Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01584 ATGGGAAATCGAAGAAATATGAGGGCCTTATCTCCTCAAACGTTAATCGATAGGCTGGGAAAAAGCCACACACGCTCACAGCCCCATCTCCCTGAAGCCCACCATCAAATTTCTACCTTCTTTGCATTCACCACCATATGTTTTCAAAACATTCCTCATCCACTCCAACCTCTTCAACTTTCTTTCACTCACTCTCTTCTTCTGTTCGCTACAACTCTTCTATTTCAAACCCACAAACGCTCTTCAATGTCAACTAGCATGCTCCAACAGGTGAGGCAAGACCCTCATGCTAATTTTAGTTGGAAATATGCAAGGAACAGGAACAATGGCGTCTGTGGCTTCCTTGTTCAATTTGGGAGGTGTTGGAATGCTCCCAAGCCAGTATTGAAAGCTGCAGAGTCTAAGCCCCTTGTAGGTTTGAATAAAGTAACATGGGAATCACCGAGAACTAATGGGGATTCTAACAGTAACAGCAAATTGTTGGATGATGAAGAAGAAAGGAGCAAGGTGATTGAGTCTCTTGGAGAGGTATTGGAAAAGGCCGAAAAGCTAGAGACTCCGAAGTTGGGTAATAAGAGACCAGGAAGAGGTGTAGACAAGCCAACAACATCAAGCTCAAGCTCTACTTCGAAGCCAGTAAACTCGATGGCGAATCGAAAATCTAAAACTTTGAAAAGTGTTTGGCGCAAGGGAGATACAGTTGCATCGGTGCAGAAGATTGTAGCAGAGCCATCTAAGCCTAATGGGGAAGTTGAAGCTAAACCAGGGGGAGCTAGCAAGGTAGAGCCTCAATCACGTGCTGCTTTTCGACCCCCTCAACCACCTGTGAAACCACAACCAAAATTACAAGAAAAGCCTTTGGCTGCACCCCGACCTACATTAAAGAAACCAGTTGTCTTGAAGGATGTGGGGGCAGCAACTGTGACAGCAGATGATGAAACTAATACAGCAGCAAAGACAAAAGAGAGAAAGCCGATTCTGATTGACAAATATGCTTCAAAGAAACCTGTAGTTGATCCTTTTATTTCTGACGCTGTATTGGCCCCAACAAAACCTGGAAAAGCCCCTCCTCCTGGAAAGTTCAAGGACGATTACCGCAAGAAGAGTGTTGCATCAGGAGGTCCACGAAGGAGAATGGTCAATAACGATAAAGATGATGTCGAAATCCCTGATGATGTTTCCATTCCTAGTGTGACTACAGCACGAAAAGGAAGGAAATGGAGCAAGGCGAGCCGGAAGGCAGCAAGAATCCAGGCTTCCAAAGATGCTGCCCCTGTGAAAGTTGAAATTCTAGAAGTTGAAGAAAGTGGTATGTTGCTTGAGGAATTGGCATACAATTTGGCCATCAGTGAAGGTGAAATTCTTGGGTATTTATATTCAAAGGGGATTAAGCCTGATGGCGTGCAAACTTTAGATAAAGATATAGTGAAGATGATCTGCAAAGAGTATGATGTGGAGACCATAGACGTTGATCCGGTTAAAGTTGAAGAGTTCGCTAAAAAGAGGGATATTTTTGATGAAGAAGATCTGGATAAACTTCAAAGCAGGCCTCCAGTCATCACCATTATGGGACATGTTGACCATGGCAAGACTACACTTTTGGACTACATCCGCAGGAGCAAGGTAGCTGCATCAGAAGCTGGTGGGATTACTCAAGGAATTGGTGCTTATAGGGTGTTGGTACCACTTGATGGCAAGTTGCAGCCATGCGTGTTCCTTGATACTCCGGGGCATGAGGCGTTTGGAGCCATGAGAGCTCGTGGTGCTCGGGTGACAGACATTGCCATCATTGTGGTGGCTGCTGATGATGGAATCCGGCCTCAGACAAATGAGGCTATAGCTCATGCCAGAGCAGCTGGAGTACCAATAATTGACAAAGATGGTGCTAATGCAGATAGAGTGATGCAAGAACTTTCCTCTATCGGTCTAATGCCAGAGGACTGGGGCGGTGACATCCCCATGGTGCAGATTAGTGCTCTGAAAGGGCTGAATGTGGATGACCTGTTGGAAACAGTAATGCTTCTTGCTGAGTTGCAAGAATTGAAGGCTAATCCCGATAGAAGTGCAAAAGGGACCGTCATTGAGGCAGGTCTTGACAAATCAAAAGGACCATTTGCTACGTTTATTGTACAGAATGGAACCCTTAAAAGGGGAGACGTTGTAGTATGTGGGGAGGCCTTTGGGAAGGTTAGAGCTTTATTTGATGATGGCGGGAAACGAGTCGACGAAGTTGGACCTTCTTTACCAGTACAGGTCATTGGGTTAAATATTGTGCCAATTGCCGGTGATGTATTCGAGGTTGTTGATTCCCTTGATACTGCTCGTGAAAAGGCAGAGTTACGTGCCGAGGCCTTGCGGTCACAACGAATATCAGATAAGGCTGGAGATGGGAAGGTTACCCTTTCTTCTTTAGCTTCAGCAGTGTCATCAGGAAAGCAGGCTGGGTTAGACTTGCACCAACTGAACATAATTATGAAGGTCGATGTTCAGGGATCAATTGAGGCTATTAGACAAGCCCTTCAGGTGCTCCCGCGAGAAAATGTCTCTTTGAAGTTTCTTTTGCAAGCAACTGGCGATGTGAGCTCCAGTGATATTGATCTTGCAGTTGCAAGCAAAGCCATAATTTTAGGATTTAATGTTAAAGCACCAGGTTCTGTCAAAAGTTATGCGGAAAATAAAGGTGTCGAGATTAGGCTCTATAGAGTCATCTACGAGCTTATTGATGATGTGCGGAATGCAATGGAAGGACTCCTAGAACCTGTAGAGGAAAAAGTACCAATAGGGTCGGCAGAAGTCCGTGCAGTATTCAGTAGTGGCAGTGGTCTTGTTGCTGGATGCATGGTAGTAGAAGGAAAGCTGGTAAAGGGCTGTGGCATTCAAGTTCTGCGGAAGGGTAAAACGGTGTATAATGGTCAACTTGATTCACTGCGACGAGTCAAAGAAATCGTGAAAGAGGTAAATGCTGGCTTAGAGTGTGGAGTTGGAATGGAGGATTACAATGATTGGGAGGTGGGGGATGTAATAGAGGCCTTTGACACCATTATGAAGAAGCGGACGCTAGAAGAGGCCTCGGCTTCAATGACAGCTGCACTGGAGGAAGCTGGAATTGACTTGTAG 3117 45.4 MGNRRNMRALSPQTLIDRLGKSHTRSQPHLPEAHHQISTFFAFTTICFQNIPHPLQPLQLSFTHSLLLFATTLLFQTHKRSSMSTSMLQQVRQDPHANFSWKYARNRNNGVCGFLVQFGRCWNAPKPVLKAAESKPLVGLNKVTWESPRTNGDSNSNSKLLDDEEERSKVIESLGEVLEKAEKLETPKLGNKRPGRGVDKPTTSSSSSTSKPVNSMANRKSKTLKSVWRKGDTVASVQKIVAEPSKPNGEVEAKPGGASKVEPQSRAAFRPPQPPVKPQPKLQEKPLAAPRPTLKKPVVLKDVGAATVTADDETNTAAKTKERKPILIDKYASKKPVVDPFISDAVLAPTKPGKAPPPGKFKDDYRKKSVASGGPRRRMVNNDKDDVEIPDDVSIPSVTTARKGRKWSKASRKAARIQASKDAAPVKVEILEVEESGMLLEELAYNLAISEGEILGYLYSKGIKPDGVQTLDKDIVKMICKEYDVETIDVDPVKVEEFAKKRDIFDEEDLDKLQSRPPVITIMGHVDHGKTTLLDYIRRSKVAASEAGGITQGIGAYRVLVPLDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAIIVVAADDGIRPQTNEAIAHARAAGVPIIDKDGANADRVMQELSSIGLMPEDWGGDIPMVQISALKGLNVDDLLETVMLLAELQELKANPDRSAKGTVIEAGLDKSKGPFATFIVQNGTLKRGDVVVCGEAFGKVRALFDDGGKRVDEVGPSLPVQVIGLNIVPIAGDVFEVVDSLDTAREKAELRAEALRSQRISDKAGDGKVTLSSLASAVSSGKQAGLDLHQLNIIMKVDVQGSIEAIRQALQVLPRENVSLKFLLQATGDVSSSDIDLAVASKAIILGFNVKAPGSVKSYAENKGVEIRLYRVIYELIDDVRNAMEGLLEPVEEKVPIGSAEVRAVFSSGSGLVAGCMVVEGKLVKGCGIQVLRKGKTVYNGQLDSLRRVKEIVKEVNAGLECGVGMEDYNDWEVGDVIEAFDTIMKKRTLEEASASMTAALEEAGIDL 1038
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29541339 29549268 + ClCG11G016260.1 Cla11g01584 285406

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01584 1038 Gene3D - 817 922 IPR036925 -
Cla11g01584 1038 Gene3D Translation factors 923 1019 - -
Cla11g01584 1038 Pfam Translation initiation factor IF-2, N-terminal region 440 486 IPR006847 -
Cla11g01584 1038 MobiDBLite consensus disorder prediction 347 388 - -
Cla11g01584 1038 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 515 682 IPR000795 GO:0003924|GO:0005525
Cla11g01584 1038 TIGRFAM small_GTP: small GTP-binding protein domain 517 672 IPR005225 GO:0005525
Cla11g01584 1038 ProSitePatterns Initiation factor 2 signature. 971 993 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Cla11g01584 1038 Gene3D Translation factors 685 800 - -
Cla11g01584 1038 MobiDBLite consensus disorder prediction 144 166 - -
Cla11g01584 1038 Pfam Elongation factor Tu GTP binding domain 520 675 IPR000795 GO:0003924|GO:0005525
