Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01560 ATGCAGTTATATCATCATCCATACTCTTTGGATAGCCAGAAGGTGAGACTTGCCTTGGAAGAGCAAGGCATTGATTACACATCGTATCATGTCAATCCCATCACGGCCAAGAACATGGACTCCTCATTCTTCAAGATCAACCCAAGTGCAAAACTTCCTGTCTTTCAAAATGGTTCCCACGTCATTTTCGACACAATCGAGATAATTCAGTATATAGAGAGAATTGCAGTTGTCTCCTCAGGGATCGATGACGTAATGCCGAGTAGCAGAGAAGTCATTGAATGGATGCATAAGATACAAGAATGGAATCCAAAATTTTTCACTCTTGCCCACATCCCCGAGAAGTACCGCCTTACTGTCACCAGATTTGTAAGGCGGGTGGTGATCGCTCGGATGGCTGAAACTCCCGAAATGGCTGCTGCTTACCATCGTAAGCTTAGAGAAGCATACGAAACTGAAGACAAATTGAAAAACAAAACTGTTGTCAAACAAAGCACTGAACATCTAGTTAGACTTCTTGATGAAATCGAATCGAAACTAGGCGAAACTTCTTACTTGGCAGGGGAAGAGTTTACCATGGCTGATGCAGTGTTCATTCCAGTGCTGGCTCGAATCGTGCTGTTGAAGCTGGCAGACGAGTATATAGGCAGCAGACCGAACATTGCAGAGTATTGGATCTTGGTGCAGCAGAGGCCAAGCTACAAGAAGGTAATTGGGAAGTATTTCAATGGATGGAGAAAGCACAAAACACTTCTGAAAACGTGGTGCTTTGTTCATATCAGAACCTTGCTGAGGAGATATTGA 804 43.66 MQLYHHPYSLDSQKVRLALEEQGIDYTSYHVNPITAKNMDSSFFKINPSAKLPVFQNGSHVIFDTIEIIQYIERIAVVSSGIDDVMPSSREVIEWMHKIQEWNPKFFTLAHIPEKYRLTVTRFVRRVVIARMAETPEMAAAYHRKLREAYETEDKLKNKTVVKQSTEHLVRLLDEIESKLGETSYLAGEEFTMADAVFIPVLARIVLLKLADEYIGSRPNIAEYWILVQQRPSYKKVIGKYFNGWRKHKTLLKTWCFVHIRTLLRRY 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29326605 29329959 - ClCG11G016010.1 Cla11g01560 285382

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01560 267 Gene3D Glutaredoxin 1 75 - -
Cla11g01560 267 SFLD Glutathione Transferase (cytosolic) 1 231 IPR040079 -
Cla11g01560 267 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 118 251 IPR010987 -
Cla11g01560 267 SUPERFAMILY Thioredoxin-like 1 74 IPR036249 -
Cla11g01560 267 CDD GST_N_family 1 73 - -
Cla11g01560 267 SUPERFAMILY GST C-terminal domain-like 136 241 IPR036282 -
Cla11g01560 267 Pfam Glutathione S-transferase, N-terminal domain 3 74 IPR004045 -
Cla11g01560 267 Gene3D - 117 238 - -
Cla11g01560 267 SFLD Main (cytGST) 1 231 - -
Cla11g01560 267 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 80 IPR004045 -
Cla11g01560 267 PANTHER GLUTATHIONE S-TRANSFERASE TCHQD 1 267 IPR044617 GO:0004364
Cla11g01560 267 Pfam Glutathione S-transferase, C-terminal domain 161 209 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01560 K22077 GDAP1; ganglioside-induced differentiation-associated protein 1 - csv:101222476 501.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00567 Cla-Chr9:5224630 Cla11g01560 Cla-Chr11:29326605 8.09E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g210 Blo01g01309 . Bda01g00677 . Bpe02g00628 . . Bma01g02091 . . Cma01g01364 Cma09g00767 . . . Cpe06g00604 . . . . . . . . . . . . . . . Cone4ag1434 Cone7ag1501 . . . Csa04g01774 . . . . . . . . . . . Cmo01g01417 Cmo09g00759 . . . Car09g00677 . Cpe02g00572 Bhi09g02716 . . . . . . Cla11g01560 Cam11g1625 Cec11g1651 . Clacu11g1781 Cmu11g1597 . . . Chy07g00602 Cme07g00806
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla09g00568 . 234 442 Glutathione S-transferase Gene Family AT4G02520 57.1 7.2e-64 240.7
Cla09g00567 . 1 220 Glutathione S-transferase Gene Family AT4G02520 51.6 2.3e-54 209.1
Cla09g00566 . 47 236 Glutathione S-transferase Gene Family AT4G02520 54.5 5.2e-54 208.0
Cla09g00568 . 234 443 Glutathione S-transferase Gene Family AT2G02930 57.3 2.1e-63 239.2
Cla09g00566 . 47 237 Glutathione S-transferase Gene Family AT2G02930 56.5 6.5e-57 217.6
Cla09g00567 . 1 221 Glutathione S-transferase Gene Family AT2G02930 52.2 2.1e-55 212.6
Cla09g00566 . 52 241 Glutathione S-transferase Gene Family AT1G02950 51.2 9.3e-50 194.1
Cla09g00568 . 234 443 Glutathione S-transferase Gene Family AT1G02930 54.8 2.5e-61 232.3
Cla09g00566 . 47 237 Glutathione S-transferase Gene Family AT1G02930 51.9 4.3e-53 204.9
Cla09g00568 . 234 443 Glutathione S-transferase Gene Family AT1G02920 55.2 2.3e-62 235.7
Cla09g00567 . 1 221 Glutathione S-transferase Gene Family AT1G02920 50.2 2.3e-54 209.1
Cla09g00566 . 47 237 Glutathione S-transferase Gene Family AT1G02920 54.0 3.0e-54 208.8
