Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01437 ATGACTCATGGCTTTGGCATTCCAAACGCCATGATCCTTGTAAACACATATCACCGCGCCAAGCTGCAACTACGCGCGCCGGTTCTGTGCAGCATTAAATTCCAACCTTCGCCGTCGAGCAAAGTATTTCGCGAATCTGAATCAAATTTCGGAAGTGAAGGTTTTACAATGTCATCCAGATCAGGCGTCCGATTGCAGATACGAGATCATCATGTGGTAGTGGATAATGGAATACTGCAACTAACCTTATCAAAACCTGGTGGAATTATCACTGGCATACGATATAATGGTGTTGACAATCTGCTTGAATTATGTTTTCATGTAATTTTGAATCGATTACCATACAGGATTAAAGGGTCAAATTTTAGGGTTGTAGTGGAAAATGAGGAACAGGTCGAACTGTCTTTTACGAGGATGTGGGATCCCTCCCTCGAGGGCAAGTTCGTTCCTTTAAATATTGACAAAAGGTTCATAGTACTACCCGGTTCCTCTGGATTCTACTCTTATGCTATTTATGAACACTTGAAGGATTGGCCTGATTTTGATATTGGCGAAACCAGGATCACTTTTAAACTTAGAAAAGACAAGTTTCAGTACATGGCTGTAGCTGACAATAGGCAGAGAGTCATGCCCCTGCCCGATGACCGGTTACCTGGAAGATGCCAAACTTTGGCCTACCCTGAAGCTGTCTTGCTGACTAATCCCAAGAACCCTGAACTCAAGGGTGAGGTGGATGACAAATACCAATACTCGTGTGAAAACATAGACTTAAAGGTTCATGGATGGATATGCACCAATCCACCCACCGGGTTTTGGCAGATTACTCCCAGTGATGAATTCCGGTCAGGGGGGCCTCTTAAGCAAAGTCTAACATCACACGTGGGACCTACAACCCTTGCTATATTTCTCAGTACTCATTATGCGGGACAAGATTTAGTGCCAAAATTTAGAGCTGGTGAGCCATGGAAGAAAGTTTTTGGCCCTGTTTTTCTCTATCTCAATTCCACCTCAGTTGGAGATGATCCGTTTTGGTTATGGGAGGATGCTAAAATTCAGATGATGGCGGAAGTCGAAAGTTGGCCTTATAGTTTCCCTGCATCTGAGGATTTCCCGAAAGTAGATCAACGGGGTATTGTTAGTGGTCGGCTACTGGTTTTTGACAGGTATGTGAGTCAAGACTATCTTCCGGCCAGTGGAGCCTTCGTCGGATTGTCTGCACCAGGAGAAGTGGGGTCATGGCAGAGAGAATGCAAGGGATATCAATTCTGGACTAGAGCAGATGATGGTGGTTATTTTACCATCAACCACATACACACTGGCTACTACAATTTATATGCATGGGTCCCTGGCTTCGTTGGAGATTACCGTTGTGACGCCCTCATCAACGTAAACCAAGGATCTTGTATTGAAATGGGCGATCTTGTATATGAACCTCCAAGAGATGGGCCCACACTATGGGAAATAGGCATTCCCGATCGATCTGCGTCTGAGTTCTATGTTCCTGATCCTAATCCAATTCATATTAATAAGCTCTTTGTCAACCATCCTGACAGGTTCCGGCACTACGGGTTGTGGGACAGATATGCTGAATTATACCCGGACGAGGATTTAGTATACACTGTTGGTACAAGTGACTATACCAAAGATTGGTTCTTTGCTCAGGTTCCTAGGAAGAAAAACAGTAATTCACATGAAGGAAGTACTTGGCAAATCAAATTCAAACTTGATAGAGTGGATCACAAGAATATCGTGGGCATAGCAGGCTGTCATCTTGTTGAAGGAGATAACATAATCTTCTTGACTCAGCCACGCTGCACCAGCCCTTTCCAGGGTATCATGTCCTCCAACAAAGTTGTGATGGACAATGGCATAATCGGAGTCAACTTGTCGAACCCAATGGGCATGGTCATTGGAATACAGTACAAAGGGATTGAAAACTTGCTCGAAGTTGACAATTCTGAAGATGATAGAGGATATTGGGACATCGTTTGGAATGTGGCAGGAAGTTCAGGAACCAAGGGCATTTTTGATCGAATTGAAGCAACAGATTTCAAGGTAATTGTAGAAAATGATGAACAAATTGAACTCTCATTCAGCAGAACTTACAATTCATCCATCGGACGCGACCTCATTCCCTTGAACATCGACAAAAGGTTCGTGATGCTTCGTAATTCATCAGGATTCTATTCGTACGCCATTTACGAACACTTGAAAGAATGGCCAGCGTTTATCATCGACAACACCAGAATCGTATTCAAGCTCCGAAAAGACAAGTTTCGTTACATGGCTGTAGCAGATAAGAGACAGAGATTCATGCCTTTACCCGGCGATCGGAAGCCACCGCGAGGGGAAGCCCTGGCTTATCCGGAGGCCGTCCTTCTTCTCGATCCTATCGAACCAGAGCTCAAGGGAGAGGTGGATGACAAGTACCAATACGGCTGCGAAAGCAAAGACGCTCGAGTTCACGGGTGGATATCCACCGACCCGCCCATTGGCCTTTGGCAAATCTCACCGACCGAGGAGTTTCGCTCCGGTGGGCCCCTGAAACAGTTTCTCACTTCCCATGTCGGTCCCACAACCCTTACTGTTTTTCATAGCGCTCATTACGCAGGAGAGGATATGGTTGTAAAGTTCGGTGGTAATGAGCCATGGAAGAAGGTTTTCGGTCCTATCTTTATCCATCTTAATTCCTTGCCTGAAGGAGAGGATCCCCTTAGACTCTGGCAAAATGCTAAAGAACAGATGATGACTGAAGTTCAAAGCTGGCCTTACGGTTTCCTTGCTTCTGAGGATTTTCTCAAATCCGATCAACGAGGCACCGTCAGCGGCAGATTGATAATCCGGGAGAGATTTGTGAGTGATGAATCTGTGCCTGCAAGTGGTGCATATGTGGGGTTGGCACTTCCTGGAGAACTTGGCTCTTGGCAAACCGAAAGCAAGGGCTACCAATTCTGGACTAGGGCAGATCAGAATGGTTCTTTCTCTTTGAATAATGTTCGCAGTGGAAATTATAGTCTTTATGGATGGGTCCTCAATTTTATCGGCAATTACCAATACAATCATTTCATCACTGTAACCCCAGGCAGTGATATCAATGTGGGTGAACTTGTTTTTGAGCCCCCAAGAGATGGTCCTACATTGTGGGAAATAGGCATTCCTGACCGTACTGCTGCAGAATTCTATGTACCGGATCCTAATCCAAAGTATATTAATAAACTTTATGTCAATCATTCAGATAGGTTTAGGCAGTATGGATTATGGGAAAGATACGCAGAGTTATATCCTGATAAGGATCTAGTTTATACAGTCGGGCTTAGTGACTACAGAAAAGATTGGTTCTTTGCACAAGTTACCAGGAAGATAGGGGACAACAAATATGCTGGAACAACCTGGAAAATTAAGTTCCAACTTGACAGTCCAGATACACATGGAACATATAGGCTGCGTCTTGCATTGGCTACTGCACATGCTGCAGAATTACAAGTTCGACTGAATGATGCACAAGCACTTTCTCCATTATTCACAACTGGATTGATTGGAAGGGACAATACTATAGCTAGACATGGAATCCATGGTCTCTATCGGCTGTACACGGTTGACATTCCAGGCAGTGAGCTTGTGGTGGGAAACAATACAATTCTTCTTACGCAAGCAAGTAGCAACAGTCCTTTTGTAGGGATCATGACCCTTAACATCCAAAATGTAGTTATGGACAATGGTATATTGCAAGTGACACTGTCCAAGCCAGATGGAAACGTTACTGGGATAAAATACAACAGCATTGACAATGTTTTAGAAGTTGATGATAAGGAAGCTCATAGAGGGTACTGGGACCTCGTGTGGAACTCTGGGACTCTGGGAACGACGGGAACATTCGATGAGATGAGAGGAAAAGAATTTGAAGTGATGGTGCAAAATGAGGAACAAATAGAGCTCTCATTTAAAAGGAATTATTCATTCAAGGACAAGTCTGTTCCCTTAAACATAGACAAAAGGTTCATAATGCTTCGCAACTCCTCTGGGTTCTACTCCTATGCCATCTATGAGCACATGAAGGAATGGCCACCATTCAACCTTCCTCAAACAAGGATTAGATTCATGCCACTTCCCGAGGATAGACTACGTCACAGAGGAAAACCTTTGGATTTTCCAGAGGCTGTATTGCTAGTCAATCCTAAAGAACCTGAGTTCAAGGGAGAGGTGGATGATAAGTACCAATATTCTTGTGAAAATAAAGATCTTAAAGTGCATGGATGGATATCCATGGATCCTCCGGTGGGTTTCTGGCAAATCACTCCAAGCAGTGAGTTCAGATCAGGCGGACCCCTCAAACAGAACCTTACCTCTCATGTGGGCCCATATACTCTTGCTATGTTTCTTAGCGCTCACTATTCAGGAGAGGACTTGGTGCTGAAGCTCAGTCCTGATGAGCCGTGGAAGAAAGTTTTTGGCCCTGTCTTTTTCTATCTAAATTCTGTTTCTGATGGAGGCGATCCACTTTCTTTGTGGGAAGATGCTAAAACTCAGATGACGAAGGAAGTTCAAAGCTGGCCCTATTCTTTCCCGGCTTCTGAGGATTTCCCCCCACCAAACCAACGTGCACCAGGAGATGTTGGATCATGGCAGACCGAAAACAAGGGTTACCAGTTTTGGACGAAAACAGATGCAGATGGCTCATTTAGCATTGAACACGTACGCATCGGCGACTACAATCTTTATGCTTGGGTTCCTGGCTTCATTGGTGACTACCGTTATGATGCTATCATTAGTGTATCTGCAGGTAGTGATATGGACATAGGTAATCTTGTTTATGAGCCACCTAGGAATGGGCCCACATTGTGGGAAATAGGCATTCCCGATCGCTCTGCTGCTGAATTCTATGTTCCTGATCCTGATCCAAAGTACATAAACAAATTGTATGTCAATCATCCGGATAGATTTAGGCAATATGGACTGTGGGAAAAATATGCAGAGTTATATCCTGATTCAGACTTAGTATATACAGTTGGTGTTAGTGATTACACAAAAGATTGGTTCTTTGCTCATGTTAATCGAACGAGAAATGATGGATCCCATTTAGCAACCACTTGGGAAATCAAGTTTACACTTGATAATGTCATAGATAAGAGCGGCACCTATACATTACGAGTGGCTTTGGCCACTGCCAATGTTGCCGAATTGCAGGTAAATAATCCAGAAGCCAAGCCTAGTTTATTTACAACAGGAGTGATTGGGCATGATAATGCAATCGCTAGGCATGGAATTCATGGACTCTATCGACTTTATAGTGTGGACATATTGGGATCTCTCCTGGTGGAAGGGGAGAACACAATCTTCCTTTCACAAATTATAAGCAGTTCATCTTTCAACGGCCTCATGTATGATTATATCCGCCTCGAAGGCCCCCCATCCCACACTTCTACAAATTCATAA 5433 44.01 MTHGFGIPNAMILVNTYHRAKLQLRAPVLCSIKFQPSPSSKVFRESESNFGSEGFTMSSRSGVRLQIRDHHVVVDNGILQLTLSKPGGIITGIRYNGVDNLLELCFHVILNRLPYRIKGSNFRVVVENEEQVELSFTRMWDPSLEGKFVPLNIDKRFIVLPGSSGFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRVMPLPDDRLPGRCQTLAYPEAVLLTNPKNPELKGEVDDKYQYSCENIDLKVHGWICTNPPTGFWQITPSDEFRSGGPLKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSVGDDPFWLWEDAKIQMMAEVESWPYSFPASEDFPKVDQRGIVSGRLLVFDRYVSQDYLPASGAFVGLSAPGEVGSWQRECKGYQFWTRADDGGYFTINHIHTGYYNLYAWVPGFVGDYRCDALINVNQGSCIEMGDLVYEPPRDGPTLWEIGIPDRSASEFYVPDPNPIHINKLFVNHPDRFRHYGLWDRYAELYPDEDLVYTVGTSDYTKDWFFAQVPRKKNSNSHEGSTWQIKFKLDRVDHKNIVGIAGCHLVEGDNIIFLTQPRCTSPFQGIMSSNKVVMDNGIIGVNLSNPMGMVIGIQYKGIENLLEVDNSEDDRGYWDIVWNVAGSSGTKGIFDRIEATDFKVIVENDEQIELSFSRTYNSSIGRDLIPLNIDKRFVMLRNSSGFYSYAIYEHLKEWPAFIIDNTRIVFKLRKDKFRYMAVADKRQRFMPLPGDRKPPRGEALAYPEAVLLLDPIEPELKGEVDDKYQYGCESKDARVHGWISTDPPIGLWQISPTEEFRSGGPLKQFLTSHVGPTTLTVFHSAHYAGEDMVVKFGGNEPWKKVFGPIFIHLNSLPEGEDPLRLWQNAKEQMMTEVQSWPYGFLASEDFLKSDQRGTVSGRLIIRERFVSDESVPASGAYVGLALPGELGSWQTESKGYQFWTRADQNGSFSLNNVRSGNYSLYGWVLNFIGNYQYNHFITVTPGSDINVGELVFEPPRDGPTLWEIGIPDRTAAEFYVPDPNPKYINKLYVNHSDRFRQYGLWERYAELYPDKDLVYTVGLSDYRKDWFFAQVTRKIGDNKYAGTTWKIKFQLDSPDTHGTYRLRLALATAHAAELQVRLNDAQALSPLFTTGLIGRDNTIARHGIHGLYRLYTVDIPGSELVVGNNTILLTQASSNSPFVGIMTLNIQNVVMDNGILQVTLSKPDGNVTGIKYNSIDNVLEVDDKEAHRGYWDLVWNSGTLGTTGTFDEMRGKEFEVMVQNEEQIELSFKRNYSFKDKSVPLNIDKRFIMLRNSSGFYSYAIYEHMKEWPPFNLPQTRIRFMPLPEDRLRHRGKPLDFPEAVLLVNPKEPEFKGEVDDKYQYSCENKDLKVHGWISMDPPVGFWQITPSSEFRSGGPLKQNLTSHVGPYTLAMFLSAHYSGEDLVLKLSPDEPWKKVFGPVFFYLNSVSDGGDPLSLWEDAKTQMTKEVQSWPYSFPASEDFPPPNQRAPGDVGSWQTENKGYQFWTKTDADGSFSIEHVRIGDYNLYAWVPGFIGDYRYDAIISVSAGSDMDIGNLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPDPKYINKLYVNHPDRFRQYGLWEKYAELYPDSDLVYTVGVSDYTKDWFFAHVNRTRNDGSHLATTWEIKFTLDNVIDKSGTYTLRVALATANVAELQVNNPEAKPSLFTTGVIGHDNAIARHGIHGLYRLYSVDILGSLLVEGENTIFLSQIISSSSFNGLMYDYIRLEGPPSHTSTNS 1810
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27980311 28011104 - ClCG11G014710.1 Cla11g01437 285259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01437 1810 SUPERFAMILY Galactose-binding domain-like 481 613 IPR008979 -
Cla11g01437 1810 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1233 1534 - -
Cla11g01437 1810 SUPERFAMILY Galactose-binding domain-like 1043 1228 IPR008979 -
Cla11g01437 1810 Pfam Polysaccharide lyase family 4, domain III 484 580 IPR029411 -
Cla11g01437 1810 Pfam Polysaccharide lyase family 4, domain III 1046 1228 IPR029411 -
Cla11g01437 1810 Pfam Polysaccharide lyase family 4, domain III 1612 1799 IPR029411 -
Cla11g01437 1810 SUPERFAMILY Starch-binding domain-like 1542 1598 IPR013784 GO:0030246
Cla11g01437 1810 Pfam Rhamnogalacturonate lyase family 66 244 IPR010325 -
Cla11g01437 1810 Pfam Rhamnogalacturonate lyase family 614 806 IPR010325 -
Cla11g01437 1810 Pfam Rhamnogalacturonate lyase family 1224 1401 IPR010325 -
Cla11g01437 1810 CDD RGL4_N 1228 1502 - -
Cla11g01437 1810 Gene3D - 934 1034 - -
