Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01505 ATGTCAATAATGGCAGCAGCCATGGATTTCTACAATGAAGGACCACAAACAGACCACTTCGGTGGTGAACTAATGGAAGCAATTGTACCTTTTATTAAAGTTGCTTCCTCCTCTGCTTCTTCTCTCTCTACAAATTTCCCATCTTCTTCTTCTTCTTCTTCACCAACACCTAATCTCCTCCCTCCTTATTCTTCTTCCTTCAACAGCCACCTCAACTTCTCTCACTCAACCCCTCAACAGTCCAGTTTGTACTCAAATGGCTGCTCCACTTCGATGAACTCAGTATTTTCAGATGGGTTCTCGAACCAAAACCTCATTGGTTTCGAACAGCCATTCACAATTGGACCGCATCAATTATCATCACCTCAAATCCCCCATTCCCAAACTCAATTCAATCTTCTTCAAAACCAAACCCCACTAGCCTTTGCTTGGGGGCAACAAAACCATCAACCACCATCCTGCTATGAACAACAAACGCCCAGCTTCCTCAGCCCCAAGCCTATTCCAATGAAGCAAGTGGGTTCGTCTTCAAAACCCACTAAGCTTTATAGAGGGGTCAGGCAACGGCATTGGGGAAAATGGGTGGCAGAGATCCGACTCCCAAGGAACCGAACTCGGCTCTGGCTTGGTACCTTTGACACTGCTGAAGAAGCTGCCTTGGCATATGACAAGGCAGCCTTCAAGCTCCGAGGGGACTCTGCTAGACTTAATTTCCCCAATCTCAAGCACCAAGGCTCCTGCGTTGAAGGCGAATTCGGCGAGTACAAGCCTCTACATTCCTCAGTAGCTGCAAAGCTCCAAGCAATTTGTGAAAACTTGGCCAAGCCGCAGAAACAAGGCAAGTCAAAGAAGCCTGTTACTGCAGCTAAGAAGTCAAGGTCCCAATCGTGCTCCACGGCCGGGGGAACAGCAGCTGTAAAGGTGGAGAACTCCTCGTCACGGGCTGTCACAGAGAGTGACGGGTCTGCAGCATCTTCACCTTTATCAGATCTTACATTTCCTGACTTCACAGAGTTGCCATGGGATCAGAATCAAGCTTGGGAGAATTCAATGCTAGAGAAATATCCTTCGGAGATTGATTGGGCATCGATCTTACCTTAA 1101 47.5 MSIMAAAMDFYNEGPQTDHFGGELMEAIVPFIKVASSSASSLSTNFPSSSSSSSPTPNLLPPYSSSFNSHLNFSHSTPQQSSLYSNGCSTSMNSVFSDGFSNQNLIGFEQPFTIGPHQLSSPQIPHSQTQFNLLQNQTPLAFAWGQQNHQPPSCYEQQTPSFLSPKPIPMKQVGSSSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAFKLRGDSARLNFPNLKHQGSCVEGEFGEYKPLHSSVAAKLQAICENLAKPQKQGKSKKPVTAAKKSRSQSCSTAGGTAAVKVENSSSRAVTESDGSAASSPLSDLTFPDFTELPWDQNQAWENSMLEKYPSEIDWASILP 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28727353 28729417 + ClCG11G015420.2 Cla11g01505 285327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01505 366 SMART rav1_2 182 245 IPR001471 GO:0003700|GO:0006355
Cla11g01505 366 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 4 364 - -
Cla11g01505 366 CDD AP2 181 241 IPR001471 GO:0003700|GO:0006355
Cla11g01505 366 SUPERFAMILY DNA-binding domain 182 239 IPR016177 GO:0003677
Cla11g01505 366 PRINTS Ethylene responsive element binding protein signature 183 194 IPR001471 GO:0003700|GO:0006355
Cla11g01505 366 PRINTS Ethylene responsive element binding protein signature 205 221 IPR001471 GO:0003700|GO:0006355
Cla11g01505 366 Pfam AP2 domain 183 231 IPR001471 GO:0003700|GO:0006355
Cla11g01505 366 ProSiteProfiles AP2/ERF domain profile. 182 239 IPR001471 GO:0003700|GO:0006355
Cla11g01505 366 Gene3D AP2/ERF domain 182 240 IPR036955 GO:0003700|GO:0006355
Cla11g01505 366 MobiDBLite consensus disorder prediction 276 329 - -
Cla11g01505 366 MobiDBLite consensus disorder prediction 289 329 - -
Cla11g01505 366 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 364 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00191 Cla-Chr1:1926505 Cla11g01505 Cla-Chr11:28727353 3.81E-35 dispersed
Cla01g01849 Cla-Chr1:33368831 Cla11g01505 Cla-Chr11:28727353 4.96E-79 dispersed
Cla02g00113 Cla-Chr2:1307572 Cla11g01505 Cla-Chr11:28727353 3.76E-33 dispersed
Cla02g01716 Cla-Chr2:32061793 Cla11g01505 Cla-Chr11:28727353 2.64E-33 dispersed
Cla06g00758 Cla-Chr6:10087805 Cla11g01505 Cla-Chr11:28727353 2.35E-35 dispersed
Cla11g00574 Cla-Chr11:6486334 Cla11g01505 Cla-Chr11:28727353 2.15E-25 dispersed
Cla11g01505 Cla-Chr11:28727353 Cla10g01062 Cla-Chr10:24646719 2.50E-23 dispersed
Cla11g01505 Cla-Chr11:28727353 Cla08g01096 Cla-Chr8:23739748 5.04E-100 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62067 PF00847 AP2 2.80E-15 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01505 K09286 - csv:101214560 610.912