Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01425 ATGGACTGCTTGACCTCCTACTCTTTACCCGCCGCATTTGCCTTCTCTAAGCCCTCCGTTTCAGCTTCTAAGCCGCCACTTCTCGCCGTCGCTCGCGGAGCCATGCCGGCGTCTGGAGTTCTCAGAGCATCTCGCACCGCCGATGCGCCGCCGTCCGTCGACGACTCTCCGGAAAACCGCACTGACAAGGAGGTTAAGCTTTGGGGCGGTCGTTTCGAGGAAAGCGTCACCGATGCAGTTGAGCGATTTACAGAATCGATCTCCTACGATAAGCAGCTTTACAAGCACGATATCAGAGGGAGTCGAGCTCATGCTACCATGCTAGCTAAACAGGGACTGATGAGTGTTGATGAAAGGGATAGTATTCTTGAGGGTTTGGATGAAATTGAGAGGCGCATTGAAAGTGGTGAGTTTGTTTGGAGAACAGATAGGGAGGATGTTCATATGAACATTGAGGCTGCCTTGATTGACATGATTGGTGAACCTGCAAAAAAACTACATACTGCTCGAAGCCGTAACGATCAAGTTCTTACTGATTTTCGATTATGGTGCCGGGATGCAATTGATACTATATTAGATGCTATCAAGTACCTGCAAGTTTCCATGGTAATTCTGGCATTGAAGAATGAGGGATTAATCGTTCCGGGCTATACACATTTACAAAGAGCGCAACCGGTTCTACTCCAGCATCTGCTCTTAGCATTTGTAGAGCAGCTTGAAAGAGATGCTGGTCGTTTGTCGGATTGCAGAGTTAGGCTAAATCTTTGCCCGCTAGGTGCATGTGCGCTGGCTGGCACAGGCCTTCCCATTGATCGTTTTATGACTGCGGAGGCTTTAGGGTTCACCGCTCCTTTGAGAAACAGCATCGATGCAGTTTCTGATCGAGATTTTGCCTTAGAATTTCTTTCTGCCAATGCAATTACCGCCATCCATCTTTCACGGCTAGGAGAAGAATGGGTGTTGTGGGCTTCTGAAGAATTCGGATTTATAACACCCAATGATTCTGTTTCAACTGGAAGTAGCATAATGCCTCAGAAGAAAAATCCAGACCCAATGGAACTTGTTCGTGGGAAGTCTGCCAGAGTCATAGGAGACTTGGTCACCACTCTCACGTTATGCAAAGGTCTTCCTCTGGCCTACAATCGTGATTTGCAGGAAGACAAGGAACCTGTATTTGACAGCGTAAAGACAATATTGGGGATGCTTGAAGTGTCAGCTGAGTTTGCTCAGAATATTTCTTTCAATCGGGAGAGAATAGAAAAGGCTTTACCTGCTGGTTATCTTGACGCCACAACACTTGCTGATTACCTCGTGAAGAAGGGAATACCTTTCAGAACAGGTCATGACATAGTTGGAAAATCTGTTGCCTTGTGTGTCACTAAGAATTGCTGCCTCCAGGACTTGAGTCTGGATGAGCTAAGAAGCATAAGTCCAGTATTTGAAGAGGATGTTTACGAGTTTCTCGGGGCCGAGAATGCGATTAATAAATTTTGTTCGTATGGTTCCACAGGAGCAGCCTGTGTCGCTACTCAAATCGAATACTGGATAAATAAACTCCAAATCAATTTGTAG 1572 46.37 MDCLTSYSLPAAFAFSKPSVSASKPPLLAVARGAMPASGVLRASRTADAPPSVDDSPENRTDKEVKLWGGRFEESVTDAVERFTESISYDKQLYKHDIRGSRAHATMLAKQGLMSVDERDSILEGLDEIERRIESGEFVWRTDREDVHMNIEAALIDMIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTILDAIKYLQVSMVILALKNEGLIVPGYTHLQRAQPVLLQHLLLAFVEQLERDAGRLSDCRVRLNLCPLGACALAGTGLPIDRFMTAEALGFTAPLRNSIDAVSDRDFALEFLSANAITAIHLSRLGEEWVLWASEEFGFITPNDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTTLTLCKGLPLAYNRDLQEDKEPVFDSVKTILGMLEVSAEFAQNISFNRERIEKALPAGYLDATTLADYLVKKGIPFRTGHDIVGKSVALCVTKNCCLQDLSLDELRSISPVFEEDVYEFLGAENAINKFCSYGSTGAACVATQIEYWINKLQINL 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27799205 27805025 - ClCG11G014580.2 Cla11g01425 285247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01425 523 Gene3D Fumarase/aspartase (Central domain) 183 512 - -
Cla11g01425 523 Gene3D - 424 496 - -
Cla11g01425 523 PRINTS Argininosuccinate lyase family signature 165 187 - -
