Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01508 ATGAAAGGACACGCTGGCAGTGGGCCCCAGTTTCTTAGGAAAGCTGGACCCCACTTACACATTTATGAACCTAGACGTCATTCAGTCTATGTGAAACTTCTAGACTTTAGAGTGACACGTTTCATTCGCCCACCTCAATCTTCACCTACTAGTATTCTTCACGCCACCGGCTGTTCCAATCATCCGGTGCCCATCGGATTCCTTTTTCTTCATCATCACTATCTTCTTCTGTTGTTAGGGTTTATGGATTTTCGCCACGCCCACTCGGATCTTTCTTTCCGGTTAAGTTCTCATACCACATCTTCCATATCTAGAAGTTCGACTGGGGATAATTCGAGCTATTTGTGCTCCACGGGTTCCAATTCGTCGTATCCATTGGAATTCCGTCAGCAAAAGGATGAGAAATTCGATTTGGTGAAGGGGGTTGAGGATGATGATAGCGAGGACGAGAAGTTTAGCCTCCTAGGGCAACCTTTCCGTGTGAAGAGGCAGAGAGACGCTAATTCGTTTCTCAATCAGGATGCTGCGAAACGGGCCGCGGTAGCGGATGAAACGAGCCCTGAGACGAGACGAGCTTCGGTTAGGGCATGGGGGAATCAGTCGCTTCGAATTGCTGACCCGGAAATTCATAATATTATGGCGAAGGAGAGGCAGAGACAATATAAGGGTATTGAATTAGTTGCTTCGGAAAATTTTGTGTGCAGGGCTGTGATGGAAGCCCTAGGCAGCCATTTGACGAATAAGTATTCTGAGGGAATGCCTGGCGCTAGATACTATACGGGTAATCGATACATAGATGAGATTGAATTACTTTGTTGTGCGAGGGCGTTGGCCGCTTTTGATCTTGATCCTGAGCAATGGGGTGTGAATGTCCAACCTTACTCTTGTACGTCAGCAAATTTTGCCGTGTATACAGGTCTTTTGCTCCCTAAGGATCGAATTATGGGTTTGGATTCAGCATCTGGAGGACATCTTAGTCATGGGTATTATTCTCCGGTTGGGAAAAAGATTTCAGCGACTTCTATATTCTTTGAGAGTCTACCTTATAGAGTGAACCCCTTAACTGGGTATGTTGACTATGATAAGCTTGAGGAAAAGGCGCTCGATTATCGTCCGAAAATACTCATCTGTGGAGGAAGTTCATATCCACGCGAGTGGGACTATGCTAGGTGTAGACAGATCGCGGACAAATGCGGAGCAGTTTTGATGTGTGACATGGCCCATATAAGCGGTCTCGTGGCAGCCAAGGAATGTGCTAGTCCATTTGAATATTGTGATATAGTTACTTCAACAACACACAAAAGTCTCCGAGGGCCCAGAGGAGGCATTATATTTTTCAGGAGGGGTCTAAAATCGAGGAAGCAAGGCGTGCTTCTAACTCATGCAGATGACACTGGTACTGGTGCTTATGATTTTGAGGACAGGATAAACTTTTCCGTTTTCCCGTCGTTACAAGGGGGGCCCCATAATAATCATATTGCTGCCCTGGCCATAGCGTTAAAGCAAGTAGCTTCTCCCGAGTACAGATTATATATTCGACAGGTGAAGAAAAATGCGCAGGCTTTAGCATCAGCTTTATTGAGAAGAAAATGCAGATTGGTAACTAATGGTACTGACAATCATTTGGTGCTGTGGGATCTCACTCCTTTGGGGCTAACAGCCAAAAATTACGAGATGATCTGTGAGGCATGTCATATTACAGTCAACAAGTGTGCCATCTATGGTGACAATGGAGCCATTTCCCCTGGAGGAGTGAGGATAGGCACTCCTGCAATGACTACCAGAGGTTGTCTAGAGGCTGATTTTGAGACGATAGTTGATATTCTTCTTGAAGCAGCTCAGATCACAAAAATAGTCATTCGTAGAGGAAAGCTTGGAAAATTACATAAAGATATCATGATGAATCTACAAAACAACAAAGATATTGTAAACCTTCGGAACCGGGTTGAGGCCTTTGCTGCTTCATTTGCAATGCCAGGATTTGATATATGA 1992 44.93 MKGHAGSGPQFLRKAGPHLHIYEPRRHSVYVKLLDFRVTRFIRPPQSSPTSILHATGCSNHPVPIGFLFLHHHYLLLLLGFMDFRHAHSDLSFRLSSHTTSSISRSSTGDNSSYLCSTGSNSSYPLEFRQQKDEKFDLVKGVEDDDSEDEKFSLLGQPFRVKRQRDANSFLNQDAAKRAAVADETSPETRRASVRAWGNQSLRIADPEIHNIMAKERQRQYKGIELVASENFVCRAVMEALGSHLTNKYSEGMPGARYYTGNRYIDEIELLCCARALAAFDLDPEQWGVNVQPYSCTSANFAVYTGLLLPKDRIMGLDSASGGHLSHGYYSPVGKKISATSIFFESLPYRVNPLTGYVDYDKLEEKALDYRPKILICGGSSYPREWDYARCRQIADKCGAVLMCDMAHISGLVAAKECASPFEYCDIVTSTTHKSLRGPRGGIIFFRRGLKSRKQGVLLTHADDTGTGAYDFEDRINFSVFPSLQGGPHNNHIAALAIALKQVASPEYRLYIRQVKKNAQALASALLRRKCRLVTNGTDNHLVLWDLTPLGLTAKNYEMICEACHITVNKCAIYGDNGAISPGGVRIGTPAMTTRGCLEADFETIVDILLEAAQITKIVIRRGKLGKLHKDIMMNLQNNKDIVNLRNRVEAFAASFAMPGFDI 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28741829 28745537 - ClCG11G015450.2 Cla11g01508 285330

