Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01461 ATGTCTGCTCCATTGACTCCCTCAAAGAGATCACGTGATCGAAGCTTTGTCAAGTCTAATGGGAAAGGAAAGTGGCAAAAGTCATCAGGTTCTCGTTCGCAAAATCAATCCTTGAAATTGTCTCCTGGCTACGCTGTCTTTCGTGTGCTCTTTCCCGTTTCCAGAATTGGCAGCCTTGTAGGTAAAGATGGGGACGCTTTATCTAAAATTCGGGAAGAAACAGGTGTAGAAATCAGAGTAGAGGACGCTGTTCCTGGATGTGATGAGAGAATAGTAATAATTGGAGGCTCTAATCAAGAAACTGAAGTGAGCACTGAGCAGAAGGGTAAGGAAGACAACAAAAATTCTGAAGTCGAGGAGAATGATGATGATATTGCCAAGTCGAAAAAGAAGGAAGATAAAGATTCTCCTCCTGTGGAAGATGCTAAACAGAAGGAGGTTTCTCATTTGCGAAAAGCCCTCTTTCTTGTTTCTGAGAAAATCTTTGATGAAGAACCGGAGGCAGATGGGACATCTGTTGAAGGTGATAAGACATTTGTCTTAAGATTGCTTGTTCTTTCTAGTCAAGTTGGGTGCCTATTGGGAAAGGGTGGCAGTGTAGTCAAACAAATGTCATCTGATAGTGGAGCGCAAATTAGAATTCTTCCCAGGGATAAACTTCCTCCGCTTGCAACGACTAATAATGAGCTAGTCCAGATTAGTGGAGGAATTGATGTGGTGAAGAAAGCTCTTGAACTTGTTTTTCAGCAGCTAATGGAAAATTCACCCAATGATAAAGATCCTGTTGCCTTAAGCAATGCTGCACAGTCATCACATTCTTCTGGACTGTCTCTCTCTAGGGCTCATGAATCTCCTCTGGGTAGTAGTTCTTTTAATACTCATGGAGGCCCGTACTCTGTGCCTCGTGATGTTGGCAATTCTCATTTCAGTGCACCTTCTCTTGCTCCTAAACAGTATGAAAGCAGCATTCCTGGTCGAAGCAAACCTTCTCATGAAATTTTGAGTTATCGTTTATTATGCCCATCTGAGAGAGTTGGAAATGTGATTGGAAAAGGAGGAGCAGTAGTTAAGACTCTTCAGCAAGACACGGGCTGTGACATCAAAGTTGTTGAAGGTGCCTTGGACTCAGAAGACCGCATTATACTTGTAGCTGGTCCTGCGCATCCAGACGACAGAATATCACCAGTGCAAGACGCTGTTTTTCGTGTTCAGGCCAGGATTGTCAAAGCTGTACCAGAGGGCAAGGAGCAGAACTTGGTAGCTAGGTTTCTTGTTTCCTCCAATCAAATTGGTTGTCTTCTTGGGAAGGGTGGCTCCATCATAGCTGAAATGAGAAAGTCGACTGGTGCATATATTCGTATTTTAGGAAAGGAGCAGATTCCTAAGTGTGCTGGGGAGGATGAAGAAGTGGTTCAGATAAATGGAGAGCCTGAAACAGTTCAAGATGCCATGTTGCAGATTACTACTCGGCTGAGGCATCATTTTTTCCGTGATGCATTTCCATCAGTTAATAGTCATCCGAATCCTGCATTCATAGATAGACTTCCCTCATTTCCATCATATTTTGGAAGGAGAGAATTATCACCTCCAGGAATTTATTCAAGTTTAGGCCCCTCATTTCACAAGTTTGATGCTCTTAGTGGCATTCCTTCACTTAGTGATTTGCGGGATGATCGACCTCCTTTTCTTCATAGGTCAGGTGCTCCTCTGTTATCTGATAGAAAGCCATGGAACTCTCAGGGATTAGTTGAAGGTGGTGTTGGCTTGTCAGACTTTGCAGGAGCCCATCATAGAAGACTTGCTGGATTTGGAGGAGGAAATAATCCAGCTATTATTACGAGCACCACTGTTGAAGTAGTTGTTCCTCGAAACCTTGTCCCTGTCATTTGTGGAGAAAATGGTGAATGTTTGAAACAGATTCGACAGATTTCTGATGCAAAAATTACAATTACCGAGCCAAAGCAAGGAGAAGTTGAAACTATGATTATAATTTCTGGAACGCCTGAGCAGACCCATGCTGCCCAGACGAGACCGAGTCTAGTTGATTTCTTATATTCAGGTATACGACGTCTACTTTCTTATCTCTGGGCTGATTGTTTTGGAGAAAGGATGTTGAACAGACGAGTATTAACTGCCGATACGCCTTGGAGCAGTTAG 2157 43.16 MSAPLTPSKRSRDRSFVKSNGKGKWQKSSGSRSQNQSLKLSPGYAVFRVLFPVSRIGSLVGKDGDALSKIREETGVEIRVEDAVPGCDERIVIIGGSNQETEVSTEQKGKEDNKNSEVEENDDDIAKSKKKEDKDSPPVEDAKQKEVSHLRKALFLVSEKIFDEEPEADGTSVEGDKTFVLRLLVLSSQVGCLLGKGGSVVKQMSSDSGAQIRILPRDKLPPLATTNNELVQISGGIDVVKKALELVFQQLMENSPNDKDPVALSNAAQSSHSSGLSLSRAHESPLGSSSFNTHGGPYSVPRDVGNSHFSAPSLAPKQYESSIPGRSKPSHEILSYRLLCPSERVGNVIGKGGAVVKTLQQDTGCDIKVVEGALDSEDRIILVAGPAHPDDRISPVQDAVFRVQARIVKAVPEGKEQNLVARFLVSSNQIGCLLGKGGSIIAEMRKSTGAYIRILGKEQIPKCAGEDEEVVQINGEPETVQDAMLQITTRLRHHFFRDAFPSVNSHPNPAFIDRLPSFPSYFGRRELSPPGIYSSLGPSFHKFDALSGIPSLSDLRDDRPPFLHRSGAPLLSDRKPWNSQGLVEGGVGLSDFAGAHHRRLAGFGGGNNPAIITSTTVEVVVPRNLVPVICGENGECLKQIRQISDAKITITEPKQGEVETMIIISGTPEQTHAAQTRPSLVDFLYSGIRRLLSYLWADCFGERMLNRRVLTADTPWSS 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28281865 28286300 - ClCG11G014940.2 Cla11g01461 285283

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01461 718 Gene3D K Homology domain, type 1 333 412 IPR036612 GO:0003723
Cla11g01461 718 ProSiteProfiles Type-1 KH domain profile. 178 247 - -
Cla11g01461 718 SMART kh_6 43 113 IPR004087 GO:0003676
Cla11g01461 718 SMART kh_6 613 683 IPR004087 GO:0003676
Cla11g01461 718 SMART kh_6 332 412 IPR004087 GO:0003676
