Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01623 ATGACGTCAACTGTTGATGAAGATGATAGGGAGCCAGCCATGGAGTCTGGTGAATCCGATGAAGGAAAAGTTGTTCGAGAAGTCTGTGCAAATGGGGTCTGCATTAAAACAACAGAAGTAGAAGCAAAGCTCGATGAGGGAAATATCCAAGAGGCAGAATCGTCACTACGGGAAGGGTTATCTCTCAATTTTGAGGAAGCCAGAGCCCTTCTTGGGAAGTTGGAATATCAGAGAGGTAATGTTGAAGGTGCTCTACGTGTGTTTGATGGCATTGATCTCCAAGCAGCTATTCAACGATTACAGCCTTGCGTTACTGAGAAGACGCCTCCAAAAAAAGGACGTGCTCGCTCTGAATCTCAACATGCAGTTTCGCAGCATGCTGCAAACCTTGTTCTTGAAGCCATATATTTAAAAGTGAAGTCTCTTCAGAAGCTAGGGAGAGTAACTGAGGCTGCTGATGAGTGTACTAGTGTACTTGATGCTGTAGAGAAGATATTCCACCAAGGAATTCCTGATGGGCAAGTGGATAGTAGATTGCAAGATACTGTCAGTCAGGCTGTAGAACTCCTCCCTGAGCTATGGAAGCAGGCTGGCTGTTTCCAGGAAGCAATATCTGCCTATAGACGTGCCCTCCTAAGCCAATGGAACCTCAATAATGAAACCTGTGCTAGGATCCAGAAAGGATTTGCTGTATTTTTGCTTTACAGTGGAGTAGAGGCTGGTCCTCCTAGTTTAGCTGTTCAACTTGAAGGTTCATATGTACCAAAAAATAATTTGGAAGAAGCAATTCTACTTTTGATGGTTCTTGTGAAGAAATGTTACCTTGGTAAGATAAAATGGGATCCATCAGTGATGGAGCACCTAATATTTGCTCTATCCTTATGTAGTCAGACATCTGTTTTAGCAAAACAACTTGAAGAGGTCATGCCTGGAGTATATCACCGTGTAGATCGTTGGAAGTCTTTATCTCTTTGTTATTTTGCAGCAGGTCAGAATAAAGTTGCCTTAAATCTTCTGAGAAAGTCTCTACACAAACACGAGCAACCAGATGATGTGGCAGCCTTATTATTGGCTGCCAAGATCTGTAGTGAGGATCCTTATCTCGCGGCTGAAGGTGTTGGTTATGCCCAGCGGGCAATGAACAATTCCATAGAAAATGAAGAGCATTTAAAGGGTGTGGGTCTTCGTTTGTTAGGTCTTTGTTTGGGAAAACAAGCCAAAATGGCTTCCTCTGACTTTGAGAGGTCCCGTCTTCAGTCAGAGGCATTGAAATCTCTTGAGGCAGCAAGTGGTCTGGAGAGCAATAACTTAGATTTGATGCTTGAGTTAGGAGTACAATATTCAGAATATCGGAATTTGAATGCTGCTCTGCAATATGCAAAGAAGTTTATTGATGAAACTGGTGGTTCTGTCTTAAAAGGCTGGCAGTTGCTTGCTCTTGTTTTGTCTGCCCAAAAGAGATTTTCAGAGGCTGAAGTGGTTACTGATGCTGCAATGGATGAGACCACAAAATGGGAACAGGGACCACTTCTCAGACTCAAGGCAAAGCTGAAGGTCTCTCAATCATTACATATGGATGCTATTGAAACTTATCGTTATCTCCTTGCATTAGTTCAAGCGCAAAAGAAATCGTTTGGGCCTCTCCGAATTGTCCCTCAGGTTGAAGATGATAAAGTGAATGAATTTGAAGTGTGGAATGGTCTAGCCAATTTATACTCCAGCCTTTCACATTGGAAAGATGCAGAGATATGTCTAGGAAAAGCAAGAGAGCTGAAGGAGTTCTCCCCAGAAGTACTACATACTGAAGGTCTAATGTGTGAAGGACGTGAGAAAATACAAGAAGCTCTAGCTGCTTACATTAATGCTCTCCTACTCGAACCGTCTTATGTTCCTTGCAAGGTTTTGATTGGTGCTCTTTGGTCGAAAGCGGGCCCAGATGCATTGCCTATAGCGAGAAGCTTACTTTCAGACGCATTGAGATTAGATCCTACCAACCGTAAGGCTTGGTTTTACTTAGGGGTCATTCATAGGGATGAAGGACGAATGGCCGATGCCATAGACTGTTTCCAGGCAGCCGCCATGCTTGAAGAATCAGATCCCATTGAAAGCTTCAGCAGTATTCTCTAG 