Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01454 ATGTCTTGTGGGATGTGGGCGTCGATTGATTGTTCTGATTCCCAGATGGACCTTACGCATATGGCCGTCGTCTCATCTGCTCGCTTAAATTCTCTCACAACCACACCGCTCCGGCTGTTTCTCCCGTCAGTTTCCTGTTCTTTCCCTTCCCGGAATAAAATTCCCTGCTCCTTTCAAAGCCTAACACCTCCCCAGTTCACCCCCATCGCCATTTTTGTTTCACAACTAGTTTTCCCTTCTAGGTCTACTATGGCAGGAGTTCTCAGAGAAAGAGCACTATCTCTCCTAGCCGCCGCTAACAACCACGGCGATTTAACGGTGAAGATTTCATCTTTAAAGCAGGTTAAGGATATCATACTGGCCATCGAGCCATCATTCGCAGCAGAGCTCTACTCCTACTTGGTCGAGCTTCAGTCCTCCCCCGAGAGCTTACTACGTAAATTGTTAATTGAGGTGATTGAAGACATTGGATTAAGAGCCATGGAACATTCTCCTCTATTAATGTCGGTTTTATTGGCATCTTTAAAGGATGAAGAATCAATCGTGGCAGGACAATCAATTATTAGTGGCCAAAAATTATTTTGTGGTACCTTAAGAGAGATGACATTACAGTTGCATCGGCGAGGTAAAGTTGAAAGATGGCTTGAAGAACTGTGGATGAGAATGTTGAAGTTTAAAGATGAGGTTTTGGCAGTTGCTATAGAGCCTGGTTCTGTTGGGAAGAGGTTGCTGGCTTTGAAATTTTTGGAAACATATGTTCTACTTTTTACATCCGATACAAATGATCCACAGAAAGCTATCTCAGAAGGAAGTAGGGACGTTTTTAACATTTCATGGCTAGATGGTGGGTTTCCTATTTTGGATCCAGTTGGGCTAATGTCAGAAGCTAATAGGATGCTTGGTATTCTGTTGAATTTGTTGCAGACCAGTTCTGTTCCTGGTACATACACAGTAACAGTTGTCAAAAATGGAGTAGCAATGCTAGATGGTGTTAGACTGCAAAATTATTTGGGTACTTCGGAGCACCAGTGGCCAGGGATAGGAATGGATAACTGGTGCAATGATTACCTTATTTTAGCAGCTATAGCAAGGAAAAGACCAGTTCATTATGGTAACATTTTGTCAGCACTGCTGGAATTTGTTCCAAGTTTTGAGACGATAAGAGGGCGTCATGCTGCCAGCATACAGTATTCTATAAGATCTGCCCTTTTGGGATTCCTAAGGTGTATGCATCCGGCTTTTGTAGAGTCAAGAGATAGATTGCTAAAGGCTTTAAGAGCTATAAATGCTGGAGACGCTGCAGATCAAGTAATCAGGCAAGTGGACAAAATGGTGAAAGCTGCAGATCGAGCTTCACGTGATGCTTGGCTGGGCAAGGATGACCAATCTTCAAATCAGCTTAATGCATCAGTGGATCTAACAAGAAAAAGACCTAGGCTTCTGGACGACGATGATCTTCCCAATGGTCGAGAGGCTTCCAAGCAATTCCGCTTTGGTCCAGATGTTCACCCAATTTCCACTTCTCAAAAAGATGGTTCTCTTCAGAATGCCACCTCTAATGGGACATCCCACGATGTTCCTACGTTAGATGTTGAACTGACTCCTGCAGAGCAAATGATTGCGATGATTGGTGCCTTACTTGCTGAAGGGGAGCGAGGTGCAGAGTCGCTTGAAATTTTGATTTCAAATATTCATCCCGACTTGTTGGCTGATATTGTCATAACTAACATGAAGAACTTGCCCAAAGCTTCCCTTCCTTTATCTTGGCATGGGGACTTGCCTGTAACTCGACAAGGAAGTAGTCATGTACAGGTTCTGGTGCCATCAGCCCCACTGAGTTCTGTGCAAACTTCAGTTGCTACTGCACAAGTTCCTTTTTCTTCGGCCACCTCAGCTGGTTCAACTTTTGCTGAGTCTACTGTCAATAGTCTCCCCGTTGATTCTAAACGTGATCCAAGAAGGGATCCCCGCCGCCTTGATCCTCGTCGTGGAGGAGTATCTTCTGCTTCTAATGTGGAAGAGGCAAGTTCAAATACATCTGATGTTGATGGCTCCATATCTTTGGGAAAATCTGCTTCGGTTCCAGTTCCTGTGACAATCGAGAATTCTTCGGTATCTCTTATATCAAAAACGAATGTTGAAGAAAAAATTATGGAGACTCAATTCGTGTTTGGAACAGATCAATCAACCCCCAAATCCAGATCTCCCGATAGACCTGAGAAAGCCGACTCTATCTTAGACATTAATGCCCCTCTGGATCCTATGCCTACTACTGTCGAAAAAGCTGATGATGGTTTAGTTGCAGTTAACTTGTTTGATGACTTGGCAACTAAGAGGGATGATACATCATCTTCTATAGAATACAATCAGTATTCTCCATCAGTTACAAATGCAGCTGCTTCTGAAGATACCTGTGAGGAGTTGCCTTTGCTTCCACCATACGTTGACTTGACTCCAGAACAGCAAACAACTGTAAGAAATTTGGCAGCTGAAAAGATATTTGATTCATGCAAGAATTTAAATGGGGCAGACTGTCATCAGATACGCTTGGCAATAATTGCTCGATTGGTTGCTCAGTGGAAAGGACATGTCACATCTGCTTCATGTTATAATGATTATCTCTGCCAATTGCAATATTGCTTTTGTACTCTGTATCATCCCATTCAACTACAGAATGCAGTTGGTGCTGATGATGATATTGTTCGAATGTTGGAAAAGCAAGTTGCTGTCGACTACCAACAGCAAAAGGGACATGAGCTTGCTTTGCATGTCTTATATCACCTGCATTCACTTGATATTCTGGATTCAGTGGAAAGTTCTTCTTTCGCTGTGTATGAGAAGTTTCTTCTAGTTGTGGCTAAATCGTTGCTAGATGCTTTTCCAGCTTCGGACAAATCTTTTAGTAGACTTCTTGGTGAAGTTCCAGTTTTGCCGGACTCTACCTTGGAACTATTACATAACCTTTGCTATTGTGATATTACTGACAACCAGGGGAAGGGTTCTCCTGATATTGAACGTGTCACACAAGGCCTTGGCACTGTTTGGAATTTGATTGTGAAGCGTCCATATAGTCGGCAAGCTTGCTTAGATATTGCTCTGAAGTGTGCTATGCATTCAGAAGTTAAGGTTCGAGCAACAGCTATTAGACTGGTGGCAAACAAACTCTACCGGTTAAGTTACATTTCAGATAGGATTGAGCAACATGCAACAAACATGTTCCTGTCCGCAGTAGATGACATAGATCAGACAGATGTAGAGCCTTCGCCACATGGATCAATTGAACAAAGAACTGCAGGAAAGGGTGAGAGTCAGGAAACATCCGTTGGTGGTTCTCAAGTGTCAGACCCCGGAACCTCAGAAAACGATTCAATGAAGAGTTCACAACCTACATTACATGGCAGTTCAACCTTGTCACTTTCAGAAGCCGAAAGACATATTTCTCTTCTTTTTGCTCTATGCATGAAGAAACCTTGTCTGCTTCGGTTTGTATTTGATGCTTATGGACGGGCTCCTAGAGCAGTGAAAGAGGCCGTTCATGAACATATCCCTAATCTTATTACGGCCCTAGGGTCATCTGATTCTGACTTGCTTAGAATAATATCAGATCCACCTCCAGGAAGTGAACATCTGTTAGCATTGGTACTACAGGTACTAACTCAAGAGACGACGCCTTCTTCTGATCTGATTGCAACTGTTAAACATTTATATGAAACTAAACTGAAGGATGTGACGATTCTCATTCCAATGTTGTCCTCACTTTCCAAAAATGAGGTTTTACCTGTTTTTCCTCGGCTGGTTGATCTTCCATTAGAGAAGTTTCAGAGAGCATTGGCTTACATATTACAGGGTTCAGCACATACACGCCCAGCCTTAACACCTGTTGAAGTATTGATTGCCATCCACAACATAATTCCTGAAAAAGACGGCCTTCCATTAAAGAAGATAACTGGGGGTATGTCGATGTATGTATTTTCCTTTGCATTCAGCCCTGTAGGCATATTGAAAAGGATTAAATTGCTGCAATATACATGGATACACTCACATCTCAATGTTTCTTCTACCAAGGACGCCTTTCCTCCTCCCATCATGGGTACCCTGCTGGACATGACATCTCTTCTCAATGTTCTGGCAATGGCAATCTTTCCTCTTCATCACTCTCTGAGAGAACTAGGTAGAGATGAATTAGAGAACAACATTTTTGTCTTTAATGGCTGGCAGCAGATGAAGGCATTAGATTTTCAAATTGGTCTAGACTCTTCTCATTTGTTTTCTCCCCATAAGCGTCCTAACAGAACTGCACGAATCAATTATACATGGAGTTCAAGAACCTTCGCTTCTCTCCGACAAGTCTACATTTTACAAATAACTTCTCAGGATCCCTTCACTTATCATGGTTCCCTCCGAACTGCATTGTTCCTTCACTGGCCTGTAATTCCTCTCTTGCCTGAAATATGCAAGGACTGGTGGACTCCTAACATCTTGATAACGGATGCTTGTTCAGCTTGTTTCGAGCAACGAACAGTTTTCACTCAGCAGGTTTTAGCAAAAGCCTTGAGCCAGATGGTTGAACAAACTCCACTCCCTCTTCTCTTCATGAGAACTGTGATTCAGGCAATTGATGCTTTTCCTTCTCTGGTTGATTTCGTCATGGAGATACTTTCCAAACTTGTAAACAGACAGGTCTGGAGGATGCCAAAATTGTGGTTTGGTTTTTTGAAATGTGCATTTCAAACACAGCCTCATTCCTTTCGAGTACTATTACAGTTACCACCGGCACAACTTGAAAATGCTTTGAATAAATATGTTAACCTTAAAGGTCCTCTTGCTGCTTATGCCAGCCAGCCCAGCACAAAGTCTACTCTCTCTAGGACAAATATCATTGGTTCACATCTCGACTTCGGAGTAGTAAAACAGCGAGCCTCCAGAACCTGGGAATCGACTAATCAGCTCTTTGGAGTAGGAGGCGATTTATCCTCCGACATGGTCATGGTCTCTGTCAGCTTTATCAGTAATCCTGTGGCAGTTTGA 5028 42.76 MSCGMWASIDCSDSQMDLTHMAVVSSARLNSLTTTPLRLFLPSVSCSFPSRNKIPCSFQSLTPPQFTPIAIFVSQLVFPSRSTMAGVLRERALSLLAAANNHGDLTVKISSLKQVKDIILAIEPSFAAELYSYLVELQSSPESLLRKLLIEVIEDIGLRAMEHSPLLMSVLLASLKDEESIVAGQSIISGQKLFCGTLREMTLQLHRRGKVERWLEELWMRMLKFKDEVLAVAIEPGSVGKRLLALKFLETYVLLFTSDTNDPQKAISEGSRDVFNISWLDGGFPILDPVGLMSEANRMLGILLNLLQTSSVPGTYTVTVVKNGVAMLDGVRLQNYLGTSEHQWPGIGMDNWCNDYLILAAIARKRPVHYGNILSALLEFVPSFETIRGRHAASIQYSIRSALLGFLRCMHPAFVESRDRLLKALRAINAGDAADQVIRQVDKMVKAADRASRDAWLGKDDQSSNQLNASVDLTRKRPRLLDDDDLPNGREASKQFRFGPDVHPISTSQKDGSLQNATSNGTSHDVPTLDVELTPAEQMIAMIGALLAEGERGAESLEILISNIHPDLLADIVITNMKNLPKASLPLSWHGDLPVTRQGSSHVQVLVPSAPLSSVQTSVATAQVPFSSATSAGSTFAESTVNSLPVDSKRDPRRDPRRLDPRRGGVSSASNVEEASSNTSDVDGSISLGKSASVPVPVTIENSSVSLISKTNVEEKIMETQFVFGTDQSTPKSRSPDRPEKADSILDINAPLDPMPTTVEKADDGLVAVNLFDDLATKRDDTSSSIEYNQYSPSVTNAAASEDTCEELPLLPPYVDLTPEQQTTVRNLAAEKIFDSCKNLNGADCHQIRLAIIARLVAQWKGHVTSASCYNDYLCQLQYCFCTLYHPIQLQNAVGADDDIVRMLEKQVAVDYQQQKGHELALHVLYHLHSLDILDSVESSSFAVYEKFLLVVAKSLLDAFPASDKSFSRLLGEVPVLPDSTLELLHNLCYCDITDNQGKGSPDIERVTQGLGTVWNLIVKRPYSRQACLDIALKCAMHSEVKVRATAIRLVANKLYRLSYISDRIEQHATNMFLSAVDDIDQTDVEPSPHGSIEQRTAGKGESQETSVGGSQVSDPGTSENDSMKSSQPTLHGSSTLSLSEAERHISLLFALCMKKPCLLRFVFDAYGRAPRAVKEAVHEHIPNLITALGSSDSDLLRIISDPPPGSEHLLALVLQVLTQETTPSSDLIATVKHLYETKLKDVTILIPMLSSLSKNEVLPVFPRLVDLPLEKFQRALAYILQGSAHTRPALTPVEVLIAIHNIIPEKDGLPLKKITGGMSMYVFSFAFSPVGILKRIKLLQYTWIHSHLNVSSTKDAFPPPIMGTLLDMTSLLNVLAMAIFPLHHSLRELGRDELENNIFVFNGWQQMKALDFQIGLDSSHLFSPHKRPNRTARINYTWSSRTFASLRQVYILQITSQDPFTYHGSLRTALFLHWPVIPLLPEICKDWWTPNILITDACSACFEQRTVFTQQVLAKALSQMVEQTPLPLLFMRTVIQAIDAFPSLVDFVMEILSKLVNRQVWRMPKLWFGFLKCAFQTQPHSFRVLLQLPPAQLENALNKYVNLKGPLAAYASQPSTKSTLSRTNIIGSHLDFGVVKQRASRTWESTNQLFGVGGDLSSDMVMVSVSFISNPVAV 1675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28167195 28195446 + ClCG11G014870.1 Cla11g01454 285276

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01454 1675 MobiDBLite consensus disorder prediction 1084 1136 - -
