Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01598 ATGGCCAGAACAGTGTGCTCTCACATCATTCCATCTCTTCTTCTCCCTTCAAAATCCTCCTTCTTCGGAACTCACTCTCTCTTCTCCAGAGCTTCTCATTTCAACCATGTTATGGTGGTTGGCCGACGCTTCTCTTCTGCATCCAAGATCAGCATGAGCCTCAGAGCCGGTATTGTTGGCCTCCCCAATGTTGGAAAATCTACTCTCTTCAATGCCGTCGTCGAAAATGGCAAGGCTCAAGCTGCCAACTTTCCTTTCTGTACAATAGAGCCAAATGTAGGAGTAGTTGCAGTTCCAGATCCTCGTCTCCATAAACTTTCTGATCTCAGCAAGTCTCAACGAGCGGTTCCAGCATCAATAGAGTTTGTAGATATTGCTGGGTTAGTGAAAGGAGCCAGTCAGGGAGAGGGACTGGGAAATAAATTTTTATCCCATATTCGTGAGGTGGACTCAATACTTCAGGTTGTGCGCTGTTTTGAGGATAATGACATTGTTCACGTGAATGGGAAAATTGATCCAAAAACTGATATTGACGTGATTAACTTAGAGCTTGTTTTTTCAGATCTGGACCAGATTGAGAAAAGATTAGAGAAGCTCAAGAAAGGCAAGGCAAAGGATTCTCAGTCTAAAGTTAAGGAAGAAGCAGAGAAGTCTGCATTGGAAAAAATTCAGAAGGTCCTTCTGGATGGAAAACCAGCGCGATCAGCAACTTTAACAGATTTTGAAAAGGATGCTATAAAGCATCTTTGTCTGCTCACAATGAAACCGGTCATATATGTTGCCAATGTCGCAGAATCTGATATAGCGGAGCCTGCAAGTAATCCTCATGTTAAAGAAGTTATGGGTCTTGCATCAGAGTTGCAATCTGGAATAGTGACAGTTTCTGCACAGGTTGAGTCTGAGCTTTCTGAACTTCCGTCAGAAGAGAGGTTTGAATATTTAAAATCTCTTGGTGTAAGTGAAAGTGGCCTGGGAAATCTTATAAGGGCAACCTATAACCTATTGGGGCTCCGTACATATTTTACTTCGGGTGAAAAGGAAACAAAAGCCTGGACCATACTTACAGGAATGACTGCACCACAAGCTGCTGGAGTCATTCACTCAGACTTTGAGAGAGGGTTCATCCGTGCTGAGACGGTGGCTTATGATGATTTTGTTGCTGCGGGTTCATTTGCAGCAGCAAGGGAGAAAGGACTTTTGAGAGCTGAGGGTAAAGAATATATTGTCCAGGAAGGGGATGTCATGCTCTTTCGTTTCAATGTCTAG 1266 43.52 MARTVCSHIIPSLLLPSKSSFFGTHSLFSRASHFNHVMVVGRRFSSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGVVAVPDPRLHKLSDLSKSQRAVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKIDPKTDIDVINLELVFSDLDQIEKRLEKLKKGKAKDSQSKVKEEAEKSALEKIQKVLLDGKPARSATLTDFEKDAIKHLCLLTMKPVIYVANVAESDIAEPASNPHVKEVMGLASELQSGIVTVSAQVESELSELPSEERFEYLKSLGVSESGLGNLIRATYNLLGLRTYFTSGEKETKAWTILTGMTAPQAAGVIHSDFERGFIRAETVAYDDFVAAGSFAAAREKGLLRAEGKEYIVQEGDVMLFRFNV 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29650796 29659836 + ClCG11G016400.1 Cla11g01598 285420

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01598 421 SUPERFAMILY TGS-like 337 418 IPR012676 -
Cla11g01598 421 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 359 IPR027417 -
Cla11g01598 421 Coils Coil 182 209 - -
Cla11g01598 421 Gene3D - 165 255 IPR023192 -
Cla11g01598 421 Pfam Protein of unknown function (DUF933) 337 420 IPR013029 -
Cla11g01598 421 CDD YchF 56 335 IPR041706 -
Cla11g01598 421 TIGRFAM TIGR00092: GTP-binding protein YchF 52 421 IPR004396 GO:0005524|GO:0005525|GO:0016887
Cla11g01598 421 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 54 336 IPR031167 GO:0005525
Cla11g01598 421 PRINTS GTP1/OBG GTP-binding protein family signature 56 76 IPR006073 GO:0005525
Cla11g01598 421 PRINTS GTP1/OBG GTP-binding protein family signature 78 96 IPR006073 GO:0005525
Cla11g01598 421 PRINTS GTP1/OBG GTP-binding protein family signature 122 137 IPR006073 GO:0005525
Cla11g01598 421 PRINTS GTP1/OBG GTP-binding protein family signature 139 157 IPR006073 GO:0005525
Cla11g01598 421 Pfam 50S ribosome-binding GTPase 56 168 IPR006073 GO:0005525
Cla11g01598 421 Gene3D - 54 336 IPR027417 -
Cla11g01598 421 PANTHER OBG GTPASE FAMILY 52 421 - -
Cla11g01598 421 CDD TGS_YchF_OLA1 335 419 IPR013029 -
Cla11g01598 421 Gene3D - 100 420 IPR012675 -
Cla11g01598 421 Hamap Ribosome-binding ATPase YchF [ychF]. 53 421 IPR004396 GO:0005524|GO:0005525|GO:0016887
Cla11g01598 421 PANTHER OBG-LIKE ATPASE 1 52 421 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01598 K19788 OLA1; obg-like ATPase 1 - csv:101217443 768.074
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00582 Cla-Chr3:6578481 Cla11g01598 Cla-Chr11:29650796 1.10E-17 dispersed
Cla07g01331 Cla-Chr7:30545956 Cla11g01598 Cla-Chr11:29650796 2.84E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g990 . . . . . . . . . . Cma01g01304 Cma09g00739 Car01g01111 Car09g00649 . . Cpe02g00628 . . . . . . . Cla11g01598 Cam11g1664 Cec11g1693 Cco11g1689 Clacu11g1822 Cmu11g1634 Cre11g2050 Cone6ag0279 Cone9ag0315 . . Lsi04g01876 . . Cme07g00745 . . . . . . . . . Cmo01g01359 Cmo09g00731 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004300 2 4 0 0 1 0 1 0 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 7 4 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01598 Cla_Chr11 FPKM 16.185593 16.902599 4.640361 6.143505 31.994617 29.596338 36.573601 2.669419 1.622158 2.709353