Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01553 ATGGCGCCATTGTTGCAGAGCTCTCAACCATGGGTGGAGAAATATCGACCGAAGCAAGTGAAAGATGTGGCGTATCAGGATGAAGTGGTTCGGGTCCTCACCAACACCCTCGAGACTGCTAGTTGTCCCCATATGCTCTTCTATGGACCGCCTGGTACCGGAAAAACCACCACCGCTCTGGCAATTTCTCACCAACTATTCGGTCCCGAACTTTACAAGTCCAGAGTTTTAGAGTTGAATGCAAGTGATGACCGTGGGATCAATGTTGTTCGGACTAAGATAAAAGATTTTGCTGGTGTTGCAGTAAGCAGTGGCCAACGCCAAGGGGGTTATCCTTGTCCACCATTCAAGATAATCATTCTGGATGAGGCTGATTCAATGACGGAAGATGCTCAGAATGCTCTGAGGCGTACCATGGAAACACACTCTAAAGTGACACGCTTCTTTTTTATATGCAACTATATCAGCAGGATTATAGAGCCCCTTGCATCAAGGTGTGCAAAGTTTAGGTTTAAGCCACTCTCTGAAGAAGTTATGAGCAAGCGTATATTGCATATTAGTAATGAAGAAGGTCTTAGTCTAGATGGAGAGGCTCTTTCAACCTTAAGTTCAATCTCTCAAGGTGACCTACGTCGAGCTATCACATATTTACAGTCAGCAGCACGCTTATTTGGATCATCGATCTCTTCCAAGGATTTGATTAGTGTATCTGGGATTATCCCTCGGGAGGTTGTTGATGCACTTTTCACTGCTTGTAAAAGTGGTAGCTTTGATATTGCAAACAAGGAAGTCAACAATGTGCTTGCAGAAGGATATCCAGTGGCTCAAATGCTTTCACAGATATTTGAGGTGGTTGTTGAAGACAATGATTTGCAAGATGAACAGAAGGCCAAGATATGCAAGAAGTTGGCCGAAGCAGACAAGTGTCTTGTCGATGGCGCGGATGAATATTTGCAACTGCTCGATGTGGTTAGTCAAATGATGCAAGCTTTAAGCAGTATGCAATCGTAA 1011 44.21 MAPLLQSSQPWVEKYRPKQVKDVAYQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTALAISHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHISNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGIIPREVVDALFTACKSGSFDIANKEVNNVLAEGYPVAQMLSQIFEVVVEDNDLQDEQKAKICKKLAEADKCLVDGADEYLQLLDVVSQMMQALSSMQS 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29267069 29272253 + ClCG11G015940.1 Cla11g01553 285375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01553 336 Pfam ATPase family associated with various cellular activities (AAA) 45 172 IPR003959 GO:0005524|GO:0016887
Cla11g01553 336 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 7 330 - -
Cla11g01553 336 PANTHER REPLICATION FACTOR C SUBUNIT 4 7 330 - -
Cla11g01553 336 CDD HLD_clamp_RFC 174 233 - -
Cla11g01553 336 SUPERFAMILY post-AAA+ oligomerization domain-like 240 329 IPR008921 GO:0003677|GO:0006260
Cla11g01553 336 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 233 IPR027417 -
Cla11g01553 336 Pfam Replication factor C C-terminal domain 241 326 IPR013748 -
Cla11g01553 336 Gene3D - 3 173 IPR027417 -
Cla11g01553 336 Gene3D - 240 330 - -
Cla11g01553 336 CDD AAA 26 166 - -
Cla11g01553 336 Gene3D - 176 239 - -
Cla11g01553 336 SMART AAA_5 41 174 IPR003593 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00273 Cla-Chr5:2461329 Cla11g01553 Cla-Chr11:29267069 3.57E-10 dispersed
Cla08g00608 Cla-Chr8:17999191 Cla11g01553 Cla-Chr11:29267069 1.46E-59 dispersed
Cla10g00332 Cla-Chr10:4329418 Cla11g01553 Cla-Chr11:29267069 7.22E-22 dispersed
Cla10g00713 Cla-Chr10:11265051 Cla11g01553 Cla-Chr11:29267069 3.27E-17 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01553 K10755 - csv:101221224 615.535