Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01532 ATGCGATCATTCACAATTGGGCGTAGATTCATGGAGCCTCCGGCTGAGCAATCGGGGAATGCGACGGAAGTTGGCGCCACTGAGATCGGCAAACGGGAGCTCAGAAGTGTTCGCCGTAAACTGGTACAGTCTACGCTGCTTCCTCACAAGCCTCAAGAACAGGAGGAGAATGGAGTCGATCAAGAGGAGGAGAATAATTGCGGCGAGGAGGCGGAATTATGTGGGAGTCAGGGCAAGAAGAAAAGGAAGTCGCAGGCGAAGGAAAAGCGAGCAGTAAACTTGACGCCAAAGAAAATTTTGCATTTTGAAGAGGCAACTCCCACAATTCCCGACTTGCGTCTGGAGGCAAAAATGACTAGAGAGGAAAATTCACGGATGTTTGCAGGAAGGCAAATACATCCCTTCTTTTCATCCCTAAAAGCAGGGAAGAAAAGTCAAGAGGCAACTCAATCGGCAGAGAGAGGGTGTACTGTTGAGAAAAAGGAAAGTAGAATGGACTGTAATCCCATCCACGTCTATGAAGAAACTGGGGATGATGAACCATCTCCAGACTGGAAAAACTGGACTTTCACTGACAGAAATATTATACATAATGGCCATATATTACAAAAAGCTTGTTCATCAGTATTTGAAGGCTCTGTTAAGTCTTTAAGTTTAGATGACCTTCCCATTGTGTTGCCACCCTCGGATTCTACTCCTGGTACAAACAAGGACCCCATGGATCATGATTCCATCGAGCAAGAATGCACTAAAGAGTTAACGTCAACTGTATACAATGTGGATGCTGAAAAGGAAATAATGCTCCATCACCTCCTAAGTAGTGCAGAAATGGATGATAACTTGAATAATACACGTGGGCTTAGTGATTCTGAAGCAAGGCCAATTCTTGAGCATCAAAGTAGATTTCTTCAGGACAGAATGCAGTCCTACTACCTTCGTTGTCAAAGCTGTACCAAAAATTGTTTATGGACATACAAATATCAGCCGAAGATGGCTATGGAGGTATGTGGTAATCTCGAATCAGTAAAGTTCTTGAGTGAGTGGCTACACCTCTGGTATGAAAGAAATTCACAGAACAACAAAGATTTTGGTGGAGGGAATAAATTCCAGAAGCAAGATAACAATGGTTACTGTTCTCGGAGTGATTCTGACTATGAAAGTCCGGATGGAGAGGATAGCCTGACGAATGTTCTCCTTGTCACGGGATCATCTGGGGTATGCAGAAGCTCACTTTTATCACCTGATCATTTACATTTTTTTCTGGATTTTGTAATTTTCGTTGAATCAGCGGAAGTAATTTTTAGAAGATCCCATTGCTATTCTCCATCTAAACTGTGCAATAGTGGGAAATCTGCGGCCATTTATGCTTGTGCTGAAGAGCATGGTTTCAGGGTTTTTGAGTTCAGTGCATCTGTCATTCGATCAGGAGCTGTTCTCAAGCAGATGATTGGAGAGGCTTTACAATCTCATCAGCTAAAATGGTCTGTACTATTTAAATTTTGGCTTAGATTCCTCCATGTTATAATTTCTTTCTTAAACTTTATGATATTACTCGTTCTGCATGATTTTGGTTACTACTTAAAAAAAAATCCAATGTCAGTAAAAAATTCCCAGGGATCAAGGAACAATTTTATTGAGAAATCCTCCTCTCTTCAAGAGAGTACAGCAGCCAAATGTTTAGCGAGTGAGTTGATTGAACTCATCCCTTTGTCAGACGACGATTCTAAAGATTACATTAAAGGTGTTGGAGAATTTGAAGACATCGGATCTGGAAGCCTCAGCAACCAAGGTGAAGCCAAGCCTTTAATTCTTTTAGAGGACGTGGATATCATTTTTCTTGAGGATCGAGGTTTTATTTCTGCAATTCAAGAGATTGCTGACACAGGAAAGGGACCCATAATTTTGACCAGCAATAGTAGCGATCCTGTTCTCCCTGATAATTTGAATAGGCTACAGGCCTCTTTTACACGACCATCATCAATGGAACTACTCAGCCATTTGTATAAGATTTGTGCTTCTGAAGGAGTCAGCATCCAACCATACTTACTTGAGCGCATTATTCATTATTGCCACAGAGATATACGGAAAACCATTATGCATCTTCAGTTCTGGTGCCAGGATAAAATTCAGAAAAAGTATGGTTCACTTTTATTTGATATTGATGCTGGCCATCAGATACTGCCGGTGATAATGCCGTGGAGTTTCCCATCTCAGTTATCAGAGGTAGTTGACAAAGAGATAACAAAGTCGTTATTAGAAATGGAAACAACTTGCTTGCTGGAGGCAAGTGAAGGTGAATTTAAAAAAGAGGAAATGCAGAATGGTCTGGACTACCAAAATTATGAAGACAACTATCTTTTAGACGCCAAGAAGGCAGCAATGATGAGTAGGAATGGCTCGATTCAAGATCACAATGAATTTGCAGCTGAGTTTGATGCTGCACATGAGTGTTCTGATGTTTCAGGAACCCCTATTCCTTTATCTGGGAAGAAGCACCGAAGAAGGCTGGATATGGTAGTGTCTTCTGATTCTGAAGATGTTCCCATCACCAAGGAATGTTCTTTAGTACCAAATAAAGATGACGGTATATTATCATCTCACCATCAAATATCTCCAAATTACTCAAGCCCATTAAACGGGCTGCTTTATCATATGGTAGATAATACTGTTGAAGATTATTATCCAACTTCAGAAACTGCAGGAGGTATGCATGTGAATGAGATGTCCATGTCTCTCACTACCTCATATGTACCAGAATCAATTTTTGTTCCTGAGACTGAAATTCATGATATGGAGTTGTTTCCCAAAATGTTATCCCATGGTGACGGTGCCAGTCCAGAAGTTTCTATGGACGAGCTTTTTCAGAATGTGTTAGCAGTTGAACCCAATAGTTTTTGTTCACCTACACATACTGTACAAGAAACCACAGCTGTTTTGGAAGATACTTGCAACGTATTTAATTTTTCTCGTCTAGAGGGGGAAGGATTTTCTTGTCATGGACATATAGAAAACATTATCAGAGGGTATCCTGTGATGGATGAGTGCAGCCGTGTAGACTTTAACGAGTCCAAGTTTGTAGAGAAACCTGAATTGAGTGTGCCGGGTGATTCAGTGCATGAATTGTGGAAACAACTTCGCCTCGGTCGATTAGATTTTCTAGGACATCATGTCCCACTCCCACCAGAAAAGAAAGAAACCTGTCAGATCGTCAAACTAGTTCATGGAATGAGCCATCTAATATCAGATTCGGACCTGCTTTCTTCCTGCCGACCACAAGATATGTTGGAGACGCCAACACTTATGTCTGAGGAATCAGACTCATTTGACTGGGGAGGTGAGCAACTGCAGATGGCATCTACAATTGCTCAGCATGGATTTAGCCTGATTGCTAATGATATTAGTACCATGGGTTCTCAAGTTGGCTTTGGTAGCAATGTGGATATCGTATCAGAAATGCTTGCCTCTGCAACTAATACAGCAGCATTGGGTAAATTGTTGAGGCATAATATGATGGAAAGCTCCTCTTCCACTAAGAAGATTTTGAATCTGGGCCTTCCAGGAAATAGTCATATGCAAGAGAGAGGACGAGTTGCACGACATTACTTGAGTACCGGTTCTCATCTGTTCTCCCCTGAAGATATAACATTGCTGGGACAATCTAAGCTTCCATATAAAGATATTCAAGGATGTTAA 3693 41.29 MRSFTIGRRFMEPPAEQSGNATEVGATEIGKRELRSVRRKLVQSTLLPHKPQEQEENGVDQEEENNCGEEAELCGSQGKKKRKSQAKEKRAVNLTPKKILHFEEATPTIPDLRLEAKMTREENSRMFAGRQIHPFFSSLKAGKKSQEATQSAERGCTVEKKESRMDCNPIHVYEETGDDEPSPDWKNWTFTDRNIIHNGHILQKACSSVFEGSVKSLSLDDLPIVLPPSDSTPGTNKDPMDHDSIEQECTKELTSTVYNVDAEKEIMLHHLLSSAEMDDNLNNTRGLSDSEARPILEHQSRFLQDRMQSYYLRCQSCTKNCLWTYKYQPKMAMEVCGNLESVKFLSEWLHLWYERNSQNNKDFGGGNKFQKQDNNGYCSRSDSDYESPDGEDSLTNVLLVTGSSGVCRSSLLSPDHLHFFLDFVIFVESAEVIFRRSHCYSPSKLCNSGKSAAIYACAEEHGFRVFEFSASVIRSGAVLKQMIGEALQSHQLKWSVLFKFWLRFLHVIISFLNFMILLVLHDFGYYLKKNPMSVKNSQGSRNNFIEKSSSLQESTAAKCLASELIELIPLSDDDSKDYIKGVGEFEDIGSGSLSNQGEAKPLILLEDVDIIFLEDRGFISAIQEIADTGKGPIILTSNSSDPVLPDNLNRLQASFTRPSSMELLSHLYKICASEGVSIQPYLLERIIHYCHRDIRKTIMHLQFWCQDKIQKKYGSLLFDIDAGHQILPVIMPWSFPSQLSEVVDKEITKSLLEMETTCLLEASEGEFKKEEMQNGLDYQNYEDNYLLDAKKAAMMSRNGSIQDHNEFAAEFDAAHECSDVSGTPIPLSGKKHRRRLDMVVSSDSEDVPITKECSLVPNKDDGILSSHHQISPNYSSPLNGLLYHMVDNTVEDYYPTSETAGGMHVNEMSMSLTTSYVPESIFVPETEIHDMELFPKMLSHGDGASPEVSMDELFQNVLAVEPNSFCSPTHTVQETTAVLEDTCNVFNFSRLEGEGFSCHGHIENIIRGYPVMDECSRVDFNESKFVEKPELSVPGDSVHELWKQLRLGRLDFLGHHVPLPPEKKETCQIVKLVHGMSHLISDSDLLSSCRPQDMLETPTLMSEESDSFDWGGEQLQMASTIAQHGFSLIANDISTMGSQVGFGSNVDIVSEMLASATNTAALGKLLRHNMMESSSSTKKILNLGLPGNSHMQERGRVARHYLSTGSHLFSPEDITLLGQSKLPYKDIQGC 