Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla11g01559 | ATGGGAAGAGGGAAGATTGAAATAAAGAGAATAGAGAACTCAAGCAACAGACAAGTCACATATTCAAAGAGAAGAAATGGGATTATCAAGAAAGCCAAAGAAATTACTGTTCTTTGTGATGCTCAAGTTTCTCTTGTCATTTTTGCTAGCTCTGGAAAAATGCATGAGTATTGTAGCCCTTCTACACCTTTGATCGACATCTTGGATAAATATCACAAGCAATCTGGGAAGAGGCTGTGGGATGCTAAACATGAGAATCTGAGCAATGAAATGGATAGGGTTAAGAAAGAAAATGACAACATGCAGATTGAGCTCAGGCATTTGAGAGGAGAAGATATAACATCTTTGAACTACAAGGAGCTCATGGCGCTTGAAGAAGCTCTTGAAAATGGCCTCACTGGTGTTCGTGAGAAGCAGTCGGAGTTTATGAAAATGATGAGGACAAATGAAAGAATGATGGAAGAAGAGAACAAACGCCTGAACTATGAGCTGTACCAAAAGGAGATGGTAGCAATGGGAGATAGTGTGAGAGAAATGGATAATGGATATAATCAAAGAATGAGAGACTTCAATTCTCAGATGCCCTTTGCCTTCAGAGTTCAGCCTATTCAGCCAAATCTACAAGAAAGGAACAATTAA | 639 | 39.12 | MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSPSTPLIDILDKYHKQSGKRLWDAKHENLSNEMDRVKKENDNMQIELRHLRGEDITSLNYKELMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELYQKEMVAMGDSVREMDNGYNQRMRDFNSQMPFAFRVQPIQPNLQERNN | 212 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 29321179 | 29325267 | + | ClCG11G016000.2 | Cla11g01559 | 285381 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla11g01559 | 212 | Pfam | K-box region | 82 | 163 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cla11g01559 | 212 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cla11g01559 | 212 | ProSiteProfiles | K-box domain profile. | 84 | 170 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cla11g01559 | 212 | SUPERFAMILY | SRF-like | 2 | 96 | IPR036879 | GO:0003677|GO:0046983 | |
Cla11g01559 | 212 | PANTHER | FLORAL HOMEOTIC PROTEIN PISTILLATA | 1 | 210 | - | - | |
Cla11g01559 | 212 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Cla11g01559 | 212 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 210 | - | - | |
Cla11g01559 | 212 | CDD | MADS_MEF2_like | 2 | 80 | IPR033896 | GO:0000977|GO:0045944 | |
Cla11g01559 | 212 | Gene3D | - | 13 | 100 | IPR036879 | GO:0003677|GO:0046983 | |
Cla11g01559 | 212 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Cla11g01559 | 212 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Cla11g01559 | 212 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Cla11g01559 | 212 | Coils | Coil | 77 | 111 | - | - | |
Cla11g01559 | 212 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Cla11g01559 | 212 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g01900 | Cla-Chr5:30837316 | Cla11g01559 | Cla-Chr11:29321179 | 7.09E-43 | dispersed | |
Cla05g02432 | Cla-Chr5:35817899 | Cla11g01559 | Cla-Chr11:29321179 | 4.58E-17 | dispersed | |
Cla11g01559 | Cla-Chr11:29321179 | Cla06g00195 | Cla-Chr6:2321007 | 1.44E-35 | dispersed | |
Cla11g01559 | Cla-Chr11:29321179 | Cla07g01523 | Cla-Chr7:32406091 | 2.65E-37 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
62071 | PF01486 | K-box | 1.20E-18 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla11g01559 | K09264 | - | csv:101222239 | 408.297 |