Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01541 ATGGACGGCTATTACGCATTCTCATCGATCTCAACGATTTTTTCTGGATCTGGAGTTGTTGATGTTGCTCATGATGCTTCTCCCTGTTTTTCATCTCCATCGGTTTGGAATCGGATGGATATGGCGGCCATGATTAGGAGGGGTATGCTGGTGTTCTGTGGTGGTATTGGCCTAGGAGAGCGGAAGGAGTTAATCAAAGCCGCGTCTCGTCATCGTTATGCTCTTGCTGCAGCTCATGTTACGTATTTTCAGTCTCTCAAAGACATTGGTGAAGCTATACGCAAATTTGTTGATGAAGAGATTGTGATCTCTGGTGCTGAATCATCATCCTCTCATGGCTCTCCTGTTCTTACACTGCCTTCCGATGAAGGGAAAGGGAACGGGAAGAAACCGAAATCGGGTCATATTCATATCGAGGATAGCCCATTACATGATGAAGGTTATAGCCATCCTCCTTATGCTTTTCCGCCAAGGGATATCCCAGTACAAGATGAAGATTATAGCCATCCTCCTTATGCTTATCCGCCCAGAGATTTCCCAGTACAAGATGAAGGATATAGCCATCCTCATGGTTATCCGCCAAGGGATATCCCAGTACCAGTTGAAGGTTATAGCCATCCTCCTTATGCTTATCCGCCTAGGGAAATCCCAGTACAAGTTCAAGGTTATAGCCATCCACCTCCTCATGCTTATCCCCCAAGGGATTGGAGTTCTTCAACAAATACATACACCTATTATATGCAGAAGTCAACCGCTCCGGCGACAACTGTAATGTATGATGCGCCGGAAACACATACAGCTTCAGATGGGCAGTGGCCTGGTCCATCGTACAGTTATCCGCCCTATCCACAGTATGGAAACAGTGGGTTCTATGGGTTTTCAATGGGTTCACCACCGGATTATTATAACATGACCAATCAGCAGCCAAAGCGCCCTGCTACTCCACCGCCCCCGCCTTCTCCACCGAAGGTCTCTGCTTGGGATTTTATGAATGTTTTTGATGGCTATGATAATGGTTACCAGGATTATAATTCGGCAAATAGATATGCGTATGGCTCCATTCAGAGCAGTCCTGATTCCAATGAAGTGAGGGAGAGAGAAGGGATACCTGAATTGGAAGATGAAACAGAGCCTGAAGCTCTGAAAGAAATTAAAGAGAGGAAGAAATTGAAGGTGGAGGCGATGAACAAGAATCTGAATTCAGGGGAGGGAACTTCAAAGTCTGTACCACCACAGAGTAGTGAGGAAAGCTCAAAATCTCTGCCAGTGCCAAATACTGGTAGCTCATCGGTATCTAAGGATAAGGGCGTAAATAACAGCCCCGATACAGTCGTGTCGAAGAAATCGGAACAGGAGGAGCCAGTGGAGAAGAAAGAGGTGAGTTTCGAGATTGAGGAGAATTCGACATTGGATATTGAATCTTCCAAGAAAAGTAATTTAGCCACATTTGCGGCCTTTGGTACAAGGGATCTCCAGGAAGTTGTGAGTGAAATTAAGGATGAATTTGAAGCTGCTTCTAGCTATGGGAAAGAGGTTGCCATGTTGCTTGAAGTGGGGAGATTGCCTTATCGGTCTAAGATCACTGTACTTAAAGTTATTCTTTCTCGGATCCAGTACTTGGTGTCCCCTTCCACAGCATCTGCTCAGCCGCCATTGGTTTGGTTGGACCCTAAGACAGTGAAAATGGCCAAAGCCTACTCTGGGTCTAGCAGTCCTGGCGATGAGTTTGACTTGAAATCTAGAAGCCTTTCATCTACGCTGGAGAGGCTTTATGTATGGGAGAAGAAACTGTATAAAGAAGTTAAGGATGAAGAAAAGTTACGTGTTATTTATGAGAAATTGTGCAAAAAGTTGAAAAGGTTAGATGAACATGGGGCTGATTCCACTAAAATCGATGCTACTCATGCCTCTATTAGAAAATTGTCAACCAAGATCGACGTCTGTATCAAAGCCGCTGATGCTATATCAAGCAGGATCCATAAGTTGCGGGATGAAGAATTGCAGCCCCGATTAACTGAACTTATTCATGGGTGGATAAGAATGTGGAGTTCCATTCTCAAATGTCACCAGAAGCAATTTCAAGCAGTTATGCAGAGTAAAATTCGCTCATTAAAAGCTAGAACTGGCTCTAGAAGAGATGAAAGTTTGAAAGCTACTGTCGATCTCGAAATGGAACTCGTCAATTGGTGCACCAGATTTAACAATTGGATTCGCACCCAAAAAGCTTATGTCGAATCTTTAAATGGATGGCTCCTACGATGCCTGAACAATGAGCCTGAAGAAACGGCTGATGGGGTTGCTCCTTTTTCACCAAGTCGGATGGGCGCTCCGCCAATTTTCATTATTTGCAACGATTGGCACCAAGCTATGCTTGAAATTTCAGAAGATAAAGTGGTTGGTGCCATTCATGGTTTTGCTTTAAACTTGCATGAGTTATGGGAAAGGCAAGATGAGGAACAACGTCAGAGAATCAAAGCCAATTTCCTTTACAAGGATTTTGAAGAACACCTTAGAACCTTGAAAATGGAGAGAGCAATGATAAAATCTGACCAAGATGATGCAGCAGGAGGAACTGCACTGTCAAAAGTTCCTTCTGAAAATGGAATTTCACCGCCGGATGATCTGAAAGCTAATTTAGATTCATTGAGGAAGAAGTTATATGATGAAAGAGCAAAACACAAGGATGCCATTAAACTGGTTCACAACGCTGCTTCAAGTAGCATACAAGCAGGTTTGGTTCCAATTTTTGAGGCTTTGGAAAAATTCAGTTCCGAAGTCATGAAAGCTCATGAGCAACAGGTTGCTTGTGATCGGGAGATACTCTACAACATACCGGCACTTGCAAATCCCGTCTCCGGAACGTCCGATTCCCAGGAGTTCGTCGTCGAGTTGGATCATTCTAACTTCACCGACTTCGTAAGCAAGCTCGATTTCCTTATCGTCTCCTTCTACACTCTGGGTTGTGGACACTGTAAGAAGTTGGCACCGGAGTATGAAAAAGCTGCTAATATCCTGAGTAAGCATAATCCTCCTCTGGCTCTAGCAAAAGTTAACATTGCAAATGAAGCAAACGAGGGACTTGCTGGATCCGATGGCTCCATTTCTATTAAGATTGTGAGAGAGGGGGGTAAGAATGTTCAAGAATACAAGGGTCCTTATGATGCAGATGGTATTGTTAAATATGTAAAGAGACAGTATGGACCTGCCTCTGTTGAAATAAGAACTCTGGAGGATGCCCAAATTTTCTTATCTGACAATAAGATTGCTATTGTTGGCATATTCCCTCAATTTTCTGGGGGGAAGTTTGAAAACTATACTATCCTAGCCAAGAAATTGCGTCCTACTGAGGAATTTTTTCATACTTCAGATGCCAAACTTCTTCCTCGTGGTGAATCATCTGTCACTGGTCCCTTAATGAGGGTATTCAAGCCATTCGATGAGCTCTATGTTGATACTCAGGATTTTGACGTGAATGCTCTCGAGAAATTTGTTGAAAAATCAATCGTACCTACTGTAACTATCATGGATGGCGACCAGAAAAATCAACGTCTAGTTGACAATTTCATGTATAATTCAAATTCAAAGGTCATGTTGTTTATAAATTTTAACAGTGAGATTGCTGCTTCATTTAAGTACAAGTATCGTGAACTTGCGGAGCTATACAAAGGAGATAGCCTCAGTTTTCTGATGGCAGATATTCATGTTAGTTCTCATTCGATTAAGCAATATGGAATTAAGGATGATCAAATACCTTTTATTATCCTACTAAGTGATAAAACAAAGTATCTGAAATCCAATGTGGAGCCTGGTGAGCTTTCTCCTTGGTTGAAAAAATATAAGAATGGAGAATTGGAACCATACATAAAATCTGAACCTATACCAGAGCATAATGACGAACCTGTGAAAGTGGTGGTAGCTCACACATTTCAGGACGTAGTTTTCAACTCAAGGAAGAATGTTCTGCTTGAGTTTTATGCTCCTTCACATAAAGACTGCAAAGAGCTGGCTTCAGTCTTTGAGGATCTTGCCATCTCATACCAAAGAGATCCTGATGTTATAATTGCTAAATTCGATATTTTTGCAAATGACTTACTACATGACTTCGAAATCTGGACACTCCCTACTGTTTACTTCAAATCGGCCGATGGGAACATATCGCCATACACCGGCTCTAAAGATGATGGGGACACAACTCTTATTAGTACCCTCCACCGATGCTTCTCCCGGAATGTCGACCACCGACTCTGA 4248 42.7 MDGYYAFSSISTIFSGSGVVDVAHDASPCFSSPSVWNRMDMAAMIRRGMLVFCGGIGLGERKELIKAASRHRYALAAAHVTYFQSLKDIGEAIRKFVDEEIVISGAESSSSHGSPVLTLPSDEGKGNGKKPKSGHIHIEDSPLHDEGYSHPPYAFPPRDIPVQDEDYSHPPYAYPPRDFPVQDEGYSHPHGYPPRDIPVPVEGYSHPPYAYPPREIPVQVQGYSHPPPHAYPPRDWSSSTNTYTYYMQKSTAPATTVMYDAPETHTASDGQWPGPSYSYPPYPQYGNSGFYGFSMGSPPDYYNMTNQQPKRPATPPPPPSPPKVSAWDFMNVFDGYDNGYQDYNSANRYAYGSIQSSPDSNEVREREGIPELEDETEPEALKEIKERKKLKVEAMNKNLNSGEGTSKSVPPQSSEESSKSLPVPNTGSSSVSKDKGVNNSPDTVVSKKSEQEEPVEKKEVSFEIEENSTLDIESSKKSNLATFAAFGTRDLQEVVSEIKDEFEAASSYGKEVAMLLEVGRLPYRSKITVLKVILSRIQYLVSPSTASAQPPLVWLDPKTVKMAKAYSGSSSPGDEFDLKSRSLSSTLERLYVWEKKLYKEVKDEEKLRVIYEKLCKKLKRLDEHGADSTKIDATHASIRKLSTKIDVCIKAADAISSRIHKLRDEELQPRLTELIHGWIRMWSSILKCHQKQFQAVMQSKIRSLKARTGSRRDESLKATVDLEMELVNWCTRFNNWIRTQKAYVESLNGWLLRCLNNEPEETADGVAPFSPSRMGAPPIFIICNDWHQAMLEISEDKVVGAIHGFALNLHELWERQDEEQRQRIKANFLYKDFEEHLRTLKMERAMIKSDQDDAAGGTALSKVPSENGISPPDDLKANLDSLRKKLYDERAKHKDAIKLVHNAASSSIQAGLVPIFEALEKFSSEVMKAHEQQVACDREILYNIPALANPVSGTSDSQEFVVELDHSNFTDFVSKLDFLIVSFYTLGCGHCKKLAPEYEKAANILSKHNPPLALAKVNIANEANEGLAGSDGSISIKIVREGGKNVQEYKGPYDADGIVKYVKRQYGPASVEIRTLEDAQIFLSDNKIAIVGIFPQFSGGKFENYTILAKKLRPTEEFFHTSDAKLLPRGESSVTGPLMRVFKPFDELYVDTQDFDVNALEKFVEKSIVPTVTIMDGDQKNQRLVDNFMYNSNSKVMLFINFNSEIAASFKYKYRELAELYKGDSLSFLMADIHVSSHSIKQYGIKDDQIPFIILLSDKTKYLKSNVEPGELSPWLKKYKNGELEPYIKSEPIPEHNDEPVKVVVAHTFQDVVFNSRKNVLLEFYAPSHKDCKELASVFEDLAISYQRDPDVIIAKFDIFANDLLHDFEIWTLPTVYFKSADGNISPYTGSKDDGDTTLISTLHRCFSRNVDHRL 1415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29081073 29094177 - ClCG11G015810.2 Cla11g01541 285363

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01541 1415 MobiDBLite consensus disorder prediction 446 462 - -
Cla11g01541 1415 MobiDBLite consensus disorder prediction 107 164 - -
Cla11g01541 1415 CDD PDI_b'_family 1181 1280 - -
Cla11g01541 1415 CDD PDI_a_family 962 1062 - -
Cla11g01541 1415 SUPERFAMILY Thioredoxin-like 1186 1298 IPR036249 -
Cla11g01541 1415 SUPERFAMILY Thioredoxin-like 961 1068 IPR036249 -
Cla11g01541 1415 ProSiteProfiles Thioredoxin domain profile. 1279 1415 IPR013766 -
Cla11g01541 1415 MobiDBLite consensus disorder prediction 398 445 - -
Cla11g01541 1415 Pfam Protein of unknown function (DUF630) 60 100 IPR006868 -
Cla11g01541 1415 Gene3D Glutaredoxin 1056 1161 - -
Cla11g01541 1415 PANTHER FAMILY PROTEIN, PUTATIVE (DUF630 AND DUF632)-RELATED 60 932 - -
Cla11g01541 1415 PANTHER UNCHARACTERIZED 60 932 - -
Cla11g01541 1415 Pfam Protein of unknown function (DUF632) 491 810 IPR006867 -
Cla11g01541 1415 MobiDBLite consensus disorder prediction 378 394 - -
Cla11g01541 1415 SUPERFAMILY Thioredoxin-like 1071 1177 IPR036249 -
Cla11g01541 1415 MobiDBLite consensus disorder prediction 851 874 - -
Cla11g01541 1415 MobiDBLite consensus disorder prediction 351 462 - -
Cla11g01541 1415 CDD PDI_b_family 1070 1166 - -
Cla11g01541 1415 Pfam Thioredoxin-like domain 1096 1278 - -
Cla11g01541 1415 Pfam Thioredoxin 1301 1393 IPR013766 -
Cla11g01541 1415 Pfam Thioredoxin 961 1063 IPR013766 -
Cla11g01541 1415 MobiDBLite consensus disorder prediction 301 323 - -
Cla11g01541 1415 Gene3D Glutaredoxin 1162 1295 - -
Cla11g01541 1415 Gene3D Glutaredoxin 1296 1405 - -
