Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01556 ATGGATGGATGGGCGACACTACAACTTCATCTCATAAAACCCTTCCCGCCATTCACAGTCTCACAGTCTCACTCTTTTCATTGTTCTGATTTCTCTCAAAAATCAAAATCTTCTCTCTCGTCGGAAGAGGAAGTGGACGAAGCAACGGCCGAGATGCTGAAGCCGAAACCCTTCATCGGAGCTAATGTGTTCGTCTCCCGCAATCTTGTCGCTCCGGAGATGTTCGACGCTCTTCACGACGCTCTGAAGCAGAATGGGGCTGAGGTTTTCCTCTGTTGCGATCCCTCTCGAAACGGTCCTAACGATTATCATGTTATCTCCTCGGCCGATCACGAAAAGTTCGAGGATCTTCGCGCGAAGGGATGCAATCCGACGTCTGGGCCTTGGTGCGTCGCTGACGACTTGAATTTCTGTTCGGAAGGTCCTCAGTGTGTGATGTCATGTGCAAAAGAGTACAGACCCCTTCCTCAACAGGGTTTTACTTGCTGCCTTGCAATGGATGGTGTGAAAATTCTGGCATCCGGTTTTCAGGAAGATGAAAAGGTTGAGATAGGGAAGTTAGTTAATGCAATGGGAGGAGTATTGCATACGAAAGCCTCTCTAGATGTCAGCTTTGTTATTGCTAAGAATGCTTTGGCTGCGAAATACAAGTGGGCACTAAACATTTCAAAGAAACCAATCGTGACATTTGCTTGGTTACAACAATGCTGGATTGAACATCGTGTAGTGCCTCAGGAGGGATATCGAGTCCCTCCATTTTCTGGATTGAATATTTCGGTATCTAGAATTCCTGCAGGTGAGCGCAAGGAGATTGAAAAGCTTATCTTGCAAAATGGTGGAAGATACTCTGCCGATCTTACGAGAAAGTGTACACATTTGATATCTCCTGAAGGTGACAAGTACAAGGTTGCACGGACATGGGGCCGTATCAATATTGTTACTCGAAAATGGTTTGATCAGTCCATAGCTAGAAAAGCATGTCTTAATGAGGAGTCATACCCTGTTGGTAGCATTTCCGGAACTTCAAATAAAATGACGAGGGGCTGCTTGACTGCTCACAATAGCCAAGAAAAGGTTACTGGGAACTTGCAAACTGTACCGTCCTCATTTATTGCTGATTCAAATTTCGCAGCAGTTTCTGGTCCTGGGTTTTCAGATATGGATTTTGAAGCTTCACAGAGCACATCTATGTTTTCAGATGCTTCTCATTTTATAAATGAGGTTGATGTTGAAGTTCCAGTTGGCATGGGAAAGAACAAAGAAAACACCAATAATTGTATTGCGAATGACTTTCAGTCTGAAGACAACGACCTATATTTGTCAGCATGTAGAATAAAAGTTGTTGGGTTTGAAGCTTCTGAGATGCGAAAGATTGTGAATATGATTCTCAGAGGTGGAGGCTCCAGATACATGTTGTTCAATGACAAATTAACACACATAATAGTTGGAAATCCATCGGAAATGGAGAAAAAGGAGGTTAGAGATATTGCAGCTTCAGGAGTCATTCATGTGGTTAGAACCAACTGGCTTGAAGATTGTGATCGTCAGAAGAAGGAGATCCCTATTCTTAGTAGACACATGGCATATGATGAACTGATTCCTAAAGCCAGTAAAACGAGCACCATCGTCATGGATCGGAATAAAGTTCCAAATGTTCATCCAATCATGCCATCAAATGTGTTAGAAGGAAATATTCATGTTAGAATTGGAAAGACATCAGTGACAGAGGAAACAATTCAAGAAAAAAGTGAAACAAACGTGAGTGGAGACAGGACCATGAAATTATCCCAGAAAAGCCAACAATGTGTAGCAAATGGTACAAACAAGAGTCAAGAAAAGATGCGGCGTGATTTCGTGGTTCCAAATGGGAATTCATCATGTGTGTTTAGGGGAAAAATATTTTGTTTTTCTAGTTCCTTCCCAGAAGATCGGAGAGGTGAAATTGTTGAATGGATAAATCAAGGGGGAGGTGAGGTTGTTGAAGATCGTATGAGGAAGAAAGTGCACTTCACTGTTGAATGTCATGGTGAGATACCAAGGGGTACAGATGTGCATACTACTTACGTATCAAGTCATTGGGTCCGATCATGTTTAGAGGATGGATGCTTGTGGGATACCAATGGACACATTCTCTATTCTCCTCTTCCTTGCTGTGTCCCTTTGTCTGGATTTGAAAAGATACGGTTCTGTGTTTCACAATATGATGATAAAGACAGAGTATTGTTAAGAAATCTGTGTTTTGTACTTGGGGCCAAGTTTGTGGAGAAGTTGACAAAGAAGGTAACCCATCTAATATGTAAGTTTTCCGATGGGACAAAGTATGAGGCTGCTTGTAAATGGGGAATACATTCAGTTACAGCTGAATGGATATATGAATGTGTCAGACAGAGTAAGATTGTTTCTCTTGATTTGTATCGCCCAAAAGAAGTTACAGCTCAAGACAGAGCCGCGGGCATATGCACTGTCAGTCAGTTTCCTACTCAAGCCGTCCAAATGATAGCCAGTGAAAGTGAATCCCAGTTCCCCATCAATTCTGCTGTCCCGAGAGACCAATCAGCTGGAACTAATAGTAGCACTATAGGAGAAGTTGAACAAATAAGTTTTACTAAAAAAAAGCGCAAGTTCCTTGACGAAGCTGTACAAAAGCGTTCACTTTTTGTTGGAAACAGTTCCAGTCATTTTGACTGCAATTTGAACTCCACAAAAGAAACTACATCAAAATCCTCTGTACTAACTTCACATGTCCCTGATGTCGCTGCTGCAATTGAGGACTTGTTGGAGCAGACAACTAAGATTCATGATCAGAAGTCACCTGGAAAGACTGGCTGCGACAAAAGTACTTTTCCACCTGACTGTTCGGTCGTTGGTCAAGAACATTCAGAAGCTCCTCCAATTGGTGGTTTATCTAACCAGTGGTCAAAAAGAGCTGAAAGAAAAGAAGACATTAGCAATCCTACTACTGGAGATGGGAGTGTAGGCATATATGATGGCTTTAGTGAAACACAAACTGACTCTCAGGTTGTGGGTTATGAAGAGGATTTGTCCGGAAGGCAAATGCTCATAGACAGAGTTCGAACCCGGAGTAGCATGACTTGA 3096 42.41 MDGWATLQLHLIKPFPPFTVSQSHSFHCSDFSQKSKSSLSSEEEVDEATAEMLKPKPFIGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSRNGPNDYHVISSADHEKFEDLRAKGCNPTSGPWCVADDLNFCSEGPQCVMSCAKEYRPLPQQGFTCCLAMDGVKILASGFQEDEKVEIGKLVNAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVTFAWLQQCWIEHRVVPQEGYRVPPFSGLNISVSRIPAGERKEIEKLILQNGGRYSADLTRKCTHLISPEGDKYKVARTWGRINIVTRKWFDQSIARKACLNEESYPVGSISGTSNKMTRGCLTAHNSQEKVTGNLQTVPSSFIADSNFAAVSGPGFSDMDFEASQSTSMFSDASHFINEVDVEVPVGMGKNKENTNNCIANDFQSEDNDLYLSACRIKVVGFEASEMRKIVNMILRGGGSRYMLFNDKLTHIIVGNPSEMEKKEVRDIAASGVIHVVRTNWLEDCDRQKKEIPILSRHMAYDELIPKASKTSTIVMDRNKVPNVHPIMPSNVLEGNIHVRIGKTSVTEETIQEKSETNVSGDRTMKLSQKSQQCVANGTNKSQEKMRRDFVVPNGNSSCVFRGKIFCFSSSFPEDRRGEIVEWINQGGGEVVEDRMRKKVHFTVECHGEIPRGTDVHTTYVSSHWVRSCLEDGCLWDTNGHILYSPLPCCVPLSGFEKIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFSDGTKYEAACKWGIHSVTAEWIYECVRQSKIVSLDLYRPKEVTAQDRAAGICTVSQFPTQAVQMIASESESQFPINSAVPRDQSAGTNSSTIGEVEQISFTKKKRKFLDEAVQKRSLFVGNSSSHFDCNLNSTKETTSKSSVLTSHVPDVAAAIEDLLEQTTKIHDQKSPGKTGCDKSTFPPDCSVVGQEHSEAPPIGGLSNQWSKRAERKEDISNPTTGDGSVGIYDGFSETQTDSQVVGYEEDLSGRQMLIDRVRTRSSMT 1031
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29283771 29301130 - ClCG11G015970.1 Cla11g01556 285378

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01556 1031 CDD BRCT 169 236 - -
Cla11g01556 1031 Gene3D BRCT domain 721 814 IPR036420 -
Cla11g01556 1031 ProSiteProfiles BRCT domain profile. 248 335 IPR001357 -
Cla11g01556 1031 ProSiteProfiles BRCT domain profile. 435 527 IPR001357 -
Cla11g01556 1031 ProSiteProfiles BRCT domain profile. 624 711 IPR001357 -
Cla11g01556 1031 MobiDBLite consensus disorder prediction 578 608 - -
Cla11g01556 1031 CDD BRCT_TopBP1_rpt3 434 518 - -
Cla11g01556 1031 ProSiteProfiles BRCT domain profile. 166 250 IPR001357 -
Cla11g01556 1031 SUPERFAMILY BRCT domain 138 251 IPR036420 -
Cla11g01556 1031 SUPERFAMILY BRCT domain 628 713 IPR036420 -
Cla11g01556 1031 SUPERFAMILY BRCT domain 689 808 IPR036420 -
Cla11g01556 1031 SMART BRCT_7 437 517 IPR001357 -
Cla11g01556 1031 SMART BRCT_7 250 325 IPR001357 -
Cla11g01556 1031 SMART BRCT_7 721 797 IPR001357 -
Cla11g01556 1031 SMART BRCT_7 626 701 IPR001357 -
Cla11g01556 1031 SMART BRCT_7 163 240 IPR001357 -
Cla11g01556 1031 Gene3D BRCT domain 416 524 IPR036420 -
Cla11g01556 1031 MobiDBLite consensus disorder prediction 589 608 - -
Cla11g01556 1031 Pfam twin BRCT domain 169 232 IPR001357 -
Cla11g01556 1031 Pfam twin BRCT domain 257 317 IPR001357 -
Cla11g01556 1031 Pfam twin BRCT domain 728 789 IPR001357 -
Cla11g01556 1031 MobiDBLite consensus disorder prediction 955 993 - -
Cla11g01556 1031 CDD BRCT_TopBP1_rpt2_like 251 325 - -
Cla11g01556 1031 Gene3D BRCT domain 621 717 IPR036420 -
Cla11g01556 1031 SUPERFAMILY BRCT domain 251 336 IPR036420 -
Cla11g01556 1031 Gene3D BRCT domain 252 335 IPR036420 -
Cla11g01556 1031 SUPERFAMILY BRCT domain 437 521 IPR036420 -
Cla11g01556 1031 ProSiteProfiles BRCT domain profile. 724 807 IPR001357 -
Cla11g01556 1031 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 60 1019 - -
Cla11g01556 1031 Gene3D BRCT domain 164 251 IPR036420 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01556 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1 - csv:101212525 1684.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00978 Cla-Chr8:22455627 Cla11g01556 Cla-Chr11:29283771 6.26E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g215 . . . . . . . . . . . Cma09g00770 . . . Cpe06g00607 . . . . . . . . . . . . . . . . Cone7ag1503 . . Lsi04g02416 Csa04g01777 . . . . . . . . . . . . Cmo09g00762 . . . Car09g00680 . Cpe02g00570 Bhi09g02711 . . . . Mch11g0853 . Cla11g01556 Cam11g1620 Cec11g1647 Cco11g1648 Clacu11g1777 Cmu11g1593 Cre11g2011 . . Chy07g00604 Cme07g00814
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003479 1 4 1 1 1 0 2 1 0 4 1 1 1 1 1 2 1 1 2 1 7 1 1 1 2 1 1 1 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01556 Cla_Chr11 FPKM 8.708205 8.847689 14.296345 15.127884 8.649176 10.770998 9.168573 1.861638 1.693523 1.372129