Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01527 ATGACGATGGCAATGTCAGAATTGCTTCTGCAAACCCAGAAAGCCATTCCTTTCTCAACTCCCTCTCCCATCGTTTTCCCATATATAAAATCTTCTCATATTCGGATTCCCTTTCCCAAATCATTTCCAACTAACAAAACTAATCACCAACTTCCACCATTCCCAAACATTCATCTACCCATGTCTTTTACCCCACCTCAACACACTACCAACAACCCCCATACCACAACCTTCCAGCTATACTGGTGCCACCAATGCCACCGGACCGTCACCCTCGCCTCTGCACACCCGTCGGAGCTCACCTGCCCACGCTGTTACGGGCAGTTCATTGAAGAGGTCCACCTCACCCTCCCTGAATTTGATCCCTCGCCAGAGGCTCGTTTACTTGAAGCCTTATCACTAATGCTCAACCAGCCAATTCGTCTCTTCAATAACAGAAACCCAGACCCAAACCGTCGTCGTCCACCATTGCACAGGTTCGACGATTTCGACCGAAGATCATTTAGCGATCCCGAAGGAGACGAATTTCCTCGCTGGCGAACACGATGGCGCAATCGAAGCCTGGATGAGATGGACAATTCTGGCCAACCACCACCAAATCCAAACCGGTCTCGAACTGTCATCGTTTTCGGTCCCCCTGACCAACTTCAGCAAATTCAATCAATATTACCACGAAGAGCCAATCCAAGAGACTACTTCACTGGACCACAACTCGATGAACTAATTGAAGAGCTAACACAGAATGACCGACCGGGGCTGCCACCAGCAAGTGAGGAGACAATTGAGAGGATTCCAATGGTGAAAATAACAGCAGAGCATCTGAAGAACGACTCGCACTGCCCAGTATGCAAGGAGGAGTTCGATGTGGGGGGAGAAGCAAGGGAATTGAGTTGCAAGCATATATACCATTCGGAGTGCATAGTGCCATGGCTTCGGCTTCATAACTCTTGCCCAGTTTGTAGGCAAGAGATGCCACCATTGACGCCGGAGAATGGAGCGTCAGGAAGTTCTGAAGATGAAGACGGGTTTGGGAGAAGATGTGCCAGATGGTGGAGTCAGTTGGTTTCTTGGCCATTTCGGAATAGGTATAGGCAGATTAGTCCAATTCCACGGAACCGCTTCAATGCTTCTTCTCGAGAAATTAATTCAAGGGGTGGTTAA 1161 48.84 MTMAMSELLLQTQKAIPFSTPSPIVFPYIKSSHIRIPFPKSFPTNKTNHQLPPFPNIHLPMSFTPPQHTTNNPHTTTFQLYWCHQCHRTVTLASAHPSELTCPRCYGQFIEEVHLTLPEFDPSPEARLLEALSLMLNQPIRLFNNRNPDPNRRRPPLHRFDDFDRRSFSDPEGDEFPRWRTRWRNRSLDEMDNSGQPPPNPNRSRTVIVFGPPDQLQQIQSILPRRANPRDYFTGPQLDELIEELTQNDRPGLPPASEETIERIPMVKITAEHLKNDSHCPVCKEEFDVGGEARELSCKHIYHSECIVPWLRLHNSCPVCRQEMPPLTPENGASGSSEDEDGFGRRCARWWSQLVSWPFRNRYRQISPIPRNRFNASSREINSRGG 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28904384 28906648 + ClCG11G015630.2 Cla11g01527 285349

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01527 386 SUPERFAMILY RING/U-box 260 328 - -
Cla11g01527 386 MobiDBLite consensus disorder prediction 147 176 - -
Cla11g01527 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 74 357 - -
Cla11g01527 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 327 IPR013083 -
Cla11g01527 386 SMART ring_2 280 320 IPR001841 -
Cla11g01527 386 PANTHER - 74 357 - -
Cla11g01527 386 Pfam zinc-ribbon 79 112 IPR039525 GO:0061630
Cla11g01527 386 Pfam Ring finger domain 279 321 IPR001841 -
Cla11g01527 386 ProSiteProfiles Zinc finger RING-type profile. 280 321 IPR001841 -
Cla11g01527 386 MobiDBLite consensus disorder prediction 142 176 - -
Cla11g01527 386 CDD RING-H2_RNF126_like 280 321 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01527 K11982 RNF115_126; E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27] - csv:101215288 562.377
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02368 Cla-Chr2:38732677 Cla11g01527 Cla-Chr11:28904384 1.76E-32 dispersed
Cla04g00607 Cla-Chr4:20234330 Cla11g01527 Cla-Chr11:28904384 2.95E-48 dispersed
Cla05g01048 Cla-Chr5:10776731 Cla11g01527 Cla-Chr11:28904384 5.62E-30 dispersed
Cla10g00873 Cla-Chr10:19995890 Cla11g01527 Cla-Chr11:28904384 3.38E-08 dispersed
Cla11g01527 Cla-Chr11:28904384 Cla01g01465 Cla-Chr1:29194182 1.55E-32 dispersed
Cla11g01527 Cla-Chr11:28904384 Cla10g01524 Cla-Chr10:30533282 1.61E-45 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g291 . Blo12g00673 . Bda03g00531 . Bpe04g00485 . . . . . Cma09g00804 . . . Cpe06g00639 . . . . . . . . . . . . . . . Cone4ag1390 . . . Lsi04g02380 Csa04g01892 . . . . . . . . . . . . Cmo09g00797 . . . Car09g00720 . . Bhi09g02658 . . . Hepe01g2273 Mch11g0820 . Cla11g01527 . . . . . . . . Chy07g00659 Cme07g00866
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007071 1 5 1 0 1 0 2 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 1 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01527 Cla_Chr11 FPKM 0.0 0.0 2.076927 1.080893 0.0 0.0 0.0 0.0 0.0 0.0