Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01481 ATGGAAGGAGCTGAATATTTCCAGCCCGGTTTTTGCTCTCAATTCGCCAACGAAAACCGCCAGTCCTCCGATGCAAATAAAACCACCGTCCTACCACCTTCCGCCACTGCTGACCATTTCATTGTTGAGGACCTCTTAGACTTCTCTAATGACGACGACGTTGTCTTCACCGATGGAACTTTGGACAACCAAACTCCTACCTCTACCGATTCCTCCACTCTTACTTTACTCGATTCATGCAATTCCTACCCCAATTTTGAACAACACAACAATGCCCACAACTATAATTTCGCCGACGCTAATTTCTCCACCGACCTTGGTGTGCCGTACGATGACTTGGCGGAGCTCGAATGGCTTTCCAATTTCGTGGAAGATTCTTTCTCCACCCACGACTTGGAGAAGCTGAGTTTGATATCCGGGATGAATTCCCGGACCGACCATGACGATGACGCCTCAAAAACCTCAGAATTCCAGACCGGATTGAACCGGAACCACTCGTCATCCGGTTTCCGTCCTGAAATGACGGTACCAGCTAAAGCCGCTCGTAGCAAGCGGTCTCGGGCGGCGCCCTGCATATGGAACTCCCGATTATCCGTACTCTCCCCCACAAATTCCTCTTCCGAAACCGACGTTGTCGTCACGCTCACGCCACATCCAAACACCGCAAAGAAAACCGCCAAGAAGAAAGAAACCCCAGACGACACCTCGTCCGCCGGCAATGGGGAAGGCCGTAAATGCCTCCATTGCGCCACCGACAAAACGCCGCAGTGGCGAACGGGCCCAATGGGTCCAAAGACGTTATGTAACGCTTGTGGGGTCCGGTACAAGTCCGGTCGTCTAGTACCAGAATACCGACCGGCAGCCAGCCCCACGTTTGTACTCACAAAACACTCGAATTCTCACCGGAAAGTTATGGAACTCCGACGGCAGAAGGAGATGATGAGAGCTCAGCAACAACAGCAGTATCTTCATCATGAGAGTATGGGGTTTGATCATGTATCCAACGACGACGATTATTTGATCCATCAGCACATAGGGCCACTCTACCAATAG 1053 51.28 MEGAEYFQPGFCSQFANENRQSSDANKTTVLPPSATADHFIVEDLLDFSNDDDVVFTDGTLDNQTPTSTDSSTLTLLDSCNSYPNFEQHNNAHNYNFADANFSTDLGVPYDDLAELEWLSNFVEDSFSTHDLEKLSLISGMNSRTDHDDDASKTSEFQTGLNRNHSSSGFRPEMTVPAKAARSKRSRAAPCIWNSRLSVLSPTNSSSETDVVVTLTPHPNTAKKTAKKKETPDDTSSAGNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMMRAQQQQQYLHHESMGFDHVSNDDDYLIHQHIGPLYQ 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28444181 28445361 + ClCG11G015130.1 Cla11g01481 285303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01481 350 ProSiteProfiles GATA-type zinc finger domain profile. 240 276 IPR000679 GO:0006355|GO:0043565
Cla11g01481 350 SMART GATA_3 240 290 IPR000679 GO:0006355|GO:0043565
Cla11g01481 350 CDD ZnF_GATA 245 292 IPR000679 GO:0006355|GO:0043565
Cla11g01481 350 MobiDBLite consensus disorder prediction 155 171 - -
Cla11g01481 350 Pfam GATA zinc finger 246 279 IPR000679 GO:0006355|GO:0043565
Cla11g01481 350 PANTHER GATA TRANSCRIPTION FACTOR 1 349 - -
Cla11g01481 350 MobiDBLite consensus disorder prediction 143 182 - -
Cla11g01481 350 MobiDBLite consensus disorder prediction 216 242 - -
Cla11g01481 350 PANTHER GATA TRANSCRIPTION FACTOR 1 349 - -
Cla11g01481 350 ProSitePatterns GATA-type zinc finger domain. 246 271 IPR000679 GO:0006355|GO:0043565
Cla11g01481 350 Gene3D - 241 325 IPR013088 GO:0006355|GO:0008270
Cla11g01481 350 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 241 304 - -
Cla11g01481 350 PIRSF Txn_fac_GATA_plant 22 336 IPR016679 GO:0003677|GO:0005634|GO:0045893
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00536 Cla-Chr1:5840669 Cla11g01481 Cla-Chr11:28444181 4.45E-09 dispersed
Cla05g02146 Cla-Chr5:33065071 Cla11g01481 Cla-Chr11:28444181 1.40E-47 dispersed
Cla07g00847 Cla-Chr7:23574734 Cla11g01481 Cla-Chr11:28444181 9.72E-49 dispersed
Cla08g00768 Cla-Chr8:20039120 Cla11g01481 Cla-Chr11:28444181 3.89E-51 dispersed
Cla11g00369 Cla-Chr11:4144125 Cla11g01481 Cla-Chr11:28444181 3.66E-35 dispersed
Cla06g00722 Cla-Chr6:9234898 Cla11g01481 Cla-Chr11:28444181 4.47E-39 transposed
Cla07g01259 Cla-Chr7:29635778 Cla11g01481 Cla-Chr11:28444181 1.00E-87 transposed
Cla09g00007 Cla-Chr9:110787 Cla11g01481 Cla-Chr11:28444181 6.38E-96 transposed
Cla11g01481 Cla-Chr11:28444181 Cla08g01209 Cla-Chr8:25013061 2.72E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62065 PF00320 GATA 3.20E-15 CL0167 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01481 - - csv:101221905 587.8