Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01427 ATGGACGGCGGTAAAAACAGTCTAATTTCCGAGTTAAAATTTTCGTCGGTGGTTCCGGCAAAGGCGACCGGCGACGACAAGGTCCGGGAATTAACGGCGATCGATCTGGCGATGAAGCTTCATTATATTAGAGGCGTTTATTTGTTCAGAGGGAGCGAAGAAGTGAGAAATTTGACGATTTATGACCTGAAAAAACCTTTGTTTCCGTTGTTGGAGCAATACTACGTCGTTTCGGGGAGGATTCGAAGGAGAATCGAAGATGGAGATCGGCCGTTCATTAAGTGTAATGATAGTGGAGTGAGAATTGTGGAAGCAAATTGTGAGAAAAGTATTGATGAATGGCTTTCGATTATTGAGGGAGACGATAAATTTCTGCATCGCGATGGCTGTTTGGTTCATACTCAAGCCATTGGTCCCGATCTTGGATTTTCCCCTCTTGCTTTCATCCAGCTGACTCGGTTCAAGTGTGGCGGTCTCTCCGTGGGCCTCAGTTGGACTCACATTCTCGGCGATATCTTCTCCGCCTCCACCTTCATCAACGCATGGGGTTCCATCATGAACAACCGCCCGGCCCACCAACTCCGTCCGGCGCCGGCTGGTCTTATCTGGCCGTTCAGATCAACCAGACTGTCCACACCGCCGGTCAAGAGGCTCGACCCGACCGGAGACCTTTGGATCGGGTCAAGCGACTGCAAAATGGCGACGCTGTCATTTCGAATCACGGGGGAGCAATTGGATCGAATATTGAGCGTCGTCGGCCGGAATCGAGCGGTGAACTTCTCAACTTTCGAAGCTATTGCTGCGATTTTCTGGAAATCTTTGTCGAAAATACGGCTTGAGGACTCGGATTCGAGGACGATCTCGATCTATTCGACGAAATGCCCTAACAGAGAGGGTGAAATTCCGAGGAACGGAATGGAGATGAGCGGCGTCGAGGCCGATTTTCCAGTCGCAGGAGCGGCGGAAGGCGAATTGGCGGAGCTGATTGTGAAGAAGAAAATTGATGAGGGCGGAGAAATCGAAGAAGTGGTGGAGAAAGGAAAGGAGGAATCGGATTTCATAGCGTACGGAGCGAGATTGACGTTCGTTGATTTGGAAGAAGCGAATATTTACGGCTTCGAATTGGAAGGGCAGAAGCCAGTTCATGTGAATTATGAAATTGGGGGAGTTGGTGAAAACGGCGTCGTTTTGGTACTTCCAGGACCACCGCGTGACGACGGAAGAGACGGTGGCCGAACGGTGACGGTTATCTTGCCGGAGAAACAGCTGCCGGACCTTATCGATGAACTGCAGAAGCAGTGGGAGATCCACTTCTGTGCTTGCGTGTCTATCATTGAGCACTGCACCCTCACCACCGTCGCCGATAAGTCCGAATTTCTTTTGCAACCGCAACGCTTAACATTCGTTTTCCGGTTTCGTCTTCAAACAATTTCCGATAAGCGATTTCAGCCTCATCGGCGACAGTCACCGGCGCTGCACCTCTTCTTATGCGATTTCATTACGAGCTCTACAATGATTGAGAGGAAAGAGAAGCAAAGGACAGGGACAATTAGTATGGAAGATTGTTCCACTCTATTGGAAAGATATTCAGTAAGGACGATATTTACTTTGCTTCGGGAGGTGGCCCAGGTTTCGGGAGTGAGAATTGATTGGGACAAATTGGTGAAGAACACGTCCACTGGGATTTCTAATGTTCGGGAGTATCAGTTGTTATGGCGGCATTTGGCTTATCGTCACACATTACTGGAGAACATGGATTCTGTTACTGATCCTCTGGATTATGATAGTGACTTAGATTTTGAAATAGAACCTTTTCCATCTGTTAGCAGTGAGTCCTCGTATGAAGCTGCAGCATGTGTAAAGGTACTGATTGCTAATGGTATACCAAGTGAGTCAGATGTTCCAACTAGTTCTGCAGTTGAGGCCCCATTGACTATAGGTATATCCAATAGTCAAGCATCTACAGACAATCTTAAAAATCCTCAATATGCTTGTTTGATGCAAGGGATGTCTGTTACAATTCCACTTTCCATTCAGAGGCAGCCGATTCCAATGGCAGCAGCAACTGAAGTATTTGATGTGAATGGAGCAGCTGGTGCTAATGCAGCTTCTCAGAAAAGAAGGAAGCCTTGGTCGAAGGCAGAGGATTTGGAATTGATGGCTGCTGTGGAGAAGTGTGGTGAAGGAAACTGGGCGAATATCTTGAAAGGAGACTTCAAAGGGGATAGAACTGCTTCACAGCTATCTCAGATTCTTGGAGTATTCTCTCCTTTGTCCCTTTGGCCACACCAATTTGGTATGAAGTGTTTGCCTAGGCCGAGGTTGGTTGCCGTGGAAAAGCCAAAAATTCTTGATGATGTCGATCGCAAGAGGGAGCTTTGGGGGTTGAAGCGACATGGTAATTTGAATGTGGGAGCTAGCACCACAAGTACTACCCAGAAAGCTCAGATTGATGCTGCACACCGTGCATTGTCCTTTGCCCTTGATTTGCCTGTGAATAACTCAAAAACAGCAAATTCAAATATAAACAGTAGCATTGTTTCTCCTGCAAGTGGTGCCGAAGCTTTGGTTCAAATGCAGAACCAGTCTCCACAGATTTCCATGCCTTCAAGGCCGCTGCTGGTAGAGCCTTTGCCTTCAGCAGTGAAATCTGGAATCAACACTTCCAAGAATTCATTGATTATGAAGTCTACTCACAATTCTGATTCTATAGTTAGAGCAACTGCAGTAGCTGCAGGGGCCCGAATTGTTTCTCTGTCCGATGCTGCATCTTTACTGAAAGTTGCACAAACAAAAAAGGCCATCCACATAAAGTCCAAATGTGTTTCATCAACCCAATCACCTGTGGCTGGAAATGCACCAATCCACTTGGATGGACGCCCCAGTGTACATTATATTTCCCCAGGAAAAACACCGACTCCAGGGTCAAGCCATGTCGGCGGTAAATCTACTATGGGGTGCAATAACTCAGTGAAGGCTGTCTCACCAAAAGTTCTGCATAATCGTTCTACTGCTATTTTGACAAACCCGCCATCAGACCAAGTAAGCCCAACAACTGAGTCTCCACTGAAGCAAGAGGTTAACAGTTCAGAAGAACGGAAAATTCCCAAGCCAATCATTACTGCAAAAGAGGAGTTCCGAGAAAACAGCTTGGCAAATGATGTCAAGATTAGGGGCTGA 3180 47.08 MDGGKNSLISELKFSSVVPAKATGDDKVRELTAIDLAMKLHYIRGVYLFRGSEEVRNLTIYDLKKPLFPLLEQYYVVSGRIRRRIEDGDRPFIKCNDSGVRIVEANCEKSIDEWLSIIEGDDKFLHRDGCLVHTQAIGPDLGFSPLAFIQLTRFKCGGLSVGLSWTHILGDIFSASTFINAWGSIMNNRPAHQLRPAPAGLIWPFRSTRLSTPPVKRLDPTGDLWIGSSDCKMATLSFRITGEQLDRILSVVGRNRAVNFSTFEAIAAIFWKSLSKIRLEDSDSRTISIYSTKCPNREGEIPRNGMEMSGVEADFPVAGAAEGELAELIVKKKIDEGGEIEEVVEKGKEESDFIAYGARLTFVDLEEANIYGFELEGQKPVHVNYEIGGVGENGVVLVLPGPPRDDGRDGGRTVTVILPEKQLPDLIDELQKQWEIHFCACVSIIEHCTLTTVADKSEFLLQPQRLTFVFRFRLQTISDKRFQPHRRQSPALHLFLCDFITSSTMIERKEKQRTGTISMEDCSTLLERYSVRTIFTLLREVAQVSGVRIDWDKLVKNTSTGISNVREYQLLWRHLAYRHTLLENMDSVTDPLDYDSDLDFEIEPFPSVSSESSYEAAACVKVLIANGIPSESDVPTSSAVEAPLTIGISNSQASTDNLKNPQYACLMQGMSVTIPLSIQRQPIPMAAATEVFDVNGAAGANAASQKRRKPWSKAEDLELMAAVEKCGEGNWANILKGDFKGDRTASQLSQILGVFSPLSLWPHQFGMKCLPRPRLVAVEKPKILDDVDRKRELWGLKRHGNLNVGASTTSTTQKAQIDAAHRALSFALDLPVNNSKTANSNINSSIVSPASGAEALVQMQNQSPQISMPSRPLLVEPLPSAVKSGINTSKNSLIMKSTHNSDSIVRATAVAAGARIVSLSDAASLLKVAQTKKAIHIKSKCVSSTQSPVAGNAPIHLDGRPSVHYISPGKTPTPGSSHVGGKSTMGCNNSVKAVSPKVLHNRSTAILTNPPSDQVSPTTESPLKQEVNSSEERKIPKPIITAKEEFRENSLANDVKIRG 1059
