Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01542 ATGGCGGAGATAGCGGTGTTCGACGGAGAAGCGGCGGAGAGAGTGGTGGCGGAGCTGAGGGAGAGCTATAATTCCGGCAAAACGCGAAGCTACGAATGGAGAGTGAATCAATTGAAAAATCTGTTGAAATTGGTTTGTGAAAACGAAGAAGAGATGGTTCAAACCGTTCATTCCGATCTTTATAAACCCGAATTTGAAGCCTTCGCTCATGAGGACAAAACCCAAAACGCCACACGACTTCTTGGTGGCATCGGAAATGGAAAAATGCGAATCGGAGGACGACACCTCTTTCTTAACGATTCGTCTTCTCCCTGGAAATCCACTCCCGTAATTCCCTCAACCAAGAATCGTTCGAATCAATTCCTACATTACAAGTTTCCTCTCTCTGTGTATTCTGATTCTTGCCGTCGGAGGCGGCGGCGATTCGTGATGTCGGAATCGGAGTCGGAGTTGGAGGTGTTCGACACAGCGGCGGCGACGGATTTGGTGAAGAAACTTAGACGTAGTTTTACTACCGGCAGGACTCGGAGCTATGAGTGGAGAGTGTCGCAGCTTGAGAGCCTCTTGAAGCTTAGCGTTGAGCATGAGGAAGATCTCTGCGAAGCGCTTCGCTCTGACCTTTCGAAGCCTGTGTTGGAATCTATCGTTCATGAGATAGCTCTATTAAAAGGTTCGTGTAAATTGGCACTTAAAGAACTCAGGCGTTGGATGGCACCAGAAAAGGTTAAAACTTCAATTACCACATTTCCTTCGTCTGGAGCAATTGTTCCAGAACCTTTCGTGTTATCTCTCGATCCAGTTGTTGGAGCAATAGCAGCTGGCAATGCTGTGGTTCTAAAGCCATCAGAAATTTCCCCAAGAACATCATCTTTGATGGCAAAACTTTTGGCGAAATATTTGGATACATCTGCTGTAAAAGTTGTTGAGGGTGCTGTTCCCGAAACTAATGCTTTGTTGGAGCAGAAGTGGGACAAAATATTTTACACAGGCAATGGAAGAGTGGGGCGGATAGTGATGGCAGCTGCTGCCAAGCATCTTACGCCAGTTGTTTTAGAGCTTGGAGGAAAATCTCCAGTAGTAGTTGATTCAGAAATCAATTTACAAGTGGAGTCTCTTAAACAAGAACTGGAGAGATTTTATGGAAAGAATCCGTTGGAAACTAAAGATTTATCTCGCATTGTGAATGCTAAACACTTTGATCGCTTGACAAGGCTCTTAGATGATGATAAAGTTTCTGGCAAGATCGTGCATGGAGGTGAAAAGGACAAAACAAAGCTACAGATTGCTCCCACCCTCTTATTGGATGTCCCTCGAGACTCACTAATTATGACGGAGGAGATATTTGGTCCCCTACTTCCCATTGTCACGGTCGACAAGGTGGAGGACAGCTTCGAAATAGTGAACTCGGGCACAAAGCCACTTGCAGCATATTTATTTACTAACAAAAAGAAGCTCAAGGAACGATTCGTGGCTTGTATCTCTGCAGGGGGTGTGGCCATCAATGAAACCGCCTTACATCTGACGATTAGCACGTTACCGTTCGGAGGAGTTGGAGAGAGTGGAATGGGAGCTTACCATGGAAAGTTCTCCTTTGATGCATTTAGCCATAAGAAGGCCGTTCTTTATCGAAGTTTCGCAGGCGATGCGCCGATGAGATATCCGCCATACACAAAGGGAAAGCTCAGAATTCTCAAGGCTCTTCTTGGAGGTGGCATATTGGGACTCATTCGTGCTTTACTTGGAACACTCCAATCCGTTACTACAACTTCTCCCTCTTTCTCTGTATATACTGATAGTTGTCGGCGGCGGCGACTCGCGATGTCGGAAACGAAGGTGTTCGATGCGGCGGCGGCGACGGAGTTGGTGAAGGAACTGAGAGGTAGTTTTGGCTCCGGCAACACTCGGAGCTACGAGTGGAGAGTGGCGCAGCTTGAGAGTCTCTTGAAGCTCAGCGTTGACCATGAGGAAGATATTTGCGATGCGCTTCGCTCTGACCTCTCCAAGCCTGCGTTGGAATCCGTTATTCATGAGATATCTATGGTAAAAAGTTCGTGTAAATTGGCACTTAAAGAACTCAGAAATTGGATGACACCAGAGAAGGTTCAAACTACAATTACCAGTTTTCCTTCGTCTGCTGCAATTGTACCAGAACCTTTGGTTGTTGGAGCAATAGCAGCTGGTAATGCTGTGGTTCTAAAGCCATCAGAAATTTCTCCAGCAACAGCATCTTTAATAGCAAAACTTCTTGAGAAGTATTTGGATACGTCTGCTGTAAAAGTTGTTGAGGGTGCTATTCCTGAAACTAGTGCTTTGCTGGAGCAAAAGTGGGACAAAATATTTTACACAGGCAATGGAAGAGTGGGGCGAATAGTGATGGCAGCTGCTGCCAAGCACCTTACGCCAGTTGTTTTAGAGCTTGGAGGAAAATCTCCAGTAGTAGTTGATTCAAAAATCAATTTACAAGTTGCCTGTAGGCGAATTATATCTGGTAAATGGGGTGGTAACAATGGACAAGCATGTGTTTCTCCTGATTACATCATAACTACGAAAGAATTTGCTCCAAAATTGGTGGAGTCTCTGAAACAAGAACTGGAGAGATTTTATGGAAAGAATCCGTTGGAATCTAAAGATATATCTCGCATTGTGAATGCTAGCCACTTTAATCGCTTGACCAAGCTCTTAGATGATGATGAAGTTTCTAGCAAGATTGTTCATGGAGGTGAAAAGGACAAAACCAAATTACAGATTGCTCCCACCCTCTTATTGGATGTCCCTCGAGACTCTTTGATTATGACGGAGGAGATATTTGGTCCCTTGCTTCCCATTATCACGGTAGACAAATTGGAGGACAGCTTCGAAATAGTGAATTCGGGCTCAAAGCCACTTGCAGCATATTTATTTACCAACAACAAAAAGCTCAAGGAACAGTTCGTGGCTTGTATCTCTGCAGGCGGCGTGGTTATCAATGACACCACCTTACATCTAGCTGTTAGCACACTACCATTTGGAGGAGTAGGGGAGAGTGGAATGGGATCTTGCCATGGGAAGTTTTCATTTGATGCATTTAGCCATAAGAAAGCTGTTCTTTATCGAAGTTTTGTAGGCGACGTGCCGATGCGATACCCACCTTACACAAACGGAAAGCTTAGATTTCTCAAAGCTCTTCTTGGAGGTGGCATTTTGGAGCTCATTCGTGCCCTTCTTGGTTGGTCGTAA 3216 45.12 MAEIAVFDGEAAERVVAELRESYNSGKTRSYEWRVNQLKNLLKLVCENEEEMVQTVHSDLYKPEFEAFAHEDKTQNATRLLGGIGNGKMRIGGRHLFLNDSSSPWKSTPVIPSTKNRSNQFLHYKFPLSVYSDSCRRRRRRFVMSESESELEVFDTAAATDLVKKLRRSFTTGRTRSYEWRVSQLESLLKLSVEHEEDLCEALRSDLSKPVLESIVHEIALLKGSCKLALKELRRWMAPEKVKTSITTFPSSGAIVPEPFVLSLDPVVGAIAAGNAVVLKPSEISPRTSSLMAKLLAKYLDTSAVKVVEGAVPETNALLEQKWDKIFYTGNGRVGRIVMAAAAKHLTPVVLELGGKSPVVVDSEINLQVESLKQELERFYGKNPLETKDLSRIVNAKHFDRLTRLLDDDKVSGKIVHGGEKDKTKLQIAPTLLLDVPRDSLIMTEEIFGPLLPIVTVDKVEDSFEIVNSGTKPLAAYLFTNKKKLKERFVACISAGGVAINETALHLTISTLPFGGVGESGMGAYHGKFSFDAFSHKKAVLYRSFAGDAPMRYPPYTKGKLRILKALLGGGILGLIRALLGTLQSVTTTSPSFSVYTDSCRRRRLAMSETKVFDAAAATELVKELRGSFGSGNTRSYEWRVAQLESLLKLSVDHEEDICDALRSDLSKPALESVIHEISMVKSSCKLALKELRNWMTPEKVQTTITSFPSSAAIVPEPLVVGAIAAGNAVVLKPSEISPATASLIAKLLEKYLDTSAVKVVEGAIPETSALLEQKWDKIFYTGNGRVGRIVMAAAAKHLTPVVLELGGKSPVVVDSKINLQVACRRIISGKWGGNNGQACVSPDYIITTKEFAPKLVESLKQELERFYGKNPLESKDISRIVNASHFNRLTKLLDDDEVSSKIVHGGEKDKTKLQIAPTLLLDVPRDSLIMTEEIFGPLLPIITVDKLEDSFEIVNSGSKPLAAYLFTNNKKLKEQFVACISAGGVVINDTTLHLAVSTLPFGGVGESGMGSCHGKFSFDAFSHKKAVLYRSFVGDVPMRYPPYTNGKLRFLKALLGGGILELIRALLGWS 1071
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29112558 29128705 + ClCG11G015830.1 Cla11g01542 285364

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01542 1071 PANTHER ALDEHYDE DEHYDROGENASE 608 1071 - -