1230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28957980 28967742 + ClCG11G015680.2 Cla11g01532 285354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01532 1230 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 1189 1226 IPR004582 GO:0006281
Cla11g01532 1230 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 21 89 IPR004582 GO:0006281
Cla11g01532 1230 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 85 408 IPR004582 GO:0006281
Cla11g01532 1230 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 448 1190 IPR004582 GO:0006281
Cla11g01532 1230 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 448 710 IPR027417 -
Cla11g01532 1230 MobiDBLite consensus disorder prediction 363 390 - -
Cla11g01532 1230 Gene3D - 658 717 - -
Cla11g01532 1230 Gene3D - 548 656 IPR027417 -
Cla11g01532 1230 Gene3D - 320 501 IPR027417 -
Cla11g01532 1230 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 21 89 - -
Cla11g01532 1230 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 85 408 - -
Cla11g01532 1230 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1189 1226 - -
Cla11g01532 1230 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 448 1190 - -
Cla11g01532 1230 MobiDBLite consensus disorder prediction 363 382 - -
Cla11g01532 1230 MobiDBLite consensus disorder prediction 1 92 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01532 - - - bhj:120086264 1904.41
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g277 . Blo12g00671 . Bda03g00534 . Bpe04g00488 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g01807 . . . . . . . . . . . . . . . . . . . Bhi09g02667 . . . Hepe01g2278 Mch11g0825 . Cla11g01532 Cam11g1591 Cec11g1620 Cco11g1621 Clacu11g1750 Cmu11g1566 Cre11g1982 . . Chy07g00650 Cme07g00858
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005441 1 2 1 1 1 0 1 1 0 3 1 1 1 1 1 1 1 3 1 1 1 1 1 1 2 1 1 2 2 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01532 Cla_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.70512 1.12626 0.386382