Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01423 ATGGAGAACTTGGATGGAAAATCTTCAGATTCTACGCAATGCGTTCGCGTTGCTGTTAATATCAGACCTTTGATTACACCCGAGCTAATGGTTGGATGCACGGATTGTATTACAGTTGTGCCTGGCGAACCTCAGGTTCAAATTGGCTCACATGTATTCACATACGACAATGTGTATGGTAGTGCTGGATCACCATCTTATGCATTATACGACGATTGCGTTGCTCCACTAGTCGATGCATTATTTCAGGGTTATAACGCTACTGTTCTTGCTTATGGACAGACGGGGTCTGGAAAGACTTACACAATGGGGACGAATTATAGTGGTGAAGGAAGTAATGATGGAGTAATACCCAAAGTAATGGAAAAAATATTCAAAAAGGTCGAGACAAAGAAGGATTCTACCGAATTCTTGATCAGAGTATCATTTATTGAGATATTTAAGGAAGAAGTCTTTGATTTGCTTGATGCAAGTACTTGCCTTAACACAAAGGGTGAAGGGACAAAGCCTTTTGCTCCTCCACGAGTTCCAATACAAATACGAGAAACGGTTAATGGTGGAATCACACTTGTTGGCGTCACCGAGGCCGAAGTTCGCACCACAGAAGAAATGACATCTTACTTGTCTCGTGGTTCATTAGCACGTGCAACTGGAAGTACCAACATGAATAGCCAGTCAAGGTCAGAAATTCAAGAAGATATAGATTTGCGCACCTTCTATCATGCCATTAAAGATGCTATAATTATTAATCGATCACATGCCATATTTACTATTACCATGGAGCAAAAGAAGAAGCTTGGGCGAGGCATGTCTCATGATGATACATGTGACGACATTCTATGTGCTAAGCTCCACTTGGTGGATCTTGCCGGTTCTGAAAGAGCCAAACGAACAGGTGCTGATGGCATGCGCTTTAAAGAAGGCGTTCATATCAACAAGGGCCTTTTGGCACTTGGCAATGTCATAAGTGCATTGGGAGATGAGAAGAAACGAAGAGAAGGATGTCATGTTCCCTACCGTGATAGCAAGTTAACACTGTGGTGCCCTGTTTCACAAAGCATTCCAACTTGGCTAACCATTGGAGTTGAATTTACAGGATTCTCTTGGTGGCAACAGCAGAACAGTGATGATTGTCCTGCTGACTCAAATGCAGAGGAGACCTTAAACACGCTAAAATATGCTAATCGTGCTCGCAATATTCAAAATAAAGCAGTTATCAACCGAGATCCTGTAGGAGCTCAAATACAAAAAATGCGAAGTGAAATTGAGCAATTGCAAGCTGAGCTTTTATTCTATCGCGGTGATGCAACTTTACCATATGAGGAGCTGCAGATTCTAAAGCATAAAATATCATTACTTGAAGCAAGCAATGGAGAGTTGTTGCGGGAGCTTCAAGAACGTCGAGTCACTTGCGACCATTTGTCTCAGCGTGCTATTGATGCTCAGGTTGAAAAAGACAAACTTGCCATGATAATTGAATCCGTGCGGAATGGCAAATCTTTAGATGAGATTGAATCCAACTACGATAAGGATTGTGAATTGGTCAAGAGTTATGTTTCAAAAATTCAAGAGCTAGAAGGGGAGGTACTGAGATTGCAAAGCTTTAAGAGTTCAAAACACAGCCGATATGTAGATCTTGTGGAGTCTGATGATGATAGGCCGCAGTCTAGTAACATCTTATTTCCATGTTCAAATGAGCATTCGTTGGAATATGATCCCAAAGCTGTAGATATTTCAGATGGAATGGAAGATCATGAAAAGGAGCTTGAACATTCAACAATGCAAGAACGATTAGACAGGGAGCTAAAAGAATTGGATAAGAAACTTGAGCAGAAGGAGGCTGAAATGAAACGGTTTGCTGGTACGGATACCTCTGTTCTAAAACAACATTATGAAAAGAAGGTCCATGAATTGGAACAAGAAAAGAGAGCTTTACAGAAAGAGATCGAGGAACTTAGATGTAATCTTTCGAACATATCTTCTACATCTGATGATGGAGCGCAAAAGTTGAAGCAAGAATATCTGCAGAAACTAAATTTCCTAGAGACTCAGGTCTCGGAGTTGAAGAAGAAACAAGACGCTCAGGCTCAACTATTGAGACAGAAGCAAAAGAGTGATGAGGCAGCAAAAAGATTACAGGATGAGATCCACAGAATTAAGACCCAAAAGGTTCAACTTCAACACAAGATTAAACAGGAATCCGAGCAATTTAGATTATGGAAGGCTTCGAGAGAGAAGGAAGTTCTCCAGCTGAAGAAGGAGGGTAGGAGAAATGAATATGAGATGCACAAGCTCTTAGCTTTGAATCAAAGGCAGAAAATGGTCTTGCAACGAAAGACAGAAGAAGCCGCTCAGGCAACAAAAAGGCTTAAAGAGCTTTTAGAATCTCGAAAGGCAGCACGTGAATCTTCCGGTTTGTTAACTATTGGAGTTTGTATTCTATCTGCAGGTGGGGGATCAAATGGTCCTGGAATTCAGGCTCTAATGCAGAATATTGAGCACGAGCTTGAAGTTACAGTTAGGGTGCACGAGGTTCGTTCTGAATACGAACGTCAAATGGAAGAGAGGTCTAAAATGGCCAAGGAATTGGCTAAGCTTAAGGAGGAAGAAGATTTACACAGAGGAGCTAAGTTGAGTGATTGTACTCAAACAATGTCACCTGGTGCAAGAAATTCAAGAATTTTTGCCCTCGAAAACATGCTCGCTACATCATCCAGCTCTTTGGTTTCCATGGCTTCACATTTGTCAGAGGCAGAAGAGCGTGAGCGCGTTCTTGGTGGTAGGGGACGTTGGCATCAAGTGCGATCTTTAGCCGATGCAAAGAACATTATGAATTTTTTGATGAATTTAGCATCCTCTTCAAGTTTGTGGGGGTTGGCTTATTGTCGGTTTTCTAATGTCGATCGACCTCGTATTTTGTTTGAATATGAGTTTGCTTCTAGAGAGAAGGATTCAGAAATTAGAGAATTGAAACAAAAAATAGTGAATCTTAGTGGCATGCTGAAAAAATCAGAAGCGCAAAAGGCAGAACTTATTCATCAGAACTCGGTTTTGAAAAGATGTTCCCCGGTTAATAGCGGGGGGCATAACTACGATTTACGCAAGCAGGAGCATCGAAATTCTGTCGTCATACCTGCGGACATGGATACATCAGAATCAGATTATGCAGATCTTAGTTCAGATAGCGACGATATTAATTATGATTGGGAGAGATCCATGAAACGACGATTTGATAGGAAAAAAGTCTCTAAAGCTAAGGGTCGTTCAAGCATGGTTGTCTTAGATGGCAAAAATAGTACAGAGTTTAACTTGGATAGTTCTGGCGATGGGGTACTTCGTGGGAATGAATCCACTGCTAGCACCATTGTTTGTTGTACTTGTAGCAGATCTTCTTCCTGCAAGACAACAAAGTGCCAATGTAGAGCGAATGGTGGTGCTTGTGGCTTGTCATGTGGTTGCATACCATCAAAGTGTTCAAACAGAGGTAGTAAAAGTGACCGGGACGCATCATTGCAACTGGATTTAACCAGGAATGTTCGAAATGCTATGGAAAACGATGAAACCGATGAGGAGAGTCGTGACCTTGTTTCTCATGGTGCAAGGTTGCTTCAGAATGCATTGGCTGAGAGACCAAGTGACGATGCTCCTCCAGCTGAAGATGGTGGCGCAAAAAGAAAGCCTCTATCAGACATCGGAAACACATTGGTGAAATCAAAGACAAACAAGCCAAACCAGAGAAAGAAATGGCGAAAATCTACCATTCAACTGATTCCAACCCCACAAGCATCTTCCCAACCAGAAAAACCCGAAGCCACCCAGAAGACTGAGAATGATTTGAATGAGATTGTCAACGTCCCATTGAAACTTCCCCGAGCTATGCGATCCGCTGCTGCGAACGGCGGGAACCTACTGAGAGAAAGAAACTCCGATCAGCTGGAAGATTCGGTCAGCGGAAACAAAGAGCATGAACTTATTGTTCCAAAAAGAGTGGATGAGAAAGAGAACTGCAACCGTTAA 4017 42.05 MENLDGKSSDSTQCVRVAVNIRPLITPELMVGCTDCITVVPGEPQVQIGSHVFTYDNVYGSAGSPSYALYDDCVAPLVDALFQGYNATVLAYGQTGSGKTYTMGTNYSGEGSNDGVIPKVMEKIFKKVETKKDSTEFLIRVSFIEIFKEEVFDLLDASTCLNTKGEGTKPFAPPRVPIQIRETVNGGITLVGVTEAEVRTTEEMTSYLSRGSLARATGSTNMNSQSRSEIQEDIDLRTFYHAIKDAIIINRSHAIFTITMEQKKKLGRGMSHDDTCDDILCAKLHLVDLAGSERAKRTGADGMRFKEGVHINKGLLALGNVISALGDEKKRREGCHVPYRDSKLTLWCPVSQSIPTWLTIGVEFTGFSWWQQQNSDDCPADSNAEETLNTLKYANRARNIQNKAVINRDPVGAQIQKMRSEIEQLQAELLFYRGDATLPYEELQILKHKISLLEASNGELLRELQERRVTCDHLSQRAIDAQVEKDKLAMIIESVRNGKSLDEIESNYDKDCELVKSYVSKIQELEGEVLRLQSFKSSKHSRYVDLVESDDDRPQSSNILFPCSNEHSLEYDPKAVDISDGMEDHEKELEHSTMQERLDRELKELDKKLEQKEAEMKRFAGTDTSVLKQHYEKKVHELEQEKRALQKEIEELRCNLSNISSTSDDGAQKLKQEYLQKLNFLETQVSELKKKQDAQAQLLRQKQKSDEAAKRLQDEIHRIKTQKVQLQHKIKQESEQFRLWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEAAQATKRLKELLESRKAARESSGLLTIGVCILSAGGGSNGPGIQALMQNIEHELEVTVRVHEVRSEYERQMEERSKMAKELAKLKEEEDLHRGAKLSDCTQTMSPGARNSRIFALENMLATSSSSLVSMASHLSEAEERERVLGGRGRWHQVRSLADAKNIMNFLMNLASSSSLWGLAYCRFSNVDRPRILFEYEFASREKDSEIRELKQKIVNLSGMLKKSEAQKAELIHQNSVLKRCSPVNSGGHNYDLRKQEHRNSVVIPADMDTSESDYADLSSDSDDINYDWERSMKRRFDRKKVSKAKGRSSMVVLDGKNSTEFNLDSSGDGVLRGNESTASTIVCCTCSRSSSCKTTKCQCRANGGACGLSCGCIPSKCSNRGSKSDRDASLQLDLTRNVRNAMENDETDEESRDLVSHGARLLQNALAERPSDDAPPAEDGGAKRKPLSDIGNTLVKSKTNKPNQRKKWRKSTIQLIPTPQASSQPEKPEATQKTENDLNEIVNVPLKLPRAMRSAAANGGNLLRERNSDQLEDSVSGNKEHELIVPKRVDEKENCNR 1338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27788210 27798022 + ClCG11G014560.1 Cla11g01423 285245

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01423 1338 MobiDBLite consensus disorder prediction 1159 1279 - -
Cla11g01423 1338 MobiDBLite consensus disorder prediction 1307 1338 - -