Cla11g01542 1071 PANTHER ALDEHYDE DEHYDROGENASE 148 369 - -
Cla11g01542 1071 SUPERFAMILY ALDH-like 620 1045 IPR016161 GO:0016491
Cla11g01542 1071 PANTHER ALDEHYDE DEHYDROGENASE 608 1071 IPR012394 GO:0006081
Cla11g01542 1071 PANTHER ALDEHYDE DEHYDROGENASE 148 369 IPR012394 GO:0006081
Cla11g01542 1071 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 627 1023 IPR016162 GO:0016491
Cla11g01542 1071 PANTHER ALDEHYDE DEHYDROGENASE 369 581 IPR012394 GO:0006081
Cla11g01542 1071 PANTHER ALDEHYDE DEHYDROGENASE 5 71 IPR012394 GO:0006081
Cla11g01542 1071 Pfam Aldehyde dehydrogenase family 614 1028 IPR015590 GO:0016491
Cla11g01542 1071 Pfam Aldehyde dehydrogenase family 369 540 IPR015590 GO:0016491
Cla11g01542 1071 Pfam Aldehyde dehydrogenase family 155 368 IPR015590 GO:0016491
Cla11g01542 1071 SUPERFAMILY ALDH-like 161 555 IPR016161 GO:0016491
Cla11g01542 1071 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 139 354 IPR016162 GO:0016491
Cla11g01542 1071 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 804 811 IPR029510 GO:0016491
Cla11g01542 1071 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 351 358 IPR029510 GO:0016491
Cla11g01542 1071 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 809 1008 IPR016163 GO:0016620
Cla11g01542 1071 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 355 547 IPR016163 GO:0016620
Cla11g01542 1071 PANTHER ALDEHYDE DEHYDROGENASE 5 71 - -
Cla11g01542 1071 PANTHER ALDEHYDE DEHYDROGENASE 369 581 - -
Cla11g01542 1071 SUPERFAMILY ALDH-like 2 73 IPR016161 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01542 K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] - csv:101219569 836.639
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00849 Cla-Chr7:23698655 Cla11g01542 Cla-Chr11:29112558 1.52E-06 dispersed
Cla11g01542 Cla-Chr11:29112558 Cla06g01634 Cla-Chr6:29857602 3.25E-21 dispersed
Cla11g01542 Cla-Chr11:29112558 Cla02g01637 Cla-Chr2:31170876 2.87E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g247 . Blo12g01125 . Bda03g00014 . Bpe04g00009 Bma04g00013 . . . Cma01g01383 Cma09g00785 . . . Cpe06g00619 . . . . . . . . . . . . . . . Cone4ag1417 Cone7ag1521 . . Lsi04g02401 Csa04g01789 . . . . . . . . . . . Cmo01g01433 Cmo09g00776 . . . Car09g00694 . Cpe02g00556 Bhi09g02693 . . . Hepe01g2295 Mch11g0839 . Cla11g01542 Cam11g1605 Cec11g1633 Cco11g1636 Clacu11g1762 Cmu11g1578 Cre11g1996 . . Chy07g00628 Cme07g00835