Cla11g01461 718 SMART kh_6 177 252 IPR004087 GO:0003676
Cla11g01461 718 SMART kh_6 417 492 IPR004087 GO:0003676
Cla11g01461 718 CDD PCBP_like_KH 46 97 - -
Cla11g01461 718 Pfam KH domain 181 247 IPR004088 GO:0003723
Cla11g01461 718 Pfam KH domain 336 386 IPR004088 GO:0003723
Cla11g01461 718 Pfam KH domain 421 487 IPR004088 GO:0003723
Cla11g01461 718 Pfam KH domain 616 676 IPR004088 GO:0003723
Cla11g01461 718 Pfam KH domain 47 100 IPR004088 GO:0003723
Cla11g01461 718 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 614 676 IPR036612 GO:0003723
Cla11g01461 718 MobiDBLite consensus disorder prediction 1 38 - -
Cla11g01461 718 CDD PCBP_like_KH 335 404 - -
Cla11g01461 718 CDD PCBP_like_KH 420 488 - -
Cla11g01461 718 MobiDBLite consensus disorder prediction 258 296 - -
Cla11g01461 718 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 414 498 IPR036612 GO:0003723
Cla11g01461 718 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 1 554 - -
Cla11g01461 718 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 40 100 IPR036612 GO:0003723
Cla11g01461 718 MobiDBLite consensus disorder prediction 104 146 - -
Cla11g01461 718 MobiDBLite consensus disorder prediction 258 327 - -
Cla11g01461 718 Gene3D K Homology domain, type 1 415 495 IPR036612 GO:0003723
Cla11g01461 718 Gene3D K Homology domain, type 1 176 255 IPR036612 GO:0003723
Cla11g01461 718 ProSiteProfiles Type-1 KH domain profile. 44 108 - -
Cla11g01461 718 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 172 253 IPR036612 GO:0003723
Cla11g01461 718 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 335 410 IPR036612 GO:0003723
Cla11g01461 718 PANTHER KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE 1 554 - -
Cla11g01461 718 ProSiteProfiles Type-1 KH domain profile. 614 678 - -
Cla11g01461 718 MobiDBLite consensus disorder prediction 21 38 - -
Cla11g01461 718 MobiDBLite consensus disorder prediction 95 146 - -
Cla11g01461 718 ProSiteProfiles Type-1 KH domain profile. 333 400 - -
Cla11g01461 718 ProSiteProfiles Type-1 KH domain profile. 418 487 - -
Cla11g01461 718 CDD PCBP_like_KH 180 248 - -
Cla11g01461 718 Gene3D K Homology domain, type 1 612 679 IPR036612 GO:0003723
Cla11g01461 718 Gene3D K Homology domain, type 1 45 106 IPR036612 GO:0003723
Cla11g01461 718 CDD KH-I 616 677 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01461 K21444 PCBP3_4; poly(rC)-binding protein 3/4 - csv:101221201 1192.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01584 Cla-Chr9:31611809 Cla11g01461 Cla-Chr11:28281865 6.68E-89 dispersed
Cla09g01771 Cla-Chr9:35085205 Cla11g01461 Cla-Chr11:28281865 1.52E-70 dispersed
Cla11g01146 Cla-Chr11:23870559 Cla11g01461 Cla-Chr11:28281865 8.01E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g580 Blo01g01784 . . . Bpe02g00157 . . Bma01g02568 . . . Cma09g00613 . . . Cpe06g00474 . . . . . . . . . . . . . . . Cone4ag1264 Cone7ag0879 . . Lsi04g02311 Csa03g04530 Chy04g00173 . . . Bda11g00816 . . . . . Sed05g1523 Cmo01g01505 Cmo09g00601 . . . Car09g00545 . Cpe02g00498 Bhi09g02548 Tan01g3895 Cmetu04g0312 . Hepe01g2200 . . Cla11g01461 Cam11g1513 Cec11g1551 Cco11g1546 . Cmu11g1494 Cre11g1915 . . . Cme04g00201
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007521 1 1 1 1 1 0 3 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01461 Cla_Chr11 FPKM 20.627382 20.044039 20.090927 19.740311 24.315428 23.299671 24.917093 30.562803 29.348972 34.162601