Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01406 ATGATTCCAATTATGGCAATAAGGAAGAAGAATCACGTTCTCACTTGCCAATTATTGTTACTTTTGTTGCCACTGCCGCCGCCGCCGGCCGCCGCGCAGGAAACCGGAGCCGGAACGATACCGATATCGTCGGAACCGGAGGTTAGTAAAAACATGGCGATTGCATTCGTTGCGCTGATTTCTGGCTTCTTCATCCTTGGCATCATCTCTATTTACACGCGCCGCTGCAGAGAGAGGAGGTTCCGAGGTGCAGGAATCGGAATAGGTAGCGGAGGTGGTGGCGGCGGCGTGCCGTGGAGGCCGTCGCGTGGACTCGATCCGGCGTTCATAGCGACATTTCCAACTTTTGTGTACTCGACGGTGAAAGGGCTGAAAATCGGGAAAAGCTCACTGGAATGTGCTGTTTGCTTGAATGAATTCGAAAATAGCGATAGCCTGCGTTTAATTCCGAATTGTAGCCATGTTTTTCACTCTGCTTGTGTTGATGCTTGGTTAGTTTCACACTCGACTTGCCCCGTTTGCAGAGCCAATCTTTGTCCTAAACCTGGTGAAGTAACATTGTCGATCGTTAATTTCGATCCGTCCACCGGCTCAGAAAGAATCGGAGTTGAACGGTCGCCGACGCCATCACCATCACCGCCAAACCACGTGTCGATTCCGATGGGGGATGACTGCCATGCCGGAGAAGGAGCGGCAACGGAGATAAATGCGATGAATCCAAGTCCGGTGGCGAACCGGAGTACACCGACGCGGTCGAGGTCACTGGGATGGCGGTTGAGCGGAATATTCCAGCGGTCTAACTCGACCGGGCATGAGCGGTTTACTCTAAGGTTACCGGAGGCAGTTCGGAGTCAGTTGATGAACTCGACGCTGAACCGGACCAGAAGCTGGGCGGAGTTGCCGAGAGTGCAGAGTTTGCGACGGGGATACCGGGGTGGAATCGGAGAAAATGGCGGGTGGAGGAATTTCCTACGGCGGACGTTTTCGGTTCCGGCGTCTGTAGTCGGAAGGGCTGCCGGAACCGATCCGGTGAATGAGGACTTCGGCGAACGATCGTTTGCGCGGCTGAGGCCAAGTGGAAATGGTCCGAGTACAACGGCGGATTAG 1107 54.29 MIPIMAIRKKNHVLTCQLLLLLLPLPPPPAAAQETGAGTIPISSEPEVSKNMAIAFVALISGFFILGIISIYTRRCRERRFRGAGIGIGSGGGGGGVPWRPSRGLDPAFIATFPTFVYSTVKGLKIGKSSLECAVCLNEFENSDSLRLIPNCSHVFHSACVDAWLVSHSTCPVCRANLCPKPGEVTLSIVNFDPSTGSERIGVERSPTPSPSPPNHVSIPMGDDCHAGEGAATEINAMNPSPVANRSTPTRSRSLGWRLSGIFQRSNSTGHERFTLRLPEAVRSQLMNSTLNRTRSWAELPRVQSLRRGYRGGIGENGGWRNFLRRTFSVPASVVGRAAGTDPVNEDFGERSFARLRPSGNGPSTTAD 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27613808 27614914 + ClCG11G014380.2 Cla11g01406 285228

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01406 368 PANTHER RING-H2 FINGER PROTEIN ATL11 16 304 - -
Cla11g01406 368 SUPERFAMILY RING/U-box 128 183 - -
Cla11g01406 368 MobiDBLite consensus disorder prediction 338 368 - -
Cla11g01406 368 CDD RING-H2_PA-TM-RING 132 175 - -
Cla11g01406 368 SMART ring_2 133 174 IPR001841 -
Cla11g01406 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 180 IPR013083 -
Cla11g01406 368 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Cla11g01406 368 Pfam Ring finger domain 132 175 IPR001841 -
Cla11g01406 368 PANTHER RING FINGER DOMAIN-CONTAINING 16 304 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01406 K10664 ATL6S; E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:2.3.2.27] - csv:101206673 546.199
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g01406 Cla-Chr11:27613808 Cla06g01384 Cla-Chr6:27338831 1.90E-24 dispersed
Cla02g01569 Cla-Chr2:30347714 Cla11g01406 Cla-Chr11:27613808 5.21E-59 transposed
Cla07g01061 Cla-Chr7:27190640 Cla11g01406 Cla-Chr11:27613808 1.32E-12 transposed
Cla09g01112 Cla-Chr9:12087470 Cla11g01406 Cla-Chr11:27613808 1.08E-25 transposed
Cla01g01813 Cla-Chr1:33030334 Cla11g01406 Cla-Chr11:27613808 3.58E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g460 . . Bda01g00896 Bda03g00477 . . . . Cmo05g00544 . . . . . Sed14g0990 Cpe06g00443 . Bhi04g00792 Tan02g2428 Cmetu05g0584 . Hepe10g0467 . Lcy13g1532 . . . . . . . . Cone7ag1259 Cone17ag1200 . Lsi04g02261 Csa03g04472 Chy04g00229 Cme03g01838 Blo17g00109 . . . Bpe02g01132 Bpe14g00468 . Bma02g00126 Sed06g1552 . Cmo09g00565 . Cma05g00516 Car05g00467 Car09g00510 Cpe11g00456 . Bhi09g02473 Tan01g3822 Cmetu04g1810 . Hepe01g2153 Mch11g0691 . Cla11g01406 Cam11g1463 Cec11g1491 Cco11g1487 Clacu11g1624 Cmu11g1441 Cre11g1860 Lsi08g00991 Csa02g02176 Chy03g01341 Cme04g00255
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002449 3 2 1 1 2 1 3 2 2 2 1 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01406 Cla_Chr11 FPKM 0.428177 0.55275 0.273444 0.396988 0.771413 0.684442 1.623584 0.0 0.0 0.0