Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01536 ATGAAAATTAACCCACGGGGTCGAGGACGGGGCGGGGATACCCTCTCCGTCCTTGCCCTGTCCCCGGAAGGCCTTGCTCCGCTACTCGCCTTCTCCAGCCTTTATTTCCCGAATCACCGGTTTTGCTATAACTTCATCAAAGAAGAAGAAAACCTAGAAAAGATTACCGGAGCGTCGGGACCAGGATCGGATTCGGAAGCTATTTTGGTTGTTAATCCAATGGCGTCTACTTTCAGCGGCGATGAAACTGCTCCTTTCTTCGGCTTCCTCGGGGCTGCTGCAGCTCTTGTTTTCTCATGCATGGGTGCTGCTTATGGGACTGCTAAGAGTGGAGTTGGAGTGGCTTCCATGGGAGTCATGCGACCAGAGCTTGTCATGAAATCTATAGTTCCTGTTGTTATGGCTGGAGTGTTGGGTATCTATGGGTTGATCATCGCTGTTATTATCAGTACCGGAATAAACCCAAAAGCTAAGTCTTACTATTTGTTTGATGGGTATGCACACCTGTCTTCTGGGCTTGCTTGTGGACTTGCTGGTCTCTCTGCTGGAATGGCAATTGGGATTGTTGGTGATGCTGGTGTTCGGGCCAACGCACAACAACCTAAGCTCTTTGTTGGAATGATTCTCATCCTCATCTTTGCTGAGGCTCTTGCCCTCTACGGTCTCATTGTTGGTATCATTCTTTCATCTCGGGCAGGCCAATCTCGTGCAGATTAA 717 49.23 MKINPRGRGRGGDTLSVLALSPEGLAPLLAFSSLYFPNHRFCYNFIKEEENLEKITGASGPGSDSEAILVVNPMASTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29002462 29007818 - ClCG11G015730.2 Cla11g01536 285358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01536 238 Gene3D - 84 235 IPR035921 -
Cla11g01536 238 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 76 238 - -
Cla11g01536 238 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 76 238 - -
Cla11g01536 238 PRINTS Vacuolar ATP synthase 16kDa subunit signature 103 127 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cla11g01536 238 PRINTS Vacuolar ATP synthase 16kDa subunit signature 180 206 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cla11g01536 238 PRINTS Vacuolar ATP synthase 16kDa subunit signature 207 230 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cla11g01536 238 PRINTS Vacuolar ATP synthase 16kDa subunit signature 129 153 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cla11g01536 238 Pfam ATP synthase subunit C 170 228 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cla11g01536 238 Pfam ATP synthase subunit C 90 149 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cla11g01536 238 SUPERFAMILY F1F0 ATP synthase subunit C 160 229 IPR035921 -
Cla11g01536 238 CDD ATP-synt_Vo_c_ATP6C_rpt1 86 153 - -
Cla11g01536 238 CDD ATP-synt_Vo_c_ATP6C_rpt2 162 229 - -
Cla11g01536 238 SUPERFAMILY F1F0 ATP synthase subunit C 87 150 IPR035921 -
Cla11g01536 238 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 86 194 IPR011555 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01759 Cla-Chr5:29416695 Cla11g01536 Cla-Chr11:29002462 9.90E-14 dispersed
Cla08g01441 Cla-Chr8:27277191 Cla11g01536 Cla-Chr11:29002462 1.45E-88 dispersed
Cla11g01536 Cla-Chr11:29002462 Cla08g01299 Cla-Chr8:25908834 2.93E-21 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01536 K02155 - csin:114302022 288.885