Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla11g01484 | ATGTCAACAAAGGAAGAATCTCAAATTTCCCAACATTCTTCCAATAACAATCAATCCAAACCCAACAAGCGCCTTCATGCTGATTCCAGCAAGCACCCAATGTACCGCGGCGTAAGAATGCGCGCTTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCACGCAAGAAATCCCGCATTTGGCTCGGGACTTTCCCCACCCCTGAAATGGCCGCTCGAGCCCACGACGTTGCTGCCTTGTCCATCAAAGGTAATTCCGCCATTCTCAACTTCCCTGAACTCGCTCACTCCCTTCCCCGCCCTGTTTCCTTCGCCCCTCGCGACGTTCAAGCCGCCGCCGCCAAGGCCGCCCATATGGACCCTAATTTCCTCCACTACTCTCCTAATTCCCCTGTTTCCACTTCCCCCTCCTCCGCCGCCGACGACGACTCCGACGAACTCACCGAAATCGTCAAACTCCCTACTCTCGGCTCCAACTACGATCACTTCATCTCTAACAACGAGTTCGTGCTGATGGACTCGACGGAGGGATGGGTTTATCCCCCGCCTTGGTTACGAACCATGGAGGATTGCGGCTACAATACCAACAATATTATTGACGATTTGGGAATTGGGGTTGGGGATAGTAATTGCTTATGGGATTATTAA | 645 | 52.87 | MSTKEESQISQHSSNNNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFAPRDVQAAAAKAAHMDPNFLHYSPNSPVSTSPSSAADDDSDELTEIVKLPTLGSNYDHFISNNEFVLMDSTEGWVYPPPWLRTMEDCGYNTNNIIDDLGIGVGDSNCLWDY | 214 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 28476465 | 28477109 | - | ClCG11G015160.1 | Cla11g01484 | 285306 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla11g01484 | 214 | Pfam | AP2 domain | 34 | 83 | IPR001471 | GO:0003700|GO:0006355 | |
Cla11g01484 | 214 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Cla11g01484 | 214 | PRINTS | Ethylene responsive element binding protein signature | 35 | 46 | IPR001471 | GO:0003700|GO:0006355 | |
Cla11g01484 | 214 | PRINTS | Ethylene responsive element binding protein signature | 57 | 73 | IPR001471 | GO:0003700|GO:0006355 | |
Cla11g01484 | 214 | SUPERFAMILY | DNA-binding domain | 34 | 92 | IPR016177 | GO:0003677 | |
Cla11g01484 | 214 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 5 | 197 | - | - | |
Cla11g01484 | 214 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE | 5 | 197 | - | - | |
Cla11g01484 | 214 | ProSiteProfiles | AP2/ERF domain profile. | 34 | 91 | IPR001471 | GO:0003700|GO:0006355 | |
Cla11g01484 | 214 | SMART | rav1_2 | 34 | 97 | IPR001471 | GO:0003700|GO:0006355 | |
Cla11g01484 | 214 | CDD | AP2 | 35 | 93 | IPR001471 | GO:0003700|GO:0006355 | |
Cla11g01484 | 214 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cla11g01484 | 214 | Gene3D | AP2/ERF domain | 34 | 92 | IPR036955 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla06g00895 | Cla-Chr6:13807124 | Cla11g01484 | Cla-Chr11:28476465 | 2.75E-65 | dispersed | |
Cla07g01261 | Cla-Chr7:29684996 | Cla11g01484 | Cla-Chr11:28476465 | 3.60E-49 | dispersed | |
Cla09g00162 | Cla-Chr9:1696022 | Cla11g01484 | Cla-Chr11:28476465 | 2.94E-52 | dispersed | |
Cla10g00239 | Cla-Chr10:2869126 | Cla11g01484 | Cla-Chr11:28476465 | 1.05E-42 | dispersed | |
Cla10g01829 | Cla-Chr10:34256760 | Cla11g01484 | Cla-Chr11:28476465 | 1.99E-27 | dispersed | |
Cla11g00204 | Cla-Chr11:2372697 | Cla11g01484 | Cla-Chr11:28476465 | 4.40E-53 | dispersed | |
Cla11g01484 | Cla-Chr11:28476465 | Cla08g01223 | Cla-Chr8:25148826 | 4.06E-69 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
62066 | PF00847 | AP2 | 7.90E-14 | CL0081 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla11g01484 | K09286 | - | csv:101217333 | 275.018 |