Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01470 ATGTCGTGGCAACCGTATGTTGATGAGCACTTGATGTGCGACATTGGAGGCAATCGTCTCTCTGCTGCTGCGATCATTGGCCAAGACGGCACTGTTTGGGCTCAGACCCCCAATTTTCCTCAGTTGAAGCCAGAAGAGTTAATAGCCATTATGAATGATTTTGAGCAACCTGGATCACTTGCCCCAACTGGTTTGTTCCATGGTGGGACTAAGTACATGGTTATTCAAGGTGAACCCGGTGCTGTCATAAGAGGGAAAAAGGGTGGTGGCGGGATTACTATTAAGAAGACTAATCTGGGTTTGATCATTGGTATTTATGATGAGCCTGTAACTCCTGGTCAGTGCAACATGATCGTCGAAAGGCTAGGCGATTACCTGATCGAGCAGGGACTGATTTGCCTGATGAGTACTGAAGTCAGTAATATGATCCTTAGAAAGCTGCCAGAAGTTGTAAAAATTATACTTGATGCTCCATCTAATTATTACTATGATTTTGGACTATCAGGTCAGCTACTGAGGTTGCAGCCAGACTTCGTTTAA 540 44.63 MSWQPYVDEHLMCDIGGNRLSAAAIIGQDGTVWAQTPNFPQLKPEELIAIMNDFEQPGSLAPTGLFHGGTKYMVIQGEPGAVIRGKKGGGGITIKKTNLGLIIGIYDEPVTPGQCNMIVERLGDYLIEQGLICLMSTEVSNMILRKLPEVVKIILDAPSNYYYDFGLSGQLLRLQPDFV 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28339638 28341521 + ClCG11G015030.1 Cla11g01470 285292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01470 179 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Cla11g01470 179 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Cla11g01470 179 CDD PROF 2 130 IPR005455 GO:0003779
Cla11g01470 179 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Cla11g01470 179 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Cla11g01470 179 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
Cla11g01470 179 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Cla11g01470 179 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Cla11g01470 179 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Cla11g01470 179 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Cla11g01470 179 PANTHER PROFILIN 1 131 IPR005455 GO:0003779
Cla11g01470 179 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Cla11g01470 179 PANTHER PROFILIN-2 1 131 - -
Cla11g01470 179 Pfam Profilin 1 130 IPR005455 GO:0003779
Cla11g01470 179 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Cla11g01470 179 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Cla11g01470 179 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Cla11g01470 179 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Cla11g01470 179 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Cla11g01470 179 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Cla11g01470 179 SMART prof_2 1 131 IPR005455 GO:0003779
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01272 Cla-Chr7:29844969 Cla11g01470 Cla-Chr11:28339638 2.95E-54 dispersed
Cla11g00182 Cla-Chr11:2171837 Cla11g01470 Cla-Chr11:28339638 8.49E-59 dispersed
Cla11g01470 Cla-Chr11:28339638 Cla09g00022 Cla-Chr9:276663 6.84E-73 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01470 K05759 - zju:107432825 222.631