Cla11g01425 523 PRINTS Argininosuccinate lyase family signature 206 226 - -
Cla11g01425 523 PRINTS Argininosuccinate lyase family signature 257 273 - -
Cla11g01425 523 PRINTS Argininosuccinate lyase family signature 295 319 - -
Cla11g01425 523 PRINTS Argininosuccinate lyase family signature 339 355 - -
Cla11g01425 523 PRINTS Argininosuccinate lyase family signature 374 393 - -
Cla11g01425 523 Pfam Argininosuccinate lyase C-terminal 427 494 IPR029419 -
Cla11g01425 523 PANTHER ARGININOSUCCINATE LYASE 77 522 IPR009049 GO:0004056|GO:0042450
Cla11g01425 523 PANTHER ARGININOSUCCINATE LYASE 77 522 - -
Cla11g01425 523 SUPERFAMILY L-aspartase-like 67 519 IPR008948 GO:0003824
Cla11g01425 523 Pfam Lyase 70 364 IPR022761 -
Cla11g01425 523 Hamap Argininosuccinate lyase [argH]. 66 517 IPR009049 GO:0004056|GO:0042450
Cla11g01425 523 MobiDBLite consensus disorder prediction 42 62 - -
Cla11g01425 523 CDD Argininosuccinate_lyase 86 515 IPR009049 GO:0004056|GO:0042450
Cla11g01425 523 TIGRFAM argH: argininosuccinate lyase 67 515 IPR009049 GO:0004056|GO:0042450
Cla11g01425 523 Gene3D - 86 293 IPR024083 -
Cla11g01425 523 PRINTS Fumarate lyase superfamily signature 166 184 IPR000362 -
Cla11g01425 523 PRINTS Fumarate lyase superfamily signature 211 229 IPR000362 -
Cla11g01425 523 PRINTS Fumarate lyase superfamily signature 295 322 IPR000362 -
Cla11g01425 523 PRINTS Fumarate lyase superfamily signature 339 355 IPR000362 -
Cla11g01425 523 ProSitePatterns Fumarate lyases signature. 339 348 IPR020557 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01425 K01755 argH, ASL; argininosuccinate lyase [EC:4.3.2.1] - csv:101205167 989.949
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g01425 Cla-Chr11:27799205 Cla08g01162 Cla-Chr8:24452092 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g518 . Blo12g00732 . Bda03g00456 . . Bma04g00431 Bma01g02585 . Cmo12g00155 . . . Car12g00183 Sed01g4279 . Cpe07g00171 Bhi04g01383 Tan02g2479 Cmetu03g0752 . Hepe10g0432 . Lcy13g1481 . . . . . . . . . . . Lsi04g02280 Csa03g04493 Chy04g00207 . . . Bda11g00800 . . . . . Sed05g1560 . . Cma12g00201 . . . . . Bhi09g02498 Tan01g3852 Cmetu04g3041 . Hepe01g2170 Mch11g0709 . Cla11g01425 Cam11g1480 Cec11g1510 Cco11g1506 Clacu11g1641 Cmu11g1459 Cre11g1877 . . . Cme04g00237
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002720 2 2 1 3 1 1 2 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 1 2 2 2 2 1 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01425 Cla_Chr11 FPKM 1.737937 1.649927 6.291892 8.007768 56.726501 50.071644 62.609661 5.908317 5.598705 6.024201