Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01548 ATGCCACCTTCCCCTTCCTTCCCATCTGGGTCTCGTGGAAAATGGAGGAAAAAGAAGAGGGATTCGCAAATTGGCCGCAGAAACAACTACGCCAACAATAATAACAACGGAATCAACAGGCATGAAGATGAGGATGAAGATGAAGACCTTGCTGCTGCTGAAAATGAGGAAATGGAACGTGATAACAACGATGATTCTGAGGACCCTCAGATTACCCTTCACTCCACGCCCAATTCCACTATTCAGGAGACTGAACTTCTGTCGGATGATAAAGTTCGAGTCTCCGAGTTTCCTCAGGTCATTAAGCGGGTTGTCACTCGCCCTCACTCTTCTGTGTTGGCTGTTGTGGCAATGGAGAGGACAAATCAGTACGGAGAGAGTAAGGGGATGTCTGGAAATTCCTTGATTTTGGAGAATGTGTCTTATGGGCAACTCCAGGCACTGTCTGCTATGCCCGCGGATAGTCCGGCTTTGCTGGATCAGGAGAGGGCGGAGGCTGGGAACGCCGCGTATGTAATAACTCCACCACCGATTATGGAAGGGCGTGGCGTGGTTAAGAGGTTTGGGAGTAGGGTACATGTCGTCCCCATGCACTCAGATTGGTTTTCACCCACCACGGTGCATCGACTTGAGAGACAAGTTGTTCCACATTTTTTCTCTGGGAAATTGCCCGACCGCACTCCTGAAAAGTATATGGAGATTCGAAATTTTGTTGTTGCCAAATACATGGAGAATCCCGAGAAAAGGGTCACAGTTTCAGACTGCCAAGGATTGGTTGATGGTGTTAGTAATGAAGATTTAACTCGAATTGTTCGATTTCTTGATCATTGGGGTATTATTAATTATTGTGCTCCTACACCTAGCTGTGAACCATGGAATAGTAGTTCATACTTGAGAGAAGATATGAATGGTGAGATTCACGTGCCATCAGCTGCTTTGAAGCCTATTGATAGCTTGGTCAAATTTGACAAACCAAAATGTAGGCTCAAGACAGCTGATGTCTATTCAGCACTTCCATGCCACGATGACATTGATGGTTTGTGTGATTTGGATAACAGAATTCGAGAGCGTCTAGCTGAAAATCATTGTAGCTCTTGTTCTCGGTCTGTTCCGATTGCATACTACCAATCACAGAAGGAGGTTAGTTTCCATCACCATATTGTACTCCATTGTTTAGCTGAATCAGAGTACCCCAGGGTAATGGAGGGTTTCTGTTTTGGGAATCTTGGAAAAGGGGCCTTTACTTGCTATGAAGCGGAACATGAAAGTTTGGATCTCGAGGCCATAGGAATTCTTTTACCCTTTGATAGTGAGCTGATACCATGCAAGATAATTGCTTCTGTTGTTGATGTTTTACTTTGCTCTGACTGCTTCCATGAAGGCAAGTATGTTGCTGGCCATTCAAGCATTGATTTTCTGAGGGTGGACATGGCGAAAGATTATGGTGAATTAGATAGTGAAAATTGGACTGATCAAGAAACTCTATTGCTTTTAGAGGCAATAGAATTGTATAATGAGAATTGGAATGAAATTACCGAACATGTTGGGTCCAAGTCTAAAGCTCAATGCATTATACATTTTCTTCGTCTATCAGTGGAGGATGGCCTTCTAGAAAACGTTGATGTGCCTGGGGTTTCTCTCTCATCAAATTCTTCACATGGAGAAGATAATGAGAAGTCACGTTCAAAGATGAATGGAAACATAGCAGGATCTTCCTCTCAAGAGAATAGAGAGATGCATGATAGGCTTCCCTTTGCCAATTCTGGGAACCCAGTCATGGCGTTGGTTGCTTTTCTCGCATCGGCTATTGGACCAAGAGTTGCTGCATCTTGTGCTCATGCATCCTTAGCTGCATTATCTGAGGACAGTGTAGCTTCTTCTGGGAGCATCTTTCAGATGGAGGGTTCTGTAAACACGAATAATAGTAACTGGAAGATATTACAACATTATGTCCATTTAGAATTGGTTGCTTTTCTCGCATCGGCTATTGGACCAAGAGTTGCTGCATCTTGTGCTCATGCATCCTTAGCTGCATTATCTGAGGACAGTGTAGCTTCTTCTGGGAGCATCTTTCAGATGGAGGGTTCTGTAAACACGAATAATAGGACGAATGTGGACATCAAACAAGTCAGAGACGGAGGCTCCTTTGGAGAACATCCAAACTCAATCGATCAAAAAGATGAGAACAAGGCAGAGACAGAAGCTACACTATTATCTTCTGAAAGAGTTAAAGTTGCAGCAAAAGCAGGCCTTGCTGCCGCTGCAACAAAGGCGAAGTTGTTTGCTGACCATGAAGAACGAGAAATCCAACGATTGTCTGCTAATATTATAAATCATCAGTTAAAAAGACTGGAGCTGAAGCTGAAGCAGTTTGCGGAAGTAGAAACCTTCTTGATGAAGGAATGCGAACAAGTTGAGAGGACAAGGCAGAGGTTTGTCGCAGAGCGAGCAAGAATGTTAGGTGTTCAATTTGGGCCTGCTGGAGTTACGCCACCTGCGAGTTTACCAGGTGTTATCCCTTCCATGGTAAACAACAGCAACACAAACAATAGGCAGAATATGATCTCACCTCCAGCTTCACAGCCGAGCGTTTCGGGGTATAGCAACAACCAACCACTTCACCCCCACATGTCATACATGCCCCGACAGTCAATGTTTGGTTTGGGACAAAGGCTACCCTTATCGGCAATTCAGCAGCAGCAGCAGCAGCAGCCGCCCTCCACCTCTTCTTCTAACCCCATGTTCAACGGTCCAAGCAATGCACAGCCTTCTCTCAGTCACCCAATGATGAGGCCAGTTACTGGATCCAGCTCTGGATTAGGGTGA 2826 44.87 MPPSPSFPSGSRGKWRKKKRDSQIGRRNNYANNNNNGINRHEDEDEDEDLAAAENEEMERDNNDDSEDPQITLHSTPNSTIQETELLSDDKVRVSEFPQVIKRVVTRPHSSVLAVVAMERTNQYGESKGMSGNSLILENVSYGQLQALSAMPADSPALLDQERAEAGNAAYVITPPPIMEGRGVVKRFGSRVHVVPMHSDWFSPTTVHRLERQVVPHFFSGKLPDRTPEKYMEIRNFVVAKYMENPEKRVTVSDCQGLVDGVSNEDLTRIVRFLDHWGIINYCAPTPSCEPWNSSSYLREDMNGEIHVPSAALKPIDSLVKFDKPKCRLKTADVYSALPCHDDIDGLCDLDNRIRERLAENHCSSCSRSVPIAYYQSQKEVSFHHHIVLHCLAESEYPRVMEGFCFGNLGKGAFTCYEAEHESLDLEAIGILLPFDSELIPCKIIASVVDVLLCSDCFHEGKYVAGHSSIDFLRVDMAKDYGELDSENWTDQETLLLLEAIELYNENWNEITEHVGSKSKAQCIIHFLRLSVEDGLLENVDVPGVSLSSNSSHGEDNEKSRSKMNGNIAGSSSQENREMHDRLPFANSGNPVMALVAFLASAIGPRVAASCAHASLAALSEDSVASSGSIFQMEGSVNTNNSNWKILQHYVHLELVAFLASAIGPRVAASCAHASLAALSEDSVASSGSIFQMEGSVNTNNRTNVDIKQVRDGGSFGEHPNSIDQKDENKAETEATLLSSERVKVAAKAGLAAAATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETFLMKECEQVERTRQRFVAERARMLGVQFGPAGVTPPASLPGVIPSMVNNSNTNNRQNMISPPASQPSVSGYSNNQPLHPHMSYMPRQSMFGLGQRLPLSAIQQQQQQQPPSTSSSNPMFNGPSNAQPSLSHPMMRPVTGSSSGLG 941
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29191602 29199542 + ClCG11G015890.1 Cla11g01548 285370

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01548 941 MobiDBLite consensus disorder prediction 844 877 - -
Cla11g01548 941 Pfam SWIRM-associated region 1 749 819 IPR032451 -
Cla11g01548 941 MobiDBLite consensus disorder prediction 42 64 - -
Cla11g01548 941 Pfam SWIRM domain 196 282 IPR007526 GO:0005515
Cla11g01548 941 ProSiteProfiles Myb-like domain profile. 481 531 IPR001005 -
Cla11g01548 941 ProSiteProfiles SANT domain profile. 484 535 IPR017884 -
Cla11g01548 941 CDD SANT 488 530 IPR001005 -