Cla11g01454 1675 MobiDBLite consensus disorder prediction 506 527 - -
Cla11g01454 1675 Gene3D - 81 456 IPR011989 -
Cla11g01454 1675 Pfam Symplekin tight junction protein C terminal 1495 1600 IPR022075 -
Cla11g01454 1675 Pfam Symplekin tight junction protein C terminal 1242 1368 IPR022075 -
Cla11g01454 1675 MobiDBLite consensus disorder prediction 458 472 - -
Cla11g01454 1675 Pfam Symplekin/PTA1 N-terminal 182 435 IPR032460 -
Cla11g01454 1675 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 84 860 - -
Cla11g01454 1675 MobiDBLite consensus disorder prediction 637 690 - -
Cla11g01454 1675 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 1495 1625 - -
Cla11g01454 1675 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 84 860 - -
Cla11g01454 1675 MobiDBLite consensus disorder prediction 647 662 - -
Cla11g01454 1675 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 890 1318 - -
Cla11g01454 1675 MobiDBLite consensus disorder prediction 455 527 - -
Cla11g01454 1675 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 1495 1625 - -
Cla11g01454 1675 SUPERFAMILY ARM repeat 94 1553 IPR016024 -
Cla11g01454 1675 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 890 1318 - -
Cla11g01454 1675 MobiDBLite consensus disorder prediction 669 687 - -
Cla11g01454 1675 MobiDBLite consensus disorder prediction 1097 1136 - -
Cla11g01454 1675 MobiDBLite consensus disorder prediction 475 491 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01454 K06100 SYMPK; symplekin - csv:101202828 1991.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00702 Cla-Chr4:21905669 Cla11g01454 Cla-Chr11:28167195 8.38E-45 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g566 . . . . . . . . . . . Cma09g00609 . . . Cpe06g00470 . . . . . . . . . . . . . . . Cone4ag1271 . . . Lsi04g02305 Csa03g04524 . . . . . . . . . . . . Cmo09g00597 . . . Car09g00540 . Cpe02g00494 Bhi09g02542 Tan01g3889 . . . . . Cla11g01454 Cam11g1507 Cec11g1545 Cco11g1540 Clacu11g1672 Cmu11g1488 Cre11g1908 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004558 1 4 1 1 1 0 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 3 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01454 Cla_Chr11 FPKM 36.050381 35.582386 36.222569 33.956783 43.194565 44.507675 37.862194 46.494888 42.209248 42.847988