Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01479 ATGATGGCTGTTACCTCCGCCTGCAAGGACGCTGCTAGCAAGATGAGCAGCTTGGATAATGGGAAGTACGTTAGGTACACACCAGAGCAAGTGGAAGCCCTTGAGAGGCTTTATTATGAATGCCCAAAACCCAGTTCTATGCGCCGCCAGCAGCTTATCAGGGAATGCCCAATTCTCTCCAATATCGAACCAAAGCAGATCAAAGTTTGGTTTCAAAATCGGAGATGTAGAGAGAAGCAGAGGAAGGAGGCATCACGACTCCAGACTGTGAACAGGAAGCTTACGGCTATGAATAGACTCCTAATGGAGGAAAATGATAGGTTGCAGAAACAGGTGTCACAGCTTGTGTATGAGAACAGCTATTTTCGTCAACAGACGCAGAATGCGACCTTAGCCACCACTGACACAAGTTGCGAGTCAGTGGTGACAAGTGGTCAACAGAATTTGACTCCGCCGCATCCACCAAAGGATGCCAGTCCCGCAGGACTTTTGTCCATTGCGGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGATGCACTGGAGTTGCTGCTCGTGCATGTGGACTTGTGGGTCTCGAACCTACAAGAGTGGCTGAAAGTCTTAAAGATTGGCCTTCTTGGTTTCGAGATTGCCGTGCCGTTGATGTTCTAAACGTCCTATCTACTGGAAATGGAGGAACCATTGAGCTTCTATACATGCAGCTCTATGCACCTACTACTTTGGCACCTGCTCGTGATTTCTGGCTGCTGCGATACACATCTGTTTTGGAGGATGGTAGTCTTGTGGTCTGTGAGAGATCTCTTAACAATACTCAGAATGGTCCAAGTATGCCTACAGTCCAGAACTTTGTAAGAGCAGAAATGCTACCAAGTGGCTATTTGATAAGACCTTGTGAAGGTGGTGGATCAATAATCCATATAGTTGATCACATGGACTTAGAACCTTGGAGTGTACCTGAAGTGTTGCGGCCATTATACAAGTCATCTACTCTGCTTGCTCAGAAGAACACAATGGCAGCATTACGCTTGCTGAGACAGATTTCACAAGAAGTTTCTCAACCAAATGTTACTGGTTGGGGAAGAAGACCTGCTGCACTTCGTGCTCTTAGCCAAAAATTGAGCAGAGGTTTCAATGAAGCAGTTAATGGGTTTACAGACGAGGGATGGTCTTTGTTAGAAAATGATGGCATTGATGATGTTACACTTCTTGTAAACATGTCTCATGGCAAGACAATGATGGGTGCAAATATTTCATATTCTAATGGCTTTCCATCCATGAGCAACGCAGTGCTTTGTGCCAAAGCGTCGATGTTATTACAGAATGTTACTCCAGCAATGCTCATCAGGTTCTTAAGAGAACACCGGTCGGAATGGGCAGACAGTAGTATTGATGCTTACTCAGCAGCAGCAATTAAGACCGGTCAGTGTGGTTTACCAGGGTCTCATGCTGGAACTTTTGGGGGTCAGGTTATTCTTCCCTTGGCACAAACAGTTGAGCATGAAGAGTTTATGGAAGTTGTTAAATTTGAAAACGTGGGCCACTATAGGGACGATATGCTCATGCCTGGTGACATCTTCCTTCTCCAACTTTGCAATGGTGTGGAGGAGAATGCAGTTGGTACGTCTGCTGAACTCATCTTTGCTCCAATTGATGCCTCCTTTTCTGATGATGCACCAATTCTACCATCTGGCTTCCGCATCATTCCACTCGATTCTGGGATGGATGCTTCAAGTCCAAACCGCACACTTGATCTTGCTTCAGCTCTTGATGTTGGACCTGCAGGGAATAGAACTTCTGGTGATTGTGCTGGTCAATCAGGAAATTCAAAATCTGTGATGACAATTGCATTCCAATTTGTATTTGATGTTCACCTTCAAGATAATGTAGCCGCAATGGCACGACAGTATGTCAGGAGCATTATAGCATCTGTCCAGAGGGTGGCACTGGCTCTTTCCCCTTCGAATTTCGGTCCTCATGCTAACCTTCAGACACCAGCTGGTGCTCCTGAAGCACAGACGCTTGCTCGTTGGATCTCTCAAAGCTATAGGTGCTATATGGGCATGGAGTTACTGAAGAATGAAGGAAGAGAATCCGTTCTCAAATCCCTTTGGCATCACTCAGATGCAGTCATGTGCTGCTCTTTGAAGGCATTGCCAAATTTTACATTTGCAAATCAATCTGGACTTGACATGCTTGAGACAACCTTGGTGGCTCTCCAAGACATTACTCTGGAGAAGATTTTTGATGACAATGGAAAGAAAACTTTAGCCTCAGAGTTCCCGCGGATAATGCAGCAGGGCTTCCTTTGTCTTCAAGGCGGTGTCTGCTTATCAAGCATGGGAAGGGCAGTGTCCTATGAGAAAGCTGTGGCATGGAAGGTTTTGAATGAAGAAGAAAACGCCCACTGTATTTGCTTCATGTTTATGAACTGGTCTTTTGTTTGA 