Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01412 ATGGCGTCCGCCATCCCTGAAAACCTAACAAGGGAGCAGTATGTTTACCTTTCGAAGCTTTCCGAGCAAGCCGAGCGCTACGAGGAAATGGTTCAGTTCATGCAGAAGCTTGTACTGAGCTCCACTCCAGCCTCGGAGCTCACTGTCGAGGAGCGCAATCTCCTTTCCGTCGCATACAAAAATGTGATCGGTTCTCTCCGCGCGGCTTGGCGTATCGTATCCTCAATTGAACAGAAGGAAGAAGGAAGGAAGAACGAAGATCACGTTGTCCTTGTCAAGGATTACAGATCCAAGGTCGAGTCCGAGCTCACCGACGTCTGCGCCAGTATTTTGAAGCTGTTGGACTCCAATCTGATACCATCCTCATCCTCTGGTGAATCTAAGGTGTTCTACTTAAAGATGAAGGGAGATTACCATAGGTACCTGGCGGAGTTTAAGATCGGGGAGGAGAGGAAGTCCGCCGCCGAGGATACCATGCTAGCTTACAAGGCTGCTCAGTACCCCTCTTATAAATTCTATATTATGGAGGATATTGCAGCTGCCGATCTTGCACCAACGCATCCAATCAGGCTGGGCCTAGCACTAAATTTCTCTGTTTTTTACTTTGAGATCCTGAACCAGCCTGACAAAGCCTGTAGCATGGCCAAACAGGCATTTGAAGAAGCCATTGCGGAATTGGACACATTAGGTGAAGAATCATACAAGGATAGCACTCTAATCATGCAGCTCTTAAGAGACAATCTCACCCTTTGGACTTCTGATACACAGATTATCGGTCGGAGTTTGATTCCTTCTAGGGTTTCTCTGAGTTCTCTCTCGTCTCATGGAGGACTTCGCTTTTCACGATGGCAACGTCTGCGGTTTGCTCGAGAGCAGGCACATCAACTTTCGTCAAGATCCTACCTATGGTTTGCAGATGCACTCGTCATTCATCCAAAGACTCTCCCAGGAAAAGGAACTGGAGTGGCCTGGAATTCTAGTGGTTCGCTTTTGATATCTGGATCAGATGACACCCGGATAAACATCTGGAGCTATTCTGGTCGAAAACTATTGCACTCTGTGGATACTGGGCATTCTGCAAACATATTTTGTACAAAATTTGTTCCTGAAACGTCTGATGAGCTTGTGGTCTCAGGAGCTGGGGATGCAGAGGTGCGCTTGTTTAATTTATCTCGCTTACGTGGGAGAGGACAAGATGATAATCCCATATCTTCATCGGCTTTGTATCAGTGTCACACCAGAAGAGTAAAAAAATTAGCTCTTGATTTGCGGTGTGGAGCTAGGAGGTCATTGGCTGATCCTCCCAGACAAACCCTTGCTTTGAAATCCTGTGACGTTAGTTCCACTAGGCCTCATTTACTTCTGGTTGGTGGAAGTGATGCATTTGCACGGTTATATGATAGAAGGATGCTGCCGCCCTTGTCTTCCAGCCAGAAGAGGATGTCACCACCTCCCTGTGTTAACTACTTCTGTCCAATGCATCTCTCTGATCGGGTCCGATCGGGTTTGCATTTGACTCATGTTACTTTTAGTCCGAATGGAGAAGAGATTCTGCTTAGCTATAGTGGAGAACATGCATACTTGATGAATGTAAATCATGCTGGCCTAAGTACAATGCAGTATACATCAGGAGATGTTTCTAAGTTAATGAGCTTCACTCCTGTACTCAACGGATTGGAATTGCAGCATCCGGTTTCCAATCTATCTAATGGTTTGCCTTTAAATTGTGGTGTTAATGCAAAGCTTGATAAATGCAGAAAATTATTACAAATAGCTGAAAAATGCTTGGACGGTGGGAACTACTTTGGTGGAATAGAGGCATGCAATGAAATTTTGGATGGATATGGTCGTAATATTGGTGTTATTTTCAAGCACGATACATTATGCACACGTGCTGCCTTATTACTCAAGCGGAAGTGGAAGAATGATGTTCATATGGCCATAAGAGATTGTTATAGTGCTAGGAAAATGGATCATTCCTCTTTCAGAGCACATTACTACATGTGCGAAGCTCTATCGCAGCTGGGTAGACATAAGGAAGCCCTAGATTTTGCATTTGCTGCTCAGTGTTTAGCCCCATCTAACCCTGAAGTGGCAGAGAAGGTGGAAAGTGTAAAGAGGGAACTCGCAGCAGCTGAACTGGAAAAATCAAATAAAGGCAATGATGGAGCTCTAAGATCAGCACCGTTAGGTGGTGTATTATCATTAAGTGACTTTCTTTACCGCTCAGATGCAAATAGTGATGTTTCACAAGATGGGCTGAGATCAGAAAGAGAAGATTCTGATTATGATGAGGAGGTGGAGCTGGACTTTGAAACCTTATCAGGTGATGAAGCCCATGATGTCGATTCCAACGTTCTACATGGAAGTTTAAATCTTAGAATACATAGACGAGTTGATCCAGCAAGAGAAAGGGTTGGCCCAAATGGCTCCTGTGGGTCTCCTTCATCATCACAAAATGATGCAACACTTTATCAGCCGGAACCCGTCATTGATATGAAGCAAAGATATGTAGGTCATTGTAACATCGGAACTGATATTAAACAAGCCAGTTTTCTCGGCCAAAGAGTCCCGTCACTCATAGCCGGTGGAGCGGTCGGACCGCAGGCAGCCGACGTGTTGGCTGTAATAGAGAATAATCAGCGCAGACTCTGCCGTAATAGAGAAGCCATACTGCCTTTTGAAATTTTAGAGCGGTTTAGGATGCATGATTTCTCTGAAGGAAGCCTTCATCCATTTGAATGTGCTCAGAGTTGA 2757 45.05 