Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01673 ATGGGTAGCGAAGTGAATGAAAGCGACGAATACTCGCTGCTCAAGAATCTGAAGCTGGAAATTGATGGAGATGATGCGTGTTTTACTGTTTGCTTTTGGGTCTATCTCATGAATTCTACCACATTCCCTGTTTCAATCCTTCAGCAGGTGCAATTAGATTCCTCAGGCATGACTCCTTTTCTCATTCTAAGTGAAAGGAATAGACTGAAGATTATGCCTTTGACCACCTTACACAAAGCTGACGAAGGTTCCAGCCCTGGTAGTTCTTCTTCCGGGAATGTAGTTCCACATGAATATCTAGACATTGATTTTCCTCTGGAAAAATGGGTTCACATTGGATGTGAGTTCTCCACCAATTTTGTCAGGCTGCATATTGATGGTAAAATGGTCGGAGAAAAGCCTATATCATCTTCACCCAGTGAAGACACCTTTCCAAGGGGTCTGGGGAGGATTGTTTTAGGCAATAATGGTGAAGACAACAGCATGCAGGGCTATGTGCATAATGCAAAAGTTTTGCCTTCAGTTTCGTTGATCAGGGATCATTATGCTGAGGACCTACCTGTTAAATTATTTATTGACAACTCTTCCACCATGGAGATTGAAGAGGGCAGTGATGGCATATGGAATATAGTTGGTGGCAAGCCATCTTGTCGTAGAAATTTTTCATTGGATGTTATGCTGTTAGATTCCTCTGGCCAGCCTGTTCTGAAGGAACTCGAGGTTGTTGCCTCCCTCATCTATGCTGAAAGTGGGGAAGCTGTGGAGAAGTCAGGTGATGAAGAAGCTCCCCTTTTGGCAAGCTATGATGGTGTTGAATTTGCTTCCAGTGATAGACCAAGTAAACTGTTGCATGGGCGTGCCTCCTTTAAGCTAAAAATATCTCAGCTATCTTCTAAATGTGATAACAAGCTCTTCCGCATTAGATTTTGCATACCTAGTGTTGAGGGGTATCCCTTCTTCGAGGCTCTCTCTTCTCCAATTCGCTGTATCTCAAGGAGTCGAAATACTCGTATGTCTACTTTGATGTTGAAAAGATCTACCTTCCATCCTCTCGATGGATCTCGGTCATCTGGTTTGGACAATGGAACCTCAGAACATGAGCATGTTTCAGTAGATGAAGAAAAACCAAGTCTGCTATTGAAGAGGATTAAGTTGGGACAAGATAGACCAACCCCTAATGATGATCCTTCATCAGGGCAACCAGATGAGGAATGCAATTCTCATTCTTTTACTGCTAATGGGGCCGAAAACACAAGTTTAACAGGACCAAAAAATAATGGATCAAGAGGAGCCTCCCCATCAGACTCCGGGAGCACTGAAGCCAGGCATTTGGCTCTAAATAGAACTACAACCAATGGCAATCCAATATCAGATGTGAACATTTTCAAATATTGCCTAGCAGGTTTATCTGAGAGGTCACTTCTGCTCAAGGAGATTGCAACCTCTGTGTCACAGGAAGGAATTCTGGAATTTGCCGAGCATGTTTCCCTATATTCTGGATGCTTGCACCACAGGCATCAAATATTAATGTCAAGAAAATTAATAGAGGAGGGAACACAAGTTTGGAACTCAATCTCACATAATAAGCATCATGTTCACTGGGAGAATGTTGTTTTCGAGATTGAAGAGCATTTCATGAGAATTTCTGGCTGCAGCTCTAGATCTCTCACTCAGCAGGACTTTGAGTTGCTGAAAAGAATTTCTGGTTGTCAAGAGTATCTGGCCCAAGAGAACTTTGAAAGAATGTGGTGTTGGTTATATCCTGTAGCTTTTACTCTATCCAGACAATGGATAAATGCAATGTGGAGTTCTTTATCGCCTAAGTGGATTGAAGGATTCATTACCAAGGAAGAAGCCGAATTATCACTTCAAAGTCCAACAGGTCTTCAAGATCCTGGGACGTTTATTCTTCGATTTCCCACGTCAAGAAGCTGGCCTCATCCTGATGCTGGTAGCTTGGTAGTTACCTATGTCGGCAATGATTATGCTCTTCATCACAGACTTCTTACACTTGATCGCATTTTCAGTTCTGCTGAAGGAGAGAAGAATATGAGAAGTCTTCAGGATATGCTTCTAGCAGAACCCGAGCTCTCTCGTTTGGGAAGTGATAGAATTGGATGCAAACAAAGAAGAAGCCTCCTTAGTGATATGAATCAAAAGGGCTTAAGCTTTCCTTTATACCGACAGAGACAAGTCTCAAGAAAAGCTGCTATCTTCTTGCAAAGTTATTTCTTGTTCTTCTTTCTTCTGTTTCCAATTGCTGCTTATGCCACAACTGATGAAGATCAGAATCAAATGGATAGAGGCCAGGCTATAGCATTCTACGTCACAATCAGTTGTGTCGCATTTGTCGTGTCGAAGATAATCATAGCATTACTTCTTTACAAGCGCTGGAAAAGAAGACACATGATATACGAAGATGGGATATCAGGTGGGAAGATGGTCATGTTCAAGTCTCCAGCAACAAAGTTTTTAAAATCAGATGCATTTCTGAAGAAAACATTGAAACTGAACAACAAGGATATCATTGGCTCTGGAGGCCATGGGATTGTTTACAAACTTGCACTAAGTGATTCCATGACATTTGCTGTGAAAAGACTGAACAGAGGAAGTGCAGAAAGAGATCAAGGATTTGAGAGAGAATTGGAAGCAATGGGAGATATAAAGCATCGGAATATCGTGACGCTTCACGGATACTACACTGCTCCTCACTATAATCTCCTTATATATGAGCTAATGCCTAATGGAAGTCTGTATGCTTATCTACATGGAAGATCAAATGAGAAAGTTTTGGATTGGCCATCACGGTATAAAATAGCAGTAGGTGCAGCGAGAGGCATATCGTACCTTCATCACGACTGCATCCCACACATCATACATAGAGATATCAAATCGAGCAATATATTGTTGGATCAAAACATGGACGCCCAAGTGTCTGACTTTGGATTGGCAACGCTGATGGAACCTGACAAGACTCATGTATCAACAATTGTGGCAGGCACATTTGGGTACTTGGCTCCAGAATACTTCGATACTGGGCGAGCAACGGTAAAAGGAGATGTCTACAGCTTTGGTGTAGTTCTTCTTGAGCTCTTAACAGGGAAAAAACCGACTGATGAGGCATTTATGGAAGAGGGAACTAAACTTGTGACATGGGTGAAAACAGTTGTTCAGGAGAAAAGGGAAGAATATGTACTTGACAGTAGTTTGGGCTGTTGTCCAGTTGACGAGGTTAATGGCCTATTTAGCATTGCATTGAAGTGTCTTGAACCGGAACCCAGTCAGCGACCGACAATGGCAGAGGTTGTCAAAGTGCTTGAGCAGATAAAGTCAAATAGCATTGTAACAGATTCTTGA 3357 42.06 MGSEVNESDEYSLLKNLKLEIDGDDACFTVCFWVYLMNSTTFPVSILQQVQLDSSGMTPFLILSERNRLKIMPLTTLHKADEGSSPGSSSSGNVVPHEYLDIDFPLEKWVHIGCEFSTNFVRLHIDGKMVGEKPISSSPSEDTFPRGLGRIVLGNNGEDNSMQGYVHNAKVLPSVSLIRDHYAEDLPVKLFIDNSSTMEIEEGSDGIWNIVGGKPSCRRNFSLDVMLLDSSGQPVLKELEVVASLIYAESGEAVEKSGDEEAPLLASYDGVEFASSDRPSKLLHGRASFKLKISQLSSKCDNKLFRIRFCIPSVEGYPFFEALSSPIRCISRSRNTRMSTLMLKRSTFHPLDGSRSSGLDNGTSEHEHVSVDEEKPSLLLKRIKLGQDRPTPNDDPSSGQPDEECNSHSFTANGAENTSLTGPKNNGSRGASPSDSGSTEARHLALNRTTTNGNPISDVNIFKYCLAGLSERSLLLKEIATSVSQEGILEFAEHVSLYSGCLHHRHQILMSRKLIEEGTQVWNSISHNKHHVHWENVVFEIEEHFMRISGCSSRSLTQQDFELLKRISGCQEYLAQENFERMWCWLYPVAFTLSRQWINAMWSSLSPKWIEGFITKEEAELSLQSPTGLQDPGTFILRFPTSRSWPHPDAGSLVVTYVGNDYALHHRLLTLDRIFSSAEGEKNMRSLQDMLLAEPELSRLGSDRIGCKQRRSLLSDMNQKGLSFPLYRQRQVSRKAAIFLQSYFLFFFLLFPIAAYATTDEDQNQMDRGQAIAFYVTISCVAFVVSKIIIALLLYKRWKRRHMIYEDGISGGKMVMFKSPATKFLKSDAFLKKTLKLNNKDIIGSGGHGIVYKLALSDSMTFAVKRLNRGSAERDQGFERELEAMGDIKHRNIVTLHGYYTAPHYNLLIYELMPNGSLYAYLHGRSNEKVLDWPSRYKIAVGAARGISYLHHDCIPHIIHRDIKSSNILLDQNMDAQVSDFGLATLMEPDKTHVSTIVAGTFGYLAPEYFDTGRATVKGDVYSFGVVLLELLTGKKPTDEAFMEEGTKLVTWVKTVVQEKREEYVLDSSLGCCPVDEVNGLFSIