Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01587 ATGGATTTCGTTTCGAATTCACTGGCTTGCAAGACTCTCCCTTGCCGGACTCTGTTTCCGCCGTGCGCAACATCTTCTCGCCGCCGCCAATGGTTGCCTTCTTCACTCTTCAATGCAGGCAAGCGAGTCAGAGAGCTTCGCTGCGAGTTCGAAGTGAACGTTAATGGCGCTCTTTCCAGCGACTTCGACCCTCGTTCCGTTGACAGGGTTGCTTTACTAGCAGTTATTAGTTTCTCAGATATTGCAATTTTTGTGTCATCCCAGAAAAAAGCATTGGAGGCAGCAATGAATGAAATAAATAGCTCATTTGGGAAAGGAAGTGTTACACGACTTGGAAGTGCTGGTGGAGCATTAGTGGAAACTTTCCCAAGTGGCTGTTTGACTTTAGATTGTGCCTTAGGTGGTGGCCTTCCTAAAGGCAGAATTGTCGAGATATTTGGACCAGAAAGTAGTGGAAAGACCACCCTAGCATTGCATGCAATTGCAGAAGTACAGAAACTAGGAGGAAATGCGATGCTTGTAGATGCAGAGCATGCCTTTGATCCAGCATATTCTAAAGCTGTAGGAGTGGATGTAGAAAATTTAATTGTATGCCAACCTGATCATGGAGAGATGGCACTTGAGATTGCAGATCGCATGTGTAGATCTGGTGCTGTAGATCTCATTTGTGTTGATTCTGTCTCTGCTCTTACACCAAGAGCAGAAATCGAAGGTGAGATCGGTATGCAGCAAATGGGTTTGCAAGCACGCCTCATGAGTCAAGCTCTTCGTAAAATGTCTGGAAATGCCTCAAAAGCTGGTTGTACTCTCATATTTTTGAATCAAATACGATATAAGATTGGTGTGTATTATGGAAATCCAGAAGTGACGAGTGGAGGGATTGCACTGAAGTTCTTTGCCTCACTTCGACTTGAAATACGTCCTATTGGGAAGCTAAAGTCTGCTAAAGGAGATGAAGAAATTGGGATTCGAGTTCGTGTTAGAGTCCAAAAGAGCAAGTTTGGTTACCTTTTATCTTTCAATACATTTGGTCTGAGAATGTGTTCCAGGCAACAGAGGCGAGAGTCCCATGAAGAGATCGCTGACAATTGTGGATTCGGAGAGATGAAGACTTGGGAAAGAAGACATCAATGCAAGTTGAATGGAGACGAACACTTGGATATGAGGCTTGTTTTTGGTTGTCACATGCATTTGGTGCAGAATGAAGAAAGAAGCCTTGTTTGTTGTTTCCCATGGGCTTCGATGAACACCATGTCACCACCACTCACCATTGATCTTCAGCAGTCCGCACCCATCAATGTGCTGAGTATAAGCACATTTGGGTTCAATCAATCTCCTCGCTCTACCTGGGAGACCTTTGATATTCCTGGAGATGGACCTTGGGTGTCGAGGCCATACAAGCAAGCTGAATTTGAAATTATCTTTGGAGAGGGAGTAGGTAAACTGGTCAGTATTCTAGGAGGTTGCATTTTAGATTGTGCTGAAATTATGGACATTGTAGTGAAAAAGGGCTCGTGGTACAGTTACGGGGATCACAGGTTGGGGCAAGGAAGAGACAGAGCTCTGCAATACTTAAAAGATAATCCTGCTCTTCAAGATGAAATTGAGAAGGCTGTGCAGACCATGCTGACAAGTGGAACTGTTCAAATGGGATTTCAATCTATTAGAAAGCCATTGCCGAACCAAGAAGAGGTACTTGAAGAGCTCGAATAA 1713 44.19 MDFVSNSLACKTLPCRTLFPPCATSSRRRQWLPSSLFNAGKRVRELRCEFEVNVNGALSSDFDPRSVDRVALLAVISFSDIAIFVSSQKKALEAAMNEINSSFGKGSVTRLGSAGGALVETFPSGCLTLDCALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKAVGVDVENLIVCQPDHGEMALEIADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASLRLEIRPIGKLKSAKGDEEIGIRVRVRVQKSKFGYLLSFNTFGLRMCSRQQRRESHEEIADNCGFGEMKTWERRHQCKLNGDEHLDMRLVFGCHMHLVQNEERSLVCCFPWASMNTMSPPLTIDLQQSAPINVLSISTFGFNQSPRSTWETFDIPGDGPWVSRPYKQAEFEIIFGEGVGKLVSILGGCILDCAEIMDIVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKAVQTMLTSGTVQMGFQSIRKPLPNQEEVLEELE 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29559656 29566351 - ClCG11G016290.2 Cla11g01587 285409

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01587 570 PANTHER RECA 87 563 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cla11g01587 570 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 336 IPR027417 -
Cla11g01587 570 PRINTS RecA protein signature 175 204 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cla11g01587 570 PRINTS RecA protein signature 292 320 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cla11g01587 570 PRINTS RecA protein signature 514 531 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cla11g01587 570 PRINTS RecA protein signature 455 484 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cla11g01587 570 PRINTS RecA protein signature 209 238 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cla11g01587 570 PRINTS RecA protein signature 247 276 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cla11g01587 570 CDD recA 89 543 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cla11g01587 570 ProSiteProfiles RecA family profile 2. 281 333 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Cla11g01587 570 PANTHER MITOCHONDRIAL DNA REPAIR PROTEIN RECA HOMOLOG 87 563 - -
Cla11g01587 570 ProSitePatterns recA signature. 295 303 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Cla11g01587 570 TIGRFAM tigrfam_recA: protein RecA 88 334 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cla11g01587 570 ProSiteProfiles RecA family profile 1. 118 276 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Cla11g01587 570 SMART AAA_5 139 310 IPR003593 -
Cla11g01587 570 Gene3D - 487 543 - -
Cla11g01587 570 Pfam recA bacterial DNA recombination protein 90 335 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cla11g01587 570 Gene3D - 117 347 IPR027417 -
Cla11g01587 570 SUPERFAMILY RecA protein, C-terminal domain 488 541 IPR023400 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01587 K03553 recA; recombination protein RecA - csv:101216994 578.941
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g00156 Cla-Chr11:1857490 Cla11g01587 Cla-Chr11:29559656 1.90E-74 dispersed
Cla11g01587 Cla-Chr11:29559656 Cla03g01487 Cla-Chr3:30380979 1.83E-69 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g966 . . . . . . . . . . . . . . . . . . . . . . . . Cla11g01587 Cam11g1654 Cec11g1682 Cco11g1679 Clacu11g1811 Cmu11g1625 Cre11g2041 Cone6ag0287 Cone9ag0322 . . Lsi04g01865 . . Cme07g00767 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009642 1 2 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 2 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01587 Cla_Chr11 FPKM 8.901496 9.181975 9.121174 9.090011 12.980742 13.476695 13.404879 14.152928 15.493134 15.80677