Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01481 ATGGAAGGAGCTGAATATTTCCAGCCCGGTTTTTGCTCTCAATTCGCCAACGAAAACCGCCAGTCCTCCGATGCAAATAAAACCACCGTCCTACCACCTTCCGCCACTGCTGACCATTTCATTGTTGAGGACCTCTTAGACTTCTCTAATGACGACGACGTTGTCTTCACCGATGGAACTTTGGACAACCAAACTCCTACCTCTACCGATTCCTCCACTCTTACTTTACTCGATTCATGCAATTCCTACCCCAATTTTGAACAACACAACAATGCCCACAACTATAATTTCGCCGACGCTAATTTCTCCACCGACCTTGGTGTGCCGTACGATGACTTGGCGGAGCTCGAATGGCTTTCCAATTTCGTGGAAGATTCTTTCTCCACCCACGACTTGGAGAAGCTGAGTTTGATATCCGGGATGAATTCCCGGACCGACCATGACGATGACGCCTCAAAAACCTCAGAATTCCAGACCGGATTGAACCGGAACCACTCGTCATCCGGTTTCCGTCCTGAAATGACGGTACCAGCTAAAGCCGCTCGTAGCAAGCGGTCTCGGGCGGCGCCCTGCATATGGAACTCCCGATTATCCGTACTCTCCCCCACAAATTCCTCTTCCGAAACCGACGTTGTCGTCACGCTCACGCCACATCCAAACACCGCAAAGAAAACCGCCAAGAAGAAAGAAACCCCAGACGACACCTCGTCCGCCGGCAATGGGGAAGGCCGTAAATGCCTCCATTGCGCCACCGACAAAACGCCGCAGTGGCGAACGGGCCCAATGGGTCCAAAGACGTTATGTAACGCTTGTGGGGTCCGGTACAAGTCCGGTCGTCTAGTACCAGAATACCGACCGGCAGCCAGCCCCACGTTTGTACTCACAAAACACTCGAATTCTCACCGGAAAGTTATGGAACTCCGACGGCAGAAGGAGATGATGAGAGCTCAGCAACAACAGCAGTATCTTCATCATGAGAGTATGGGGTTTGATCATGTATCCAACGACGACGATTATTTGATCCATCAGCACATAGGGCCACTCTACCAATAG 1053 51.28 MEGAEYFQPGFCSQFANENRQSSDANKTTVLPPSATADHFIVEDLLDFSNDDDVVFTDGTLDNQTPTSTDSSTLTLLDSCNSYPNFEQHNNAHNYNFADANFSTDLGVPYDDLAELEWLSNFVEDSFSTHDLEKLSLISGMNSRTDHDDDASKTSEFQTGLNRNHSSSGFRPEMTVPAKAARSKRSRAAPCIWNSRLSVLSPTNSSSETDVVVTLTPHPNTAKKTAKKKETPDDTSSAGNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMMRAQQQQQYLHHESMGFDHVSNDDDYLIHQHIGPLYQ 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28444181 28445361 + ClCG11G015130.1 Cla11g01481 285303

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01481 350 ProSiteProfiles GATA-type zinc finger domain profile. 240 276 IPR000679 GO:0006355|GO:0043565
Cla11g01481 350 SMART GATA_3 240 290 IPR000679 GO:0006355|GO:0043565
Cla11g01481 350 CDD ZnF_GATA 245 292 IPR000679 GO:0006355|GO:0043565
Cla11g01481 350 MobiDBLite consensus disorder prediction 155 171 - -
Cla11g01481 350 Pfam GATA zinc finger 246 279 IPR000679 GO:0006355|GO:0043565
Cla11g01481 350 PANTHER GATA TRANSCRIPTION FACTOR 1 349 - -
Cla11g01481 350 MobiDBLite consensus disorder prediction 143 182 - -
Cla11g01481 350 MobiDBLite consensus disorder prediction 216 242 - -
Cla11g01481 350 PANTHER GATA TRANSCRIPTION FACTOR 1 349 - -
Cla11g01481 350 ProSitePatterns GATA-type zinc finger domain. 246 271 IPR000679 GO:0006355|GO:0043565
Cla11g01481 350 Gene3D - 241 325 IPR013088 GO:0006355|GO:0008270
Cla11g01481 350 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 241 304 - -
Cla11g01481 350 PIRSF Txn_fac_GATA_plant 22 336 IPR016679 GO:0003677|GO:0005634|GO:0045893
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01481 - - - csv:101221905 587.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00536 Cla-Chr1:5840669 Cla11g01481 Cla-Chr11:28444181 4.45E-09 dispersed
Cla05g02146 Cla-Chr5:33065071 Cla11g01481 Cla-Chr11:28444181 1.40E-47 dispersed
Cla07g00847 Cla-Chr7:23574734 Cla11g01481 Cla-Chr11:28444181 9.72E-49 dispersed
Cla08g00768 Cla-Chr8:20039120 Cla11g01481 Cla-Chr11:28444181 3.89E-51 dispersed
Cla11g00369 Cla-Chr11:4144125 Cla11g01481 Cla-Chr11:28444181 3.66E-35 dispersed
Cla06g00722 Cla-Chr6:9234898 Cla11g01481 Cla-Chr11:28444181 4.47E-39 transposed
Cla07g01259 Cla-Chr7:29635778 Cla11g01481 Cla-Chr11:28444181 1.00E-87 transposed
Cla09g00007 Cla-Chr9:110787 Cla11g01481 Cla-Chr11:28444181 6.38E-96 transposed
Cla11g01481 Cla-Chr11:28444181 Cla08g01209 Cla-Chr8:25013061 2.72E-112 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla08g01209 . 89 355 C2C2-Gata Transcription Factor Family AT5G25830 55.7 8.9e-69 257.7
Cla11g01481 . 40 350 C2C2-Gata Transcription Factor Family AT5G25830 50.2 8.3e-67 251.1
Cla01g01957 . 107 283 C2C2-Gata Transcription Factor Family AT4G36240 50.3 8.7e-42 167.5
Cla09g01216 . 291 807 C2C2-Gata Transcription Factor Family AT4G17570 51.7 1.1e-134 477.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62065 PF00320 GATA 3.20E-15 CL0167 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01481 Cla_Chr11 FPKM 17.807306 20.310202 50.529316 47.949535 15.043797 15.378468 14.676353 93.563782 91.425865 88.127663