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla06g01016 . 1 505 Aldehyde Dehydrogenase Gene Family AT3G24503 69.4 1.6e-210 729.2
Cla06g01654 . 66 550 Aldehyde Dehydrogenase Gene Family AT3G24503 54.1 2.3e-153 539.3
Cla02g01637 . 245 714 Aldehyde Dehydrogenase Gene Family AT3G24503 52.9 2.6e-149 525.8
Cla06g01654 . 1 550 Aldehyde Dehydrogenase Gene Family AT3G48000 76.2 2.2e-250 861.7
Cla02g01637 . 211 714 Aldehyde Dehydrogenase Gene Family AT3G48000 72.9 5.1e-231 797.3
Cla06g01016 . 18 505 Aldehyde Dehydrogenase Gene Family AT3G48000 55.3 3.2e-161 565.5
Cla06g01654 . 1 394 Aldehyde Dehydrogenase Gene Family AT1G23800 72.3 6.2e-165 577.4
Cla02g01637 . 225 564 Aldehyde Dehydrogenase Gene Family AT1G23800 75.6 1.8e-156 549.3
Cla06g01016 . 18 349 Aldehyde Dehydrogenase Gene Family AT1G23800 54.5 1.5e-102 370.2
Cla11g01542 . 613 1071 Aldehyde Dehydrogenase Gene Family AT4G34240 60.3 2.4e-164 575.9
Cla11g01542 . 678 1069 Aldehyde Dehydrogenase Gene Family AT1G44170 68.1 1.3e-162 569.7
Cla02g02255 . 62 455 Aldehyde Dehydrogenase Gene Family AT1G44170 50.3 1.4e-111 400.2
Cla07g00849 . 21 499 Aldehyde Dehydrogenase Gene Family AT4G36250 63.0 7.1e-184 640.6
Cla02g02255 . 2 457 Aldehyde Dehydrogenase Gene Family AT4G36250 54.9 5.5e-152 534.6
Cla02g01832 . 46 614 Aldehyde Dehydrogenase Gene Family AT1G79440 55.3 3.8e-162 568.5
Cla09g01595 . 5 505 Aldehyde Dehydrogenase Gene Family AT2G14170 75.7 1.6e-222 769.2
Cla01g01786 . 262 696 Aldehyde Dehydrogenase Gene Family AT2G14170 68.3 2.4e-181 632.5
Cla06g01634 . 1 507 Aldehyde Dehydrogenase Gene Family AT1G74920 80.9 7.7e-250 859.8
Cla06g01634 . 1 509 Aldehyde Dehydrogenase Gene Family AT3G48170 80.7 1.1e-251 865.9
Cla02g01678 . 46 558 Aldehyde Dehydrogenase Gene Family AT2G24270 87.7 6.5e-265 909.8
Cla01g01428 . 21 576 Aldehyde Dehydrogenase Gene Family AT5G62530 75.0 4.3e-257 884.0
Cla06g00431 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 76.7 1.2e-276 949.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002493 2 3 2 2 2 0 3 2 0 2 1 2 3 2 2 3 2 3 3 2 1 1 1 1 1 2 1 3 2 2 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01542 Cla_Chr11 FPKM 41.825912 48.445286 30.979288 30.061893 32.867546 33.119553 31.939981 33.854282 34.809494 38.435963