Cla11g01541 1415 SUPERFAMILY Thioredoxin-like 1269 1393 IPR036249 -
Cla11g01541 1415 Gene3D Glutaredoxin 951 1055 - -
Cla11g01541 1415 ProSitePatterns Thioredoxin family active site. 980 998 IPR017937 -
Cla11g01541 1415 MobiDBLite consensus disorder prediction 125 146 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01541 - - - csv:101217905 1512.28
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla08g00602 Cla11g01541 CCT
Cla08g00602 Cla11g01541 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01242 Cla-Chr7:29448493 Cla11g01541 Cla-Chr11:29081073 6.15E-36 dispersed
Cla07g01249 Cla-Chr7:29513101 Cla11g01541 Cla-Chr11:29081073 1.78E-21 dispersed
Cla08g00956 Cla-Chr8:22120321 Cla11g01541 Cla-Chr11:29081073 1.88E-58 dispersed
Cla08g00962 Cla-Chr8:22205556 Cla11g01541 Cla-Chr11:29081073 1.88E-58 dispersed
Cla09g00194 Cla-Chr9:1933736 Cla11g01541 Cla-Chr11:29081073 2.16E-36 dispersed
Cla11g00771 Cla-Chr11:11089585 Cla11g01541 Cla-Chr11:29081073 1.54E-13 dispersed
Cla02g00361 Cla-Chr2:3540142 Cla11g01541 Cla-Chr11:29081073 9.15E-131 transposed
Cla02g01182 Cla-Chr2:25309164 Cla11g01541 Cla-Chr11:29081073 1.53E-60 transposed
Cla02g01191 Cla-Chr2:25467473 Cla11g01541 Cla-Chr11:29081073 1.05E-06 transposed
Cla02g02344 Cla-Chr2:38509955 Cla11g01541 Cla-Chr11:29081073 7.23E-44 transposed
Cla07g00912 Cla-Chr7:25166672 Cla11g01541 Cla-Chr11:29081073 2.24E-08 transposed
Cla11g01163 Cla-Chr11:24381050 Cla11g01541 Cla-Chr11:29081073 1.21E-55 transposed
Cla11g01541 Cla-Chr11:29081073 Cla08g00602 Cla-Chr8:17933797 5.57E-154 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g250 Blo01g01298 . . . Bpe02g00639 . . Bma01g02074 Cmo04g02483 Cmo15g00679 . Cma09g00787 . . Sed01g3115 Cpe06g00621 . Bhi04g01901 Tan11g1265 Cmetu07g2195 . . . . Cla08g00602 Cam08g1016 Cec08g0606 Cco08g0717 Clacu08g0727 . Cre08g0535 Cone4ag1414 Cone7ag1524 Cone17ag1287 Cone20ag0440 Lsi04g02397 Csa04g01791 . Cme03g00538 Blo17g00175 Blo18g00181 . . Bpe02g01646 Bpe14g00385 Bma01g00810 Bma02g00216 . . Cmo09g00779 . . Car04g02297 Car15g00617 Cpe01g02058 . . . . . . . . Cla11g01541 Cam11g1603 Cec11g1631 Cco11g1633 Clacu11g1759 Cmu11g1576 Cre11g1994 Lsi08g00442 . Chy07g00630 Cme07g00838
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007330 0 3 0 0 1 0 1 1 0 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 3 2 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01541 Cla_Chr11 FPKM 34.347057 34.322109 68.08638 55.279995 24.954323 36.76236 26.694603 211.904617 234.238495 230.84639