Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01559 ATGGGAAGAGGGAAGATTGAAATAAAGAGAATAGAGAACTCAAGCAACAGACAAGTCACATATTCAAAGAGAAGAAATGGGATTATCAAGAAAGCCAAAGAAATTACTGTTCTTTGTGATGCTCAAGTTTCTCTTGTCATTTTTGCTAGCTCTGGAAAAATGCATGAGTATTGTAGCCCTTCTACACCTTTGATCGACATCTTGGATAAATATCACAAGCAATCTGGGAAGAGGCTGTGGGATGCTAAACATGAGAATCTGAGCAATGAAATGGATAGGGTTAAGAAAGAAAATGACAACATGCAGATTGAGCTCAGGCATTTGAGAGGAGAAGATATAACATCTTTGAACTACAAGGAGCTCATGGCGCTTGAAGAAGCTCTTGAAAATGGCCTCACTGGTGTTCGTGAGAAGCAGTCGGAGTTTATGAAAATGATGAGGACAAATGAAAGAATGATGGAAGAAGAGAACAAACGCCTGAACTATGAGCTGTACCAAAAGGAGATGGTAGCAATGGGAGATAGTGTGAGAGAAATGGATAATGGATATAATCAAAGAATGAGAGACTTCAATTCTCAGATGCCCTTTGCCTTCAGAGTTCAGCCTATTCAGCCAAATCTACAAGAAAGGAACAATTAA 639 39.12 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSPSTPLIDILDKYHKQSGKRLWDAKHENLSNEMDRVKKENDNMQIELRHLRGEDITSLNYKELMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELYQKEMVAMGDSVREMDNGYNQRMRDFNSQMPFAFRVQPIQPNLQERNN 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29321179 29325267 + ClCG11G016000.2 Cla11g01559 285381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01559 212 Pfam K-box region 82 163 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla11g01559 212 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cla11g01559 212 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla11g01559 212 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Cla11g01559 212 PANTHER FLORAL HOMEOTIC PROTEIN PISTILLATA 1 210 - -
Cla11g01559 212 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cla11g01559 212 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 210 - -
Cla11g01559 212 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Cla11g01559 212 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Cla11g01559 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cla11g01559 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cla11g01559 212 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cla11g01559 212 Coils Coil 77 111 - -
Cla11g01559 212 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cla11g01559 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01900 Cla-Chr5:30837316 Cla11g01559 Cla-Chr11:29321179 7.09E-43 dispersed
Cla05g02432 Cla-Chr5:35817899 Cla11g01559 Cla-Chr11:29321179 4.58E-17 dispersed
Cla11g01559 Cla-Chr11:29321179 Cla06g00195 Cla-Chr6:2321007 1.44E-35 dispersed
Cla11g01559 Cla-Chr11:29321179 Cla07g01523 Cla-Chr7:32406091 2.65E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62071 PF01486 K-box 1.20E-18 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01559 K09264 - csv:101222239 408.297