Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01450 ATGGAGTTGAATGAAAACTATTTGTTAGAGGAAGTTTTAGGTGTGAGAAGAGAAATGAATTGGGAATTAGCAATGTCTATGGAAATGAATGAGTTAATTTGTAGTGCAAATGGGTGGAATTTCGATTGCTCTGATTCTTCAGCAATGGATCAGCACAATCTTAATTATCTTCTCGGTGGGCAAGGTCAGTACTGTTTGCCTACGGCGGCGGGGAGTACCGGCGATTCAATGTTGGAGACTCCGCCGAGTAGTTTTGAGGTTTATAATGGGGAATATCCGATTACGAGTATGGAAGAGGAGGAACTTGGAATTTTGGAGGATGAGATTCATAATCTTGAAGTTCAGGCTAATTATTGTAAAGTTGAGGCTAATGTTGAATCTCCTATCCCCATTTTCAACACGGGTGGCACGTGCGACGATTTTCCCAAACAAAAAATCGTCAATTACTCGTGTACTAAGAAGCTTCAGGGGCAGCCGTCCAAGAATCTCATGGCTGAGAGACGGCGGAGGAAGCGTCTCAACGATCGCCTCTCTATGCTCAGATCCATTGTCCCCAAAATCAGCAAGATGGATAGAACCGCGATTCTGGCAGATGCAATTGAGTACGTGAAGGAACTGATGGAGAAAATTAAGAAGTTGGAAAGGGAAATTGAGGTGAATAATAATAATAATCCGAATAAGTTGGGGATTATGAGAGATGTGAAACCAAATAATGAATATTTGGTGAGAAATTCACCCAAGTTTAATGTGGAAAGAAGAGGAGATGACACAAGGATTGAGATTTGTTGTGCAGCAAAGCCAGGGTTATTATTGTCAACAGTGCACACTCTTGAAACATTGGGGCTTGATATTCAGCAGTGTGTTATTAGCTGTTTCAATGACTTTGCAATTCAAGCTTCTTGTTCTGAGGGAAGCGAGCAGAGAACAATAGTGAGCACTGAAGAAGTAAAGCAAGCATTATTTGAAAATGCTGGCTATGGAGGAAAATGCTTGTAG 996 41.37 MELNENYLLEEVLGVRREMNWELAMSMEMNELICSANGWNFDCSDSSAMDQHNLNYLLGGQGQYCLPTAAGSTGDSMLETPPSSFEVYNGEYPITSMEEEELGILEDEIHNLEVQANYCKVEANVESPIPIFNTGGTCDDFPKQKIVNYSCTKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYVKELMEKIKKLEREIEVNNNNNPNKLGIMRDVKPNNEYLVRNSPKFNVERRGDDTRIEICCAAKPGLLLSTVHTLETLGLDIQQCVISCFNDFAIQASCSEGSEQRTIVSTEEVKQALFENAGYGGKCL 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28134276 28137195 + ClCG11G014830.1 Cla11g01450 285272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01450 331 SMART finulus 163 212 IPR011598 GO:0046983
Cla11g01450 331 Coils Coil 95 115 - -
Cla11g01450 331 CDD ACT_UUR-ACR-like 257 320 - -
Cla11g01450 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 206 IPR011598 GO:0046983
Cla11g01450 331 PANTHER - 77 331 - -
Cla11g01450 331 Gene3D - 152 224 IPR036638 GO:0046983
Cla11g01450 331 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 77 331 - -
Cla11g01450 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 222 IPR036638 GO:0046983
Cla11g01450 331 Coils Coil 196 223 - -
Cla11g01450 331 Pfam Helix-loop-helix DNA-binding domain 163 206 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla08g01184 Cla11g01450 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g01450 Cla-Chr11:28134276 Cla02g00417 Cla-Chr2:4095436 2.61E-19 dispersed
Cla01g01776 Cla-Chr1:32712626 Cla11g01450 Cla-Chr11:28134276 8.53E-79 wgd
Cla11g01450 Cla-Chr11:28134276 Cla08g01184 Cla-Chr8:24732139 5.59E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62062 PF00010 HLH 5.70E-10 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01450 - - csv:101222621 399.823