Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla11g01505 | ATGTCAATAATGGCAGCAGCCATGGATTTCTACAATGAAGGACCACAAACAGACCACTTCGGTGGTGAACTAATGGAAGCAATTGTACCTTTTATTAAAGTTGCTTCCTCCTCTGCTTCTTCTCTCTCTACAAATTTCCCATCTTCTTCTTCTTCTTCTTCACCAACACCTAATCTCCTCCCTCCTTATTCTTCTTCCTTCAACAGCCACCTCAACTTCTCTCACTCAACCCCTCAACAGTCCAGTTTGTACTCAAATGGCTGCTCCACTTCGATGAACTCAGTATTTTCAGATGGGTTCTCGAACCAAAACCTCATTGGTTTCGAACAGCCATTCACAATTGGACCGCATCAATTATCATCACCTCAAATCCCCCATTCCCAAACTCAATTCAATCTTCTTCAAAACCAAACCCCACTAGCCTTTGCTTGGGGGCAACAAAACCATCAACCACCATCCTGCTATGAACAACAAACGCCCAGCTTCCTCAGCCCCAAGCCTATTCCAATGAAGCAAGTGGGTTCGTCTTCAAAACCCACTAAGCTTTATAGAGGGGTCAGGCAACGGCATTGGGGAAAATGGGTGGCAGAGATCCGACTCCCAAGGAACCGAACTCGGCTCTGGCTTGGTACCTTTGACACTGCTGAAGAAGCTGCCTTGGCATATGACAAGGCAGCCTTCAAGCTCCGAGGGGACTCTGCTAGACTTAATTTCCCCAATCTCAAGCACCAAGGCTCCTGCGTTGAAGGCGAATTCGGCGAGTACAAGCCTCTACATTCCTCAGTAGCTGCAAAGCTCCAAGCAATTTGTGAAAACTTGGCCAAGCCGCAGAAACAAGGCAAGTCAAAGAAGCCTGTTACTGCAGCTAAGAAGTCAAGGTCCCAATCGTGCTCCACGGCCGGGGGAACAGCAGCTGTAAAGGTGGAGAACTCCTCGTCACGGGCTGTCACAGAGAGTGACGGGTCTGCAGCATCTTCACCTTTATCAGATCTTACATTTCCTGACTTCACAGAGTTGCCATGGGATCAGAATCAAGCTTGGGAGAATTCAATGCTAGAGAAATATCCTTCGGAGATTGATTGGGCATCGATCTTACCTTAA | 1101 | 47.5 | MSIMAAAMDFYNEGPQTDHFGGELMEAIVPFIKVASSSASSLSTNFPSSSSSSSPTPNLLPPYSSSFNSHLNFSHSTPQQSSLYSNGCSTSMNSVFSDGFSNQNLIGFEQPFTIGPHQLSSPQIPHSQTQFNLLQNQTPLAFAWGQQNHQPPSCYEQQTPSFLSPKPIPMKQVGSSSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAFKLRGDSARLNFPNLKHQGSCVEGEFGEYKPLHSSVAAKLQAICENLAKPQKQGKSKKPVTAAKKSRSQSCSTAGGTAAVKVENSSSRAVTESDGSAASSPLSDLTFPDFTELPWDQNQAWENSMLEKYPSEIDWASILP | 366 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 28727353 | 28729417 | + | ClCG11G015420.2 | Cla11g01505 | 285327 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla11g01505 | 366 | SMART | rav1_2 | 182 | 245 | IPR001471 | GO:0003700|GO:0006355 | |
Cla11g01505 | 366 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 | 4 | 364 | - | - | |
Cla11g01505 | 366 | CDD | AP2 | 181 | 241 | IPR001471 | GO:0003700|GO:0006355 | |
Cla11g01505 | 366 | SUPERFAMILY | DNA-binding domain | 182 | 239 | IPR016177 | GO:0003677 | |
Cla11g01505 | 366 | PRINTS | Ethylene responsive element binding protein signature | 183 | 194 | IPR001471 | GO:0003700|GO:0006355 | |
Cla11g01505 | 366 | PRINTS | Ethylene responsive element binding protein signature | 205 | 221 | IPR001471 | GO:0003700|GO:0006355 | |
Cla11g01505 | 366 | Pfam | AP2 domain | 183 | 231 | IPR001471 | GO:0003700|GO:0006355 | |
Cla11g01505 | 366 | ProSiteProfiles | AP2/ERF domain profile. | 182 | 239 | IPR001471 | GO:0003700|GO:0006355 | |
Cla11g01505 | 366 | Gene3D | AP2/ERF domain | 182 | 240 | IPR036955 | GO:0003700|GO:0006355 | |
Cla11g01505 | 366 | MobiDBLite | consensus disorder prediction | 276 | 329 | - | - | |
Cla11g01505 | 366 | MobiDBLite | consensus disorder prediction | 289 | 329 | - | - | |
Cla11g01505 | 366 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 | 4 | 364 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g00191 | Cla-Chr1:1926505 | Cla11g01505 | Cla-Chr11:28727353 | 3.81E-35 | dispersed | |
Cla01g01849 | Cla-Chr1:33368831 | Cla11g01505 | Cla-Chr11:28727353 | 4.96E-79 | dispersed | |
Cla02g00113 | Cla-Chr2:1307572 | Cla11g01505 | Cla-Chr11:28727353 | 3.76E-33 | dispersed | |
Cla02g01716 | Cla-Chr2:32061793 | Cla11g01505 | Cla-Chr11:28727353 | 2.64E-33 | dispersed | |
Cla06g00758 | Cla-Chr6:10087805 | Cla11g01505 | Cla-Chr11:28727353 | 2.35E-35 | dispersed | |
Cla11g00574 | Cla-Chr11:6486334 | Cla11g01505 | Cla-Chr11:28727353 | 2.15E-25 | dispersed | |
Cla11g01505 | Cla-Chr11:28727353 | Cla10g01062 | Cla-Chr10:24646719 | 2.50E-23 | dispersed | |
Cla11g01505 | Cla-Chr11:28727353 | Cla08g01096 | Cla-Chr8:23739748 | 5.04E-100 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
62067 | PF00847 | AP2 | 2.80E-15 | CL0081 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla11g01505 | K09286 | - | csv:101214560 | 610.912 |