MASAIPENLTREQYVYLSKLSEQAERYEEMVQFMQKLVLSSTPASELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEDHVVLVKDYRSKVESELTDVCASILKLLDSNLIPSSSSGESKVFYLKMKGDYHRYLAEFKIGEERKSAAEDTMLAYKAAQYPSYKFYIMEDIAAADLAPTHPIRLGLALNFSVFYFEILNQPDKACSMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDTQIIGRSLIPSRVSLSSLSSHGGLRFSRWQRLRFAREQAHQLSSRSYLWFADALVIHPKTLPGKGTGVAWNSSGSLLISGSDDTRINIWSYSGRKLLHSVDTGHSANIFCTKFVPETSDELVVSGAGDAEVRLFNLSRLRGRGQDDNPISSSALYQCHTRRVKKLALDLRCGARRSLADPPRQTLALKSCDVSSTRPHLLLVGGSDAFARLYDRRMLPPLSSSQKRMSPPPCVNYFCPMHLSDRVRSGLHLTHVTFSPNGEEILLSYSGEHAYLMNVNHAGLSTMQYTSGDVSKLMSFTPVLNGLELQHPVSNLSNGLPLNCGVNAKLDKCRKLLQIAEKCLDGGNYFGGIEACNEILDGYGRNIGVIFKHDTLCTRAALLLKRKWKNDVHMAIRDCYSARKMDHSSFRAHYYMCEALSQLGRHKEALDFAFAAQCLAPSNPEVAEKVESVKRELAAAELEKSNKGNDGALRSAPLGGVLSLSDFLYRSDANSDVSQDGLRSEREDSDYDEEVELDFETLSGDEAHDVDSNVLHGSLNLRIHRRVDPARERVGPNGSCGSPSSSQNDATLYQPEPVIDMKQRYVGHCNIGTDIKQASFLGQRVPSLIAGGAVGPQAADVLAVIENNQRRLCRNREAILPFEILERFRMHDFSEGSLHPFECAQS 918
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27684693 27705081 - ClCG11G014440.2 Cla11g01412 285234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01412 918 SUPERFAMILY WD40 repeat-like 319 533 IPR036322 GO:0005515
Cla11g01412 918 Coils Coil 17 37 - -
Cla11g01412 918 SMART WD40_4 347 389 IPR001680 GO:0005515
Cla11g01412 918 SMART WD40_4 427 467 IPR001680 GO:0005515
Cla11g01412 918 SMART WD40_4 308 344 IPR001680 GO:0005515
Cla11g01412 918 ProSiteProfiles Trp-Asp (WD) repeats profile. 322 353 IPR001680 GO:0005515
Cla11g01412 918 PANTHER WD AND TETRATRICOPEPTIDE REPEATS PROTEIN 1 322 420 - -
Cla11g01412 918 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 420 856 IPR045151 -
Cla11g01412 918 Coils Coil 695 722 - -
Cla11g01412 918 SUPERFAMILY 14-3-3 protein 10 254 IPR036815 -
Cla11g01412 918 SMART 1433_4 11 265 IPR023410 -
Cla11g01412 918 MobiDBLite consensus disorder prediction 798 823 - -
Cla11g01412 918 Pfam 14-3-3 protein 19 252 IPR023410 -
Cla11g01412 918 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 322 420 IPR045151 -
Cla11g01412 918 ProSitePatterns 14-3-3 proteins signature 1. 52 62 IPR023409 -
Cla11g01412 918 PRINTS 14-3-3 protein zeta signature 171 197 IPR000308 -
Cla11g01412 918 PRINTS 14-3-3 protein zeta signature 198 224 IPR000308 -
Cla11g01412 918 PRINTS 14-3-3 protein zeta signature 46 75 IPR000308 -
Cla11g01412 918 PRINTS 14-3-3 protein zeta signature 225 254 IPR000308 -
Cla11g01412 918 ProSitePatterns 14-3-3 proteins signature 2. 234 253 IPR023409 -
Cla11g01412 918 Gene3D - 2 260 IPR036815 -
Cla11g01412 918 Gene3D Tetratricopeptide repeat domain 577 725 IPR011990 GO:0005515
Cla11g01412 918 SUPERFAMILY TPR-like 582 701 IPR011990 GO:0005515
Cla11g01412 918 Gene3D - 273 557 IPR015943 GO:0005515
Cla11g01412 918 MobiDBLite consensus disorder prediction 746 765 - -
Cla11g01412 918 PANTHER WD AND TETRATRICOPEPTIDE REPEATS PROTEIN 1 420 856 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g00629 Cla-Chr11:7227677 Cla11g01412 Cla-Chr11:27684693 1.09E-08 dispersed
Cla11g01392 Cla-Chr11:27459767 Cla11g01412 Cla-Chr11:27684693 1.97E-124 dispersed
Cla02g02030 Cla-Chr2:35331524 Cla11g01412 Cla-Chr11:27684693 6.58E-07 transposed
Cla11g01412 Cla-Chr11:27684693 Cla08g01178 Cla-Chr8:24669651 7.50E-154 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01412 K11807 - csv:101206836 986.097