Cla09g00568 . 233 448 Glutathione S-transferase Gene Family AT2G47730 57.6 1.0e-67 253.8
Cla09g00567 . 1 225 Glutathione S-transferase Gene Family AT2G47730 51.8 2.8e-57 219.2
Cla09g00566 . 50 241 Glutathione S-transferase Gene Family AT2G47730 53.5 1.8e-56 216.5
Cla09g00568 . 1 208 Glutathione S-transferase Gene Family AT3G62760 58.2 7.4e-72 267.3
Cla04g00746 . 224 421 Glutathione S-transferase Gene Family AT3G09270 52.8 1.4e-57 219.9
Cla05g00265 . 2 213 Glutathione S-transferase Gene Family AT3G09270 50.9 1.4e-57 219.9
Cla07g01007 . 1 214 Glutathione S-transferase Gene Family AT1G78380 71.0 5.7e-88 320.9
Cla01g00840 . 4 221 Glutathione S-transferase Gene Family AT1G78380 56.0 1.5e-67 253.1
Cla07g01008 . 102 255 Glutathione S-transferase Gene Family AT1G78380 59.9 2.3e-49 192.6
Cla07g01007 . 7 214 Glutathione S-transferase Gene Family AT1G78370 65.4 5.6e-80 294.3
Cla01g00840 . 7 220 Glutathione S-transferase Gene Family AT1G78370 53.7 1.4e-62 236.5
Cla07g01008 . 103 242 Glutathione S-transferase Gene Family AT1G78370 55.7 2.3e-41 166.0
Cla07g01007 . 1 214 Glutathione S-transferase Gene Family AT1G78340 64.5 2.5e-80 295.4
Cla01g00840 . 4 218 Glutathione S-transferase Gene Family AT1G78340 53.5 6.3e-63 237.7
Cla07g01008 . 98 242 Glutathione S-transferase Gene Family AT1G78340 56.6 1.1e-43 173.7
Cla07g01007 . 1 216 Glutathione S-transferase Gene Family AT1G78320 53.7 6.8e-61 230.7
Cla07g01007 . 1 218 Glutathione S-transferase Gene Family AT1G17180 70.2 9.4e-91 330.1
Cla01g00840 . 4 224 Glutathione S-transferase Gene Family AT1G17180 54.8 4.3e-67 251.5
Cla07g01008 . 113 242 Glutathione S-transferase Gene Family AT1G17180 63.8 1.9e-46 183.0
Cla07g01007 . 2 217 Glutathione S-transferase Gene Family AT1G17190 58.8 1.9e-75 279.3
Cla07g01007 . 3 214 Glutathione S-transferase Gene Family AT3G43800 59.3 1.2e-72 270.0
Cla07g01007 . 1 218 Glutathione S-transferase Gene Family AT1G53680 58.3 6.4e-71 264.2
Cla01g00840 . 1 224 Glutathione S-transferase Gene Family AT1G53680 53.9 1.3e-63 240.0
Cla07g01008 . 115 243 Glutathione S-transferase Gene Family AT1G53680 58.0 1.3e-39 160.2
Cla02g00037 . 88 254 Glutathione S-transferase Gene Family AT2G02390 68.3 1.0e-61 233.4
Cla05g00238 . 712 875 Glutathione S-transferase Gene Family AT2G02390 51.5 6.8e-45 177.6
Cla02g00037 . 45 257 Glutathione S-transferase Gene Family AT2G02380 64.3 1.3e-76 283.1
Cla05g00238 . 669 874 Glutathione S-transferase Gene Family AT2G02380 53.1 1.4e-57 219.9
Cla07g00766 . 37 265 Glutathione S-transferase Gene Family AT5G41210 65.4 4.5e-86 314.7
Cla07g00766 . 37 265 Glutathione S-transferase Gene Family AT5G41240 63.7 6.6e-83 305.4
Cla02g01351 . 75 294 Glutathione S-transferase Gene Family AT5G02780 65.8 3.6e-80 295.0
Cla10g01965 . 392 610 Glutathione S-transferase Gene Family AT5G02780 64.4 9.2e-76 280.4
Cla02g01351 . 29 292 Glutathione S-transferase Gene Family AT3G55040 61.1 1.2e-85 313.5
Cla10g01965 . 384 610 Glutathione S-transferase Gene Family AT5G02790 65.5 7.7e-83 303.9
Cla02g01351 . 67 294 Glutathione S-transferase Gene Family AT5G02790 62.9 3.8e-82 301.6
Cla02g01324 . 3 261 Glutathione S-transferase Gene Family AT1G19570 54.2 7.2e-72 267.3
Cla05g01223 . 65 272 Glutathione S-transferase Gene Family AT1G19570 58.4 9.5e-72 266.9
Cla02g01324 . 3 260 Glutathione S-transferase Gene Family AT1G75270 57.9 8.8e-78 287.0
Cla05g01223 . 65 274 Glutathione S-transferase Gene Family AT1G75270 61.6 4.1e-75 278.1
Cla05g01223 . 9 271 Glutathione S-transferase Gene Family AT5G16710 68.3 1.4e-101 366.3
Cla11g01560 . 1 267 Glutathione S-transferase Gene Family AT1G77290 70.0 2.9e-110 395.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005962 2 5 1 1 1 0 2 0 0 1 1 1 2 1 1 2 0 1 2 0 1 1 1 1 1 1 1 1 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01560 Cla_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0