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01508 663 SUPERFAMILY PLP-dependent transferases 190 662 IPR015424 -
Cla11g01508 663 Gene3D Aspartate Aminotransferase, domain 1 206 659 IPR015422 GO:0003824
Cla11g01508 663 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 7 163 663 - -
Cla11g01508 663 CDD SHMT 206 617 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Cla11g01508 663 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 163 663 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Cla11g01508 663 Pfam Serine hydroxymethyltransferase 204 608 IPR039429 -
Cla11g01508 663 Gene3D - 231 513 IPR015421 GO:0003824
Cla11g01508 663 Hamap Serine hydroxymethyltransferase [glyA]. 201 660 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Cla11g01508 663 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 426 442 IPR019798 GO:0030170
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01508 K00600 glyA, SHMT; glycine hydroxymethyltransferase [EC:2.1.2.1] - csv:101215287 1069.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01028 Cla-Chr5:10512019 Cla11g01508 Cla-Chr11:28741829 0 dispersed
Cla06g00772 Cla-Chr6:10348398 Cla11g01508 Cla-Chr11:28741829 0 dispersed
Cla07g01032 Cla-Chr7:26774718 Cla11g01508 Cla-Chr11:28741829 3.49E-168 dispersed
Cla11g01508 Cla-Chr11:28741829 Cla08g01180 Cla-Chr8:24681996 9.92E-172 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g340 . Blo12g00691 . Bda03g00512 Bpe02g00085 Bpe04g00468 . Bma01g02633 . . Cma01g01411 . . . . . . . . . . . . . . . . . . . . Cone4ag1365 Cone7ag1566 . . Lsi04g02356 Csa04g01838 . . . . Bda11g00752 Bda13g01409 . . . . Sed12g1436 Cmo01g01461 . . . . . . Cpe02g00532 Bhi09g02629 Tan01g3975 Cmetu07g0508 . Hepe01g2251 Mch11g0798 . Cla11g01508 Cam11g1567 Cec11g1596 Cco11g1594 Clacu11g1723 Cmu11g1543 Cre11g1958 . . Chy07g00694 Cme07g00907
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000166 7 6 6 5 4 5 6 5 6 7 6 6 9 6 5 10 6 8 7 6 5 5 6 5 5 6 5 19 9 4 195
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01508 Cla_Chr11 FPKM 8.88488 8.243861 6.18185 10.188661 11.500127 7.528681 11.632457 7.640588 7.206069 7.969234