Cla11g01437 1810 Gene3D - 1529 1599 - -
Cla11g01437 1810 Gene3D - 1386 1472 IPR014718 GO:0030246
Cla11g01437 1810 Gene3D - 609 889 IPR014718 GO:0030246
Cla11g01437 1810 Gene3D - 64 349 IPR014718 GO:0030246
Cla11g01437 1810 SUPERFAMILY Starch-binding domain-like 934 1034 IPR013784 GO:0030246
Cla11g01437 1810 CDD RGL4_C 1614 1800 - -
Cla11g01437 1810 CDD RGL4_N 71 337 - -
Cla11g01437 1810 Pfam Polysaccharide lyase family 4, domain II 960 1032 IPR029413 -
Cla11g01437 1810 Pfam Polysaccharide lyase family 4, domain II 398 469 IPR029413 -
Cla11g01437 1810 Pfam Polysaccharide lyase family 4, domain II 1536 1597 IPR029413 -
Cla11g01437 1810 CDD RGL4_C 1048 1228 - -
Cla11g01437 1810 CDD RGL4_M 375 474 IPR029413 -
Cla11g01437 1810 SUPERFAMILY Galactose mutarotase-like 69 340 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cla11g01437 1810 CDD RGL4_N 614 897 - -
Cla11g01437 1810 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 60 581 - -
Cla11g01437 1810 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1534 1808 - -
Cla11g01437 1810 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 616 1229 - -
Cla11g01437 1810 CDD RGL4_M 937 1036 IPR029413 -
Cla11g01437 1810 PANTHER RHAMNOGALACTURONATE LYASE B-RELATED 60 581 - -
Cla11g01437 1810 PANTHER RHAMNOGALACTURONATE LYASE B-RELATED 1534 1808 - -
Cla11g01437 1810 SUPERFAMILY Galactose-binding domain-like 1609 1800 IPR008979 -
Cla11g01437 1810 SUPERFAMILY Starch-binding domain-like 376 467 IPR013784 GO:0030246
Cla11g01437 1810 CDD RGL4_M 1535 1602 IPR029413 -
Cla11g01437 1810 PANTHER RHAMNOGALACTURONATE LYASE B-RELATED 1233 1534 - -
Cla11g01437 1810 PANTHER RHAMNOGALACTURONATE LYASE B-RELATED 616 1229 - -
Cla11g01437 1810 Gene3D - 1044 1233 - -
Cla11g01437 1810 Gene3D - 1610 1800 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00791 Cla-Chr10:16105616 Cla11g01437 Cla-Chr11:27980311 0 dispersed
Cla01g01783 Cla-Chr1:32779400 Cla11g01437 Cla-Chr11:27980311 0 wgd
Cla11g01437 Cla-Chr11:27980311 Cla08g01151 Cla-Chr8:24302411 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01437 K18195 - csv:101203789 1146.34