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27814511 27836663 - ClCG11G014590.2 Cla11g01427 285249

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01427 1059 Gene3D - 8 214 IPR023213 -
Cla11g01427 1059 MobiDBLite consensus disorder prediction 1006 1025 - -
Cla11g01427 1059 CDD SANT_TRF 709 750 - -
Cla11g01427 1059 SUPERFAMILY Homeodomain-like 706 749 IPR009057 -
Cla11g01427 1059 MobiDBLite consensus disorder prediction 969 989 - -
Cla11g01427 1059 Gene3D - 700 750 - -
Cla11g01427 1059 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 505 1052 - -
Cla11g01427 1059 MobiDBLite consensus disorder prediction 1006 1036 - -
Cla11g01427 1059 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 505 1052 - -
Cla11g01427 1059 Pfam Transferase family 16 286 - -
Cla11g01427 1059 ProSiteProfiles Myb-like domain profile. 703 747 IPR001005 -
Cla11g01427 1059 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 703 736 IPR017930 -
Cla11g01427 1059 Gene3D - 229 428 IPR023213 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01427 - - - cmo:103503656 753.821
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g01427 Cla-Chr11:27814511 Cla09g00304 Cla-Chr9:2934078 6.92E-15 dispersed
Cla02g01628 Cla-Chr2:31036756 Cla11g01427 Cla-Chr11:27814511 4.61E-21 transposed
Cla06g00775 Cla-Chr6:10480312 Cla11g01427 Cla-Chr11:27814511 2.04E-87 transposed
Cla11g01427 Cla-Chr11:27814511 Cla08g01160 Cla-Chr8:24429708 2.58E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g521 . . Bda01g00909 . . . . . . Cmo12g00157 . Cma09g00595 . Car12g00185 Sed04g0197 Cpe06g00456 Cpe07g00173 Bhi04g01388 Tan02g2476 Cmetu03g1900 . Hepe10g0434 . Lcy13g1484 . . . . . . . Cone4ag1295 Cone7ag0860 . . . . Chy04g00204 . . . . . Bpe02g01148 Bpe14g00483 . . Sed13g1535 . Cmo09g00581 Cma12g00203 . . Car09g00526 . . Bhi09g02501 Tan01g3854 . . . Mch11g0711 . Cla11g01427 Cam11g1483 Cec11g1513 Cco11g1509 Clacu11g1644 Cmu11g1462 Cre11g1880 . . . Cme04g00235
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010250 2 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01427 Cla_Chr11 FPKM 7.983092 11.367908 11.865177 15.559361 12.796363 8.972875 8.337577 8.188961 8.063424 9.680961