2127 43.3 MTSTVDEDDREPAMESGESDEGKVVREVCANGVCIKTTEVEAKLDEGNIQEAESSLREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPCVTEKTPPKKGRARSESQHAVSQHAANLVLEAIYLKVKSLQKLGRVTEAADECTSVLDAVEKIFHQGIPDGQVDSRLQDTVSQAVELLPELWKQAGCFQEAISAYRRALLSQWNLNNETCARIQKGFAVFLLYSGVEAGPPSLAVQLEGSYVPKNNLEEAILLLMVLVKKCYLGKIKWDPSVMEHLIFALSLCSQTSVLAKQLEEVMPGVYHRVDRWKSLSLCYFAAGQNKVALNLLRKSLHKHEQPDDVAALLLAAKICSEDPYLAAEGVGYAQRAMNNSIENEEHLKGVGLRLLGLCLGKQAKMASSDFERSRLQSEALKSLEAASGLESNNLDLMLELGVQYSEYRNLNAALQYAKKFIDETGGSVLKGWQLLALVLSAQKRFSEAEVVTDAAMDETTKWEQGPLLRLKAKLKVSQSLHMDAIETYRYLLALVQAQKKSFGPLRIVPQVEDDKVNEFEVWNGLANLYSSLSHWKDAEICLGKARELKEFSPEVLHTEGLMCEGREKIQEALAAYINALLLEPSYVPCKVLIGALWSKAGPDALPIARSLLSDALRLDPTNRKAWFYLGVIHRDEGRMADAIDCFQAAAMLEESDPIESFSSIL 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29915612 29920150 - ClCG11G016640.2 Cla11g01623 285445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01623 708 Gene3D Tetratricopeptide repeat domain 40 263 IPR011990 GO:0005515
Cla11g01623 708 ProSiteProfiles TPR repeat profile. 666 699 IPR019734 GO:0005515
Cla11g01623 708 Pfam Tetratricopeptide repeat 651 693 - -
Cla11g01623 708 Gene3D Tetratricopeptide repeat domain 511 701 IPR011990 GO:0005515
Cla11g01623 708 Gene3D Tetratricopeptide repeat domain 314 507 IPR011990 GO:0005515
Cla11g01623 708 MobiDBLite consensus disorder prediction 1 22 - -
Cla11g01623 708 SUPERFAMILY TPR-like 436 697 IPR011990 GO:0005515
Cla11g01623 708 SMART tpr_5 316 349 IPR019734 GO:0005515
Cla11g01623 708 SMART tpr_5 472 505 IPR019734 GO:0005515
Cla11g01623 708 SMART tpr_5 596 629 IPR019734 GO:0005515
Cla11g01623 708 SMART tpr_5 666 699 IPR019734 GO:0005515
Cla11g01623 708 SMART tpr_5 562 595 IPR019734 GO:0005515
Cla11g01623 708 PANTHER CALMODULIN-BINDING PROTEIN 14 707 - -
Cla11g01623 708 PANTHER PROTEIN NPG1 14 707 IPR043376 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00114 Cla-Chr7:1347521 Cla11g01623 Cla-Chr11:29915612 0 dispersed
Cla08g01625 Cla-Chr8:28844733 Cla11g01623 Cla-Chr11:29915612 3.97E-175 dispersed
Cla11g01623 Cla-Chr11:29915612 Cla05g00427 Cla-Chr5:3816421 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01623 K21843 - csv:101206641 1342.02