Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01421 ATGTTCCCAAAGCCCCACCACCAACCACCGCCCCATTCCCAGCCCTTTCCCCGTTCTTTTTCCGTCGCCGCCACTCCGCCGCCGCGTGATTCACCAGCCTCCGCCGATGAGGATTCCGCGGCCGGTCCCTCGCCTCTCGCTCACGCCATGGTTCTCAAAGAACCGACCTCCACCGGCGACGGAGCTTCCATCGAGGTTGTGCGCCGCCCCCGCGGCCGCCCGCCGGGATCCAAGAACAAGCCGAAGCCAGCGGCCGTCGTTGTCGCCGGCCGCGAGGCCGAGCCGGCGATGAGTCCTTATGTACTCGAAGTCCCCGGCGGCAGCGATGTCGTCGAATCGATTTCCCGATTTTGCCGCCGCAGAAACACAGGGCTCTGTATTCTCAACGCTTACGGAACCGTCGCTGACGTCACTCTCCGGCAACCGTCGTCGTCTCCGGTCAGTACAGTCACTTTCCATGGACGATTCGATATTCTATCCGTCTGCGCAACTTTTGTTCCTCACACGACGTCGTTTCCAATTCCTAATGGATTCACCATCACGCTAGCCGGACCGCAGGGCCAGATCTTCGGCGGCTTGGTTGCCGGATCTTTAATCGGCGTCGGAACCGTCTATGTTATAGCCGCTTCATTCAACAATCCGTCGTATCAGCGGCTGCCATCGGAGGATGAGGTCAGAAAATTAACCTTCAGCGATGTTGAAGAAGCTCACTCTCCGATCTCCGGCGGCAAAGATAGCGAAAACACCGCCGCAGCCGCCGCCACAGAGACCTGCGGTTTGCTGCCGATGTACAGCACTCACTCCTCTTCCGACGTAATTTGGACTCCGGCCGCCAGACAACCGCCTCCACCGCACCATCGTCAGTACTAA 870 59.77 MFPKPHHQPPPHSQPFPRSFSVAATPPPRDSPASADEDSAAGPSPLAHAMVLKEPTSTGDGASIEVVRRPRGRPPGSKNKPKPAAVVVAGREAEPAMSPYVLEVPGGSDVVESISRFCRRRNTGLCILNAYGTVADVTLRQPSSSPVSTVTFHGRFDILSVCATFVPHTTSFPIPNGFTITLAGPQGQIFGGLVAGSLIGVGTVYVIAASFNNPSYQRLPSEDEVRKLTFSDVEEAHSPISGGKDSENTAAAAATETCGLLPMYSTHSSSDVIWTPAARQPPPPHHRQY 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27769884 27770753 - ClCG11G014540.1 Cla11g01421 285243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01421 289 Gene3D - 98 237 - -
Cla11g01421 289 MobiDBLite consensus disorder prediction 1 84 - -
Cla11g01421 289 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 14 284 - -
Cla11g01421 289 SUPERFAMILY AF0104/ALDC/Ptd012-like 96 223 - -
Cla11g01421 289 MobiDBLite consensus disorder prediction 1 16 - -
Cla11g01421 289 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 213 IPR005175 -
Cla11g01421 289 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 14 284 IPR014476 GO:0003680
Cla11g01421 289 ProSiteProfiles PPC domain profile profile. 94 234 IPR005175 -
Cla11g01421 289 CDD DUF296 99 211 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01208 Cla-Chr3:25694792 Cla11g01421 Cla-Chr11:27769884 1.05E-38 dispersed
Cla11g01421 Cla-Chr11:27769884 Cla11g00643 Cla-Chr11:7363514 2.37E-42 dispersed
Cla11g01421 Cla-Chr11:27769884 Cla08g01168 Cla-Chr8:24555865 4.16E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01421 - - zju:107421268 285.034