Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01561 ATGGCGGCAGCGGTCGGAGGAGGTAGTGGTAACGTCGGCGGTGGAGATGTGTCGAAGGCGCATGCGGCTATGGCTTTGGTGCAAGTAATCAATGGAGGTTATCATGTTATAACCAAAGTCGCCCTCAATGTTGGAATGAACCAGCTCGTTTTTTGTTTGTTCCGCGACTTGTTGGCTCTCGCGATTCTTTCCCCTGTCGCCTATGTTCGGGAGAAGCGGATTCGTTTGCCCATGACTCGAGACCTCCTCATATCGTTCTTCGTTCTTGGTTTAACTGGGATTTTTGGTAACCAGCTTCTCTTTCTCGTTGGACTTGGCTACACTAATCCAACTTATGCTGCTGCCATACAGCCTGCCATTCCAGTTTTTACATTCCTTTTTGCTGTTATGATGGGCACAGAGACTGTAAACTTACTCAAACTGGAAGGACAGGCAAAGGTTGGAGGTACCCTCGTTTGTGTCTCTGGTGCCATATTGATGGTTTTATTCCGTGGTCCAGCTTTGGTTGGAAGCACTGAATCTGATTTCATGTCACATAGCGAAATAAGTGCAAGGGGCCAGCCAGAGCCTGCTGGATGGTTAATGTCTAACTTTCTGGAGTATGGATTGGATCATTTTCATGTTGGGGTTTTATGCTTGATAGGAAACTGTATGTGCATGGCTGCTTTCTTGGCTATCCAGGCACGAGTGTTAAAGAAGTATCCTGCTAACTTATCGGTCACAGCATATTCTTATTTATTTGGTGCTATATTGATGGTGATCACATCCTTCTTTATGACCAACGAATCCACAGACTGGAATTTGACGCAATCAGAGTTTTTTGCTGTCCTTTATGCCGGAGTTTTTGCATCTGCGATCAACTATGGACTCTTGACATGGTGCAATAAAATATTAGGACCTGCATTGGTCGCTCTTTACAATCCACTTCAACCTGCAGCATCTGCGCTGCTATCAAGAGTTTTCATAGGAAGCCCTATTTATCTTGGAAGTGTTTTGGGGGGATCTCTTATAATTGCTGGTCTTTATTTGGTTACATGGGCGTCACATAGGGAACGACAAACGACTCCGGTTTTGCTACCGCATTCAACCAGGTCCTCCGAACCACTTATTCATAAAGATGCATTGACTAACAAGTTTGCATATCAGATAGGACACATTTTCTCAGGGTCTGCCTCATCACCCAAATCTGTAGATTAG 1197 44.95 MAAAVGGGSGNVGGGDVSKAHAAMALVQVINGGYHVITKVALNVGMNQLVFCLFRDLLALAILSPVAYVREKRIRLPMTRDLLISFFVLGLTGIFGNQLLFLVGLGYTNPTYAAAIQPAIPVFTFLFAVMMGTETVNLLKLEGQAKVGGTLVCVSGAILMVLFRGPALVGSTESDFMSHSEISARGQPEPAGWLMSNFLEYGLDHFHVGVLCLIGNCMCMAAFLAIQARVLKKYPANLSVTAYSYLFGAILMVITSFFMTNESTDWNLTQSEFFAVLYAGVFASAINYGLLTWCNKILGPALVALYNPLQPAASALLSRVFIGSPIYLGSVLGGSLIIAGLYLVTWASHRERQTTPVLLPHSTRSSEPLIHKDALTNKFAYQIGHIFSGSASSPKSVD 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29331612 29335545 - ClCG11G016020.2 Cla11g01561 285383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01561 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 55 163 - -
Cla11g01561 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 245 351 - -
Cla11g01561 398 PANTHER WAT1-RELATED PROTEIN 18 390 IPR030184 GO:0016021|GO:0022857
Cla11g01561 398 Pfam EamA-like transporter family 208 345 IPR000620 GO:0016020|GO:0016021
Cla11g01561 398 Pfam EamA-like transporter family 24 143 IPR000620 GO:0016020|GO:0016021
Cla11g01561 398 PANTHER WAT1-RELATED PROTEIN 18 390 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g01561 Cla-Chr11:29331612 Cla06g01441 Cla-Chr6:27986719 2.90E-63 dispersed
Cla11g01561 Cla-Chr11:29331612 Cla08g01451 Cla-Chr8:27419066 4.89E-75 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01561 - - csv:101222886 745.347