Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01589 ATGGCTACTAGTTTTCGCGGCAATGGTAGTAGCAGTTGCAAGTACAAGTGCGACACTGCTGCCAATACTTTGCAATGGATAAAGGCCATCGTCGATTTTATCAAACCTTACTCGTTCTTGATCAATGCTCCCGTCGTCAATTTCTTCAAGGACAGCCTATGGGAAGCTGTTGATGAGGAATGGATGGAGTGCTTGCGCAAGGAACCTGTGGAAAATCTGCTCCTAATTCCTTCTGGAGTCGTCCAGGAAAATTGGCCAAATTCGCTAAAGAAATTTATTGGTACTTTAAGATCTCTTGCCTTTCAACGTGAACAAGCTGACTTGCAGATGGTAGGACTTTCATCTTTCTATGCATTGTTCCTTTTGAAGGCTTTTGTTCTACCTGGTTGGTGCATGGCTTCACTTAACACGGTTCTTTCTCAAGGCATGAATCAGAAGAAAAAACATGAAGTTAAAGTCCTTTCTGCCATTATTAGTTTGATTGCAAGTGACCTGAAAAGTCGTGCAATTGTCGATGTTGGTGCTGGTCAGGGTTATTTAGCACAAGTGCTCTCCTTCCATTACAAGCATTCAGTTCTTGCAATAGATGCTTGTTCCCATCATGGAAATGTGACAAGTGCACGCTCAACACGAATTAAGAAGTATTACTTAGCTCAAATTCGTAAATCTGGGTTGGAGGCCAAAAATTTGAGACTGCCGAAGGCTATGACATTTCATGTGTTGTCCGTTGATGCATTAAAATCCCTTGCTAACATGTCACTACAAGAGGATCATGTTGAGAAGACAAGTATGACCGGTGATGATCAAGAGAAAACCAATCTGCAGGAGTCAAAGTGTTTGACTTTGGGCAATGCAGACGAAGAGCCTTCACTGGTTCTTGCTGGTCTTCATGCTTGTGGTGATCTTTCGGTGATAATGCTTAGGACTTTTGTAGAGTGCAAGGAAGTAAAAGCAGTCATTAATATTGGTTGCTGTTACAACCTTCTCACGGAGTATGAATCTGACAATGAAGATGTCCAAAATGGATTTCCAATGAGCTTGGGTGTCAAATCTTCTGGCTTGTCTCTGGGGAAAAGTGGCAGAGACCTTGCATGTCAGAGCGCAGAAAGATGGAGGAATTTGGAAAATGAGGGTGGTCTTCATAATTTTGAGTTGCATGCTTTCCGTGCTGCTTTCCAAATGGTACTCTATAAATATTATCCAGAAGTGGTTGCAACTTGCCCATCTGTTGGGCGTCAAGGAAAGGCATTGCGTCGTCGCAAGAAAAGGGAGGGTACAGTATCCTTGCAGTGTCATGAAGATAAGCTTGAGGCATCACAATCAGATCTTATTGGGGGGTTGCCAGTCAACAACAATGCCTTTTCTCATACCATTTTGGAGCATGGGAGTACGCCATGTGAACAGTCCAAACCTGTTGACAAATATCCTCTTTTTGAAAAGTTTTGTCAATCTGGATTAAATCGCCTTGGCCTTCAATCTTTGCAGGATATGGATTATTATGGAATCTGGATGGACACTGAGCCTTTTACTGAACTTATTGGACCTTACTGGTCTCTTCGAGCTGCTCTGGGTCCGGTATTGGAAACGTGTATTCTGCTTGACAGATTACTATTTCTCCAGGAGCAAGGTGGATGCCTTGAAGCTATGATGCTACCTATCTTTGACCCGAATTTATCTCCGAGGAATGTGGCTATAATCGCTAGGAAAGTTGGTGCAACATAA 1722 42.8 MATSFRGNGSSSCKYKCDTAANTLQWIKAIVDFIKPYSFLINAPVVNFFKDSLWEAVDEEWMECLRKEPVENLLLIPSGVVQENWPNSLKKFIGTLRSLAFQREQADLQMVGLSSFYALFLLKAFVLPGWCMASLNTVLSQGMNQKKKHEVKVLSAIISLIASDLKSRAIVDVGAGQGYLAQVLSFHYKHSVLAIDACSHHGNVTSARSTRIKKYYLAQIRKSGLEAKNLRLPKAMTFHVLSVDALKSLANMSLQEDHVEKTSMTGDDQEKTNLQESKCLTLGNADEEPSLVLAGLHACGDLSVIMLRTFVECKEVKAVINIGCCYNLLTEYESDNEDVQNGFPMSLGVKSSGLSLGKSGRDLACQSAERWRNLENEGGLHNFELHAFRAAFQMVLYKYYPEVVATCPSVGRQGKALRRRKKREGTVSLQCHEDKLEASQSDLIGGLPVNNNAFSHTILEHGSTPCEQSKPVDKYPLFEKFCQSGLNRLGLQSLQDMDYYGIWMDTEPFTELIGPYWSLRAALGPVLETCILLDRLLFLQEQGGCLEAMMLPIFDPNLSPRNVAIIARKVGAT 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29578833 29591193 - ClCG11G016310.1 Cla11g01589 285411

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01589 573 PANTHER CGI-41 METHYLTRANSFERASE 10 569 - -
Cla11g01589 573 Pfam Methyltransferase domain 146 331 IPR025714 -
Cla11g01589 573 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASES SUPERFAMILY PROTEIN 10 569 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01589 - - - bhj:120087081 1018.45
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g969 . . . . . . . . . . . Cma09g00747 . Car09g00655 . . . . . . . . . . Cla11g01589 Cam11g1656 Cec11g1684 Cco11g1681 Clacu11g1813 Cmu11g1627 Cre11g2043 Cone6ag0286 Cone9ag0321 . . Lsi04g01868 . . Cme07g00762 . . . . . . . . . . Cmo09g00739 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003084 1 15 1 1 1 0 2 0 0 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 3 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01589 Cla_Chr11 FPKM 45.03817 48.853123 30.967291 31.638788 29.481993 25.809486 34.650394 62.422169 80.942055 75.906563