Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01484 ATGTCAACAAAGGAAGAATCTCAAATTTCCCAACATTCTTCCAATAACAATCAATCCAAACCCAACAAGCGCCTTCATGCTGATTCCAGCAAGCACCCAATGTACCGCGGCGTAAGAATGCGCGCTTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCACGCAAGAAATCCCGCATTTGGCTCGGGACTTTCCCCACCCCTGAAATGGCCGCTCGAGCCCACGACGTTGCTGCCTTGTCCATCAAAGGTAATTCCGCCATTCTCAACTTCCCTGAACTCGCTCACTCCCTTCCCCGCCCTGTTTCCTTCGCCCCTCGCGACGTTCAAGCCGCCGCCGCCAAGGCCGCCCATATGGACCCTAATTTCCTCCACTACTCTCCTAATTCCCCTGTTTCCACTTCCCCCTCCTCCGCCGCCGACGACGACTCCGACGAACTCACCGAAATCGTCAAACTCCCTACTCTCGGCTCCAACTACGATCACTTCATCTCTAACAACGAGTTCGTGCTGATGGACTCGACGGAGGGATGGGTTTATCCCCCGCCTTGGTTACGAACCATGGAGGATTGCGGCTACAATACCAACAATATTATTGACGATTTGGGAATTGGGGTTGGGGATAGTAATTGCTTATGGGATTATTAA 645 52.87 MSTKEESQISQHSSNNNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFAPRDVQAAAAKAAHMDPNFLHYSPNSPVSTSPSSAADDDSDELTEIVKLPTLGSNYDHFISNNEFVLMDSTEGWVYPPPWLRTMEDCGYNTNNIIDDLGIGVGDSNCLWDY 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28476465 28477109 - ClCG11G015160.1 Cla11g01484 285306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01484 214 Pfam AP2 domain 34 83 IPR001471 GO:0003700|GO:0006355
Cla11g01484 214 MobiDBLite consensus disorder prediction 1 35 - -
Cla11g01484 214 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Cla11g01484 214 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Cla11g01484 214 SUPERFAMILY DNA-binding domain 34 92 IPR016177 GO:0003677
Cla11g01484 214 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 197 - -
Cla11g01484 214 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 5 197 - -
Cla11g01484 214 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Cla11g01484 214 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Cla11g01484 214 CDD AP2 35 93 IPR001471 GO:0003700|GO:0006355
Cla11g01484 214 MobiDBLite consensus disorder prediction 1 23 - -
Cla11g01484 214 Gene3D AP2/ERF domain 34 92 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00895 Cla-Chr6:13807124 Cla11g01484 Cla-Chr11:28476465 2.75E-65 dispersed
Cla07g01261 Cla-Chr7:29684996 Cla11g01484 Cla-Chr11:28476465 3.60E-49 dispersed
Cla09g00162 Cla-Chr9:1696022 Cla11g01484 Cla-Chr11:28476465 2.94E-52 dispersed
Cla10g00239 Cla-Chr10:2869126 Cla11g01484 Cla-Chr11:28476465 1.05E-42 dispersed
Cla10g01829 Cla-Chr10:34256760 Cla11g01484 Cla-Chr11:28476465 1.99E-27 dispersed
Cla11g00204 Cla-Chr11:2372697 Cla11g01484 Cla-Chr11:28476465 4.40E-53 dispersed
Cla11g01484 Cla-Chr11:28476465 Cla08g01223 Cla-Chr8:25148826 4.06E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62066 PF00847 AP2 7.90E-14 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01484 K09286 - csv:101217333 275.018