Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01554 ATGGCAATTCCAGTCATTGATTTCTCTAAGCTTAATGGAGAAGAAAGGGCCAAAACATTGGCTCAAATAGCGAATGGCTGTGAAGAATGGGGATTCTTTCAGCTGGTGAACCATGGGATTCCTGAGGAGCTCCTAGAGAGGGTGAAGAAGATAACTTCAGAGTGCTACAAGGTGGAAAGAGAAGAAAGTTTCAAGAGTTCAAAACCTGTGAAGCTCCTGAATGATTTGCTGGAGAACAAGAGTGGTGAGAAACTAGAAAATCTTGATTGGGAAGATGTCTTCCTTATCCATGATAACAACGAATGGCCCTCCAACATTCCTGGATTCAAGGAAACCATGAAGGAGTACAGATCAGAGCTGAAGAAGCTAGCTGAAAAAGTGATGGCAGTGATGGATGAGAACTTAGGTTTACCTGAAGGATACATAAAGGCTGCCTTCAATGGTGGCGAAGGGCAGGAAAAGGCCTTCTTCGGCACCAAAGTCAGCCACTACCCACCATGCCCACACCCGGAGCTGGTGAATGGCCTCCGTGCCCACACCGATGCTGGCGGTGTCATCTTGCTCTTCCAAGATGACGGGGTGGGAGGCCTTCAAATCCTGAAAGATGGGCAGTGGATAGATGTCCAGCCATTGCCCAACTCCATAGTCATCAACACAGGTGATCAGATTGAGGTCCTGAGCAATGGGAGATACAAGAGTGTTTGGCACCGGGTTTTGGCCACCCCAAATGGGAACAGGAGATCGATTGCTTCGTTTTACAACCCATCAATGGAAGCCACCATAGCTCCTGCACCACAGCTGGTGGATAAAGCAAACCAGGAGGTGGAAGAAGGATATCCCAAGTTTGTGTTTGGAGACTACATGTCAGTCTATGCGGAGCAGAAGTTCCTCCCAAAGGAACCAAGGTTTCAAGCTGTCAGGGCAATATGA 930 47.96 MAIPVIDFSKLNGEERAKTLAQIANGCEEWGFFQLVNHGIPEELLERVKKITSECYKVEREESFKSSKPVKLLNDLLENKSGEKLENLDWEDVFLIHDNNEWPSNIPGFKETMKEYRSELKKLAEKVMAVMDENLGLPEGYIKAAFNGGEGQEKAFFGTKVSHYPPCPHPELVNGLRAHTDAGGVILLFQDDGVGGLQILKDGQWIDVQPLPNSIVINTGDQIEVLSNGRYKSVWHRVLATPNGNRRSIASFYNPSMEATIAPAPQLVDKANQEVEEGYPKFVFGDYMSVYAEQKFLPKEPRFQAVRAI 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29280900 29282555 + ClCG11G015950.1 Cla11g01554 285376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01554 309 Gene3D - 2 309 IPR027443 -
Cla11g01554 309 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE 5-LIKE 2 307 - -
Cla11g01554 309 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 2 307 - -
Cla11g01554 309 Pfam 2OG-Fe(II) oxygenase superfamily 162 255 IPR044861 -
Cla11g01554 309 Coils Coil 106 133 - -
Cla11g01554 309 SUPERFAMILY Clavaminate synthase-like 1 302 - -
Cla11g01554 309 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 155 255 IPR005123 -
Cla11g01554 309 Pfam non-haem dioxygenase in morphine synthesis N-terminal 3 100 IPR026992 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01554 K05933 E1.14.17.4; aminocyclopropanecarboxylate oxidase [EC:1.14.17.4] - csv:116406307 610.527
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01770 Cla-Chr2:32679422 Cla11g01554 Cla-Chr11:29280900 1.19E-110 dispersed
Cla11g00166 Cla-Chr11:1968804 Cla11g01554 Cla-Chr11:29280900 1.45E-86 dispersed
Cla11g01554 Cla-Chr11:29280900 Cla07g01663 Cla-Chr7:33906518 2.93E-65 dispersed
Cla11g01554 Cla-Chr11:29280900 Cla09g01044 Cla-Chr9:11090922 3.57E-106 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g217 Blo01g01306 Blo12g01119 . Bda03g00022 Bpe02g00631 . Bma04g00019 Bma01g02087 . . Cma01g01368 Cma09g00772 . . . Cpe06g00608 . . . . . . . . . . . . . . . . . Cone17ag0821 Cone20ag0425 Lsi04g02415 Csa04g01778 . . Blo17g00170 . . Bda13g01469 Bpe02g01655 Bpe14g00396 . Bma02g00205 . Cmo01g01420 Cmo09g00764 . . . Car09g00682 . Cpe02g00569 Bhi09g02709 . . . . Mch11g0852 . Cla11g01554 Cam11g1619 Cec11g1646 Cco11g1647 Clacu11g1776 Cmu11g1592 Cre11g2010 . . . Cme07g00816
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003595 4 1 3 4 3 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 2 2 1 1 1 1 1 1 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01554 Cla_Chr11 FPKM 14.922758 13.838924 12.951986 15.904696 12.920006 14.287641 12.214957 21.775343 21.952332 21.631172