Cla11g01548 941 ProSiteProfiles SWIRM domain profile. 193 291 IPR007526 GO:0005515
Cla11g01548 941 MobiDBLite consensus disorder prediction 1 87 - -
Cla11g01548 941 Pfam Myb-like DNA-binding domain 487 529 IPR001005 -
Cla11g01548 941 Gene3D - 485 535 - -
Cla11g01548 941 PANTHER SWI/SNF COMPLEX-RELATED 434 644 - -
Cla11g01548 941 PANTHER SWI/SNF COMPLEX-RELATED 74 326 - -
Cla11g01548 941 SUPERFAMILY Homeodomain-like 192 290 IPR009057 -
Cla11g01548 941 MobiDBLite consensus disorder prediction 547 577 - -
Cla11g01548 941 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 434 644 - -
Cla11g01548 941 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 655 940 - -
Cla11g01548 941 MobiDBLite consensus disorder prediction 844 881 - -
Cla11g01548 941 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 74 326 - -
Cla11g01548 941 MobiDBLite consensus disorder prediction 69 85 - -
Cla11g01548 941 SMART sant 485 533 IPR001005 -
Cla11g01548 941 Coils Coil 762 782 - -
Cla11g01548 941 MobiDBLite consensus disorder prediction 896 941 - -
Cla11g01548 941 Gene3D - 199 286 IPR036388 -
Cla11g01548 941 PANTHER SWI/SNF COMPLEX-RELATED 655 940 - -
Cla11g01548 941 SUPERFAMILY Homeodomain-like 486 535 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01548 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C - csv:101220514 974.926
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g02005 Cla-Chr9:37615892 Cla11g01548 Cla-Chr11:29191602 9.95E-07 dispersed
Cla11g01548 Cla-Chr11:29191602 Cla11g01856 Cla-Chr11:32085865 2.71E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g235 . Blo12g01124 . Bda03g00015 . Bpe04g00010 Bma04g00014 . . . Cma01g01377 Cma09g00777 . . . Cpe06g00612 . . . . . . . . . . . . . . . . . . Cone20ag0433 Lsi04g02409 Csa04g01782 . . . . . . . . . . Sed06g0997 Cmo01g01428 Cmo09g00769 . . . Car09g00686 . Cpe02g00561 Bhi09g02703 Tan01g4053 Cmetu07g1927 . Hepe01g1595 Mch11g0847 . Cla11g01548 Cam11g1612 Cec11g1641 Cco11g1642 Clacu11g1770 Cmu11g1587 Cre11g2004 . . Chy07g00621 Cme07g00826
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005902 1 1 1 1 1 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01548 Cla_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0