Cla11g01423 1338 ProSitePatterns Kinesin motor domain signature. 282 293 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cla11g01423 1338 SMART CXC_2 1120 1164 IPR033467 -
Cla11g01423 1338 Coils Coil 415 435 - -
Cla11g01423 1338 MobiDBLite consensus disorder prediction 1298 1338 - -
Cla11g01423 1338 MobiDBLite consensus disorder prediction 1180 1197 - -
Cla11g01423 1338 Coils Coil 776 803 - -
Cla11g01423 1338 Coils Coil 987 1007 - -
Cla11g01423 1338 Coils Coil 591 622 - -
Cla11g01423 1338 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 433 IPR027417 -
Cla11g01423 1338 Coils Coil 842 869 - -
Cla11g01423 1338 MobiDBLite consensus disorder prediction 1250 1279 - -
Cla11g01423 1338 ProSiteProfiles Kinesin motor domain profile. 14 400 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla11g01423 1338 SMART kinesin_4 12 408 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla11g01423 1338 Pfam Kinesin motor domain 47 228 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla11g01423 1338 Pfam Kinesin motor domain 251 345 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla11g01423 1338 PANTHER KINESIN-LIKE PROTEIN KIN-4C 8 1319 - -
Cla11g01423 1338 Coils Coil 628 662 - -
Cla11g01423 1338 PRINTS Kinesin heavy chain signature 84 105 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla11g01423 1338 PRINTS Kinesin heavy chain signature 243 260 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla11g01423 1338 PRINTS Kinesin heavy chain signature 337 358 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla11g01423 1338 PRINTS Kinesin heavy chain signature 283 301 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla11g01423 1338 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 8 1319 - -
Cla11g01423 1338 Coils Coil 671 736 - -
Cla11g01423 1338 Gene3D Kinesin motor domain 9 434 IPR036961 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01423 - - - csv:101205410 2148.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g01423 Cla-Chr11:27788210 Cla03g00174 Cla-Chr3:1918379 2.71E-52 dispersed
Cla05g02066 Cla-Chr5:32350262 Cla11g01423 Cla-Chr11:27788210 0 transposed
Cla11g01423 Cla-Chr11:27788210 Cla08g01163 Cla-Chr8:24458427 7.42E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g515 . . . . Bpe02g00139 . . . . . Cma01g01646 . . . Sed05g1562 . Cpe07g00170 Bhi04g01382 Tan02g2480 Cmetu04g1739 . Hepe10g0431 . Lcy13g1480 . . . . . . . Cone4ag1297 Cone7ag0858 . . Lsi04g02279 Csa03g04492 . . . . Bda11g00799 . . . . . . Cmo01g01696 . . . . . . . . . . . . . . Cla11g01423 Cam11g1479 Cec11g1509 Cco11g1505 Clacu11g1640 Cmu11g1458 Cre11g1876 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009556 2 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01423 Cla_Chr11 FPKM 213.604095 232.056366 9.91561 11.673065 6.83473 5.029992 7.503175 69.086403 70.247162 71.009872