323 IPR000504 GO:0003723
Cla11g01404 356 SMART rrm1_1 101 172 IPR000504 GO:0003723
Cla11g01404 356 SUPERFAMILY RNA-binding domain, RBD 88 162 IPR035979 GO:0003676
Cla11g01404 356 MobiDBLite consensus disorder prediction 331 356 - -
Cla11g01404 356 CDD RRM_SF 106 160 - -
Cla11g01404 356 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 171 IPR000504 GO:0003723
Cla11g01404 356 PANTHER OS08G0483200 PROTEIN 219 346 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01404 - - - csv:101208444 450.284
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g01404 Cla-Chr11:27600184 Cla10g01734 Cla-Chr10:33170882 4.73E-14 dispersed
Cla11g01404 Cla-Chr11:27600184 Cla07g01374 Cla-Chr7:30871036 9.83E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g454 . Blo12g00716 . . Bpe02g00125 . . Bma01g02601 . . . . . . . Cpe06g00441 . . . . . . . . . . . . . . . . Cone7ag1262 . . Lsi04g02259 Csa03g04470 Chy04g00231 . . . Bda11g00780 . . . . . Sed13g2155 . . . . . Car09g00508 . Cpe02g00355 Bhi09g02471 Tan01g3820 Cmetu04g0043 . Hepe01g2151 Mch11g0689 . Cla11g01404 Cam11g1461 Cec11g1489 Cco11g1485 Clacu11g1622 Cmu11g1439 Cre11g1858 . . . Cme04g00257
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009555 1 1 2 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01404 Cla_Chr11 FPKM 0.0 0.0 0.0 0.0 0.595456 0.542748 0.184917 0.0 0.0 0.0