Cla11g01584 1038 CDD IF2_mtIF2_II 689 783 IPR044145 -
Cla11g01584 1038 Hamap Translation initiation factor IF-2 [infB]. 6 1018 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Cla11g01584 1038 MobiDBLite consensus disorder prediction 357 371 - -
Cla11g01584 1038 PRINTS GTP-binding elongation factor signature 587 598 IPR000795 GO:0003924|GO:0005525
Cla11g01584 1038 PRINTS GTP-binding elongation factor signature 519 532 IPR000795 GO:0003924|GO:0005525
Cla11g01584 1038 PRINTS GTP-binding elongation factor signature 571 581 IPR000795 GO:0003924|GO:0005525
Cla11g01584 1038 CDD mtIF2_IVc 928 1010 - -
Cla11g01584 1038 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 507 685 IPR027417 -
Cla11g01584 1038 MobiDBLite consensus disorder prediction 198 222 - -
Cla11g01584 1038 TIGRFAM IF-2: translation initiation factor IF-2 438 1020 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Cla11g01584 1038 Coils Coil 768 788 - -
Cla11g01584 1038 PANTHER TRANSLATION INITIATION FACTOR IF-2, CHLOROPLASTIC 128 1028 - -
Cla11g01584 1038 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 128 1028 IPR015760 -
Cla11g01584 1038 SUPERFAMILY Translation proteins 924 1018 IPR009000 -
Cla11g01584 1038 SUPERFAMILY Translation proteins 685 768 IPR009000 -
Cla11g01584 1038 MobiDBLite consensus disorder prediction 182 296 - -
Cla11g01584 1038 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 816 928 IPR036925 -
Cla11g01584 1038 CDD IF2_eIF5B 518 678 - -
Cla11g01584 1038 Gene3D - 512 684 IPR027417 -
Cla11g01584 1038 Pfam Translation-initiation factor 2 815 910 IPR023115 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01584 K02519 infB, MTIF2; translation initiation factor IF-2 - csv:101216442 1621.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01405 Cla-Chr7:31238421 Cla11g01584 Cla-Chr11:29541339 2.93E-120 dispersed
Cla09g00902 Cla-Chr9:9337543 Cla11g01584 Cla-Chr11:29541339 6.72E-19 dispersed
Cla11g01584 Cla-Chr11:29541339 Cla04g00330 Cla-Chr4:11421572 4.68E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g959 . . . . . . . . . . . . . . . . . . . . . . . . Cla11g01584 Cam11g1651 Cec11g1679 Cco11g1676 Clacu11g1808 Cmu11g1622 Cre11g2038 . . . . Lsi04g01862 . . Cme07g00769 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00885 Cme01g01542
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004219 3 2 2 2 2 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 5 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01584 Cla_Chr11 FPKM 14.744328 16.569756 26.025379 26.502907 10.301767 10.90584 9.218411 20.897011 20.435291 19.637209