2529 45.67 MMAVTSACKDAASKMSSLDNGKYVRYTPEQVEALERLYYECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNRLLMEENDRLQKQVSQLVYENSYFRQQTQNATLATTDTSCESVVTSGQQNLTPPHPPKDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAESLKDWPSWFRDCRAVDVLNVLSTGNGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPTVQNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYKSSTLLAQKNTMAALRLLRQISQEVSQPNVTGWGRRPAALRALSQKLSRGFNEAVNGFTDEGWSLLENDGIDDVTLLVNMSHGKTMMGANISYSNGFPSMSNAVLCAKASMLLQNVTPAMLIRFLREHRSEWADSSIDAYSAAAIKTGQCGLPGSHAGTFGGQVILPLAQTVEHEEFMEVVKFENVGHYRDDMLMPGDIFLLQLCNGVEENAVGTSAELIFAPIDASFSDDAPILPSGFRIIPLDSGMDASSPNRTLDLASALDVGPAGNRTSGDCAGQSGNSKSVMTIAFQFVFDVHLQDNVAAMARQYVRSIIASVQRVALALSPSNFGPHANLQTPAGAPEAQTLARWISQSYRCYMGMELLKNEGRESVLKSLWHHSDAVMCCSLKALPNFTFANQSGLDMLETTLVALQDITLEKIFDDNGKKTLASEFPRIMQQGFLCLQGGVCLSSMGRAVSYEKAVAWKVLNEEENAHCICFMFMNWSFV 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28421149 28428030 - ClCG11G015110.2 Cla11g01479 285301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01479 842 CDD START_ArGLABRA2_like 160 375 - -
Cla11g01479 842 CDD homeodomain 22 82 IPR001356 GO:0003677
Cla11g01479 842 ProSiteProfiles 'Homeobox' domain profile. 17 81 IPR001356 GO:0003677
Cla11g01479 842 Gene3D - 14 88 - -
Cla11g01479 842 ProSiteProfiles START domain profile. 156 370 IPR002913 GO:0008289
Cla11g01479 842 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 842 IPR044830 GO:0003700
Cla11g01479 842 Coils Coil 91 118 - -
Cla11g01479 842 CDD bZIP 74 113 - -
Cla11g01479 842 SUPERFAMILY Bet v1-like 165 375 - -
Cla11g01479 842 Pfam START domain 166 374 IPR002913 GO:0008289
Cla11g01479 842 SMART HOX_1 19 85 IPR001356 GO:0003677
Cla11g01479 842 Pfam MEKHLA domain 701 841 IPR013978 -
Cla11g01479 842 Gene3D - 201 376 IPR023393 -
Cla11g01479 842 SUPERFAMILY Homeodomain-like 21 84 IPR009057 -
Cla11g01479 842 SMART START_1 165 375 IPR002913 GO:0008289
Cla11g01479 842 PANTHER CLASS III HD-ZIP PROTEIN CNA1 6 842 - -
Cla11g01479 842 Pfam Homeodomain 22 80 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00009 Cla-Chr9:127599 Cla11g01479 Cla-Chr11:28421149 0 dispersed
Cla11g01479 Cla-Chr11:28421149 Cla05g00193 Cla-Chr5:1738233 1.27E-22 dispersed
Cla11g01479 Cla-Chr11:28421149 Cla01g02453 Cla-Chr1:38229879 0 transposed
Cla11g01479 Cla-Chr11:28421149 Cla03g00588 Cla-Chr3:6693553 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62064 PF01852 START 1.80E-53 CL0209 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01479 K09338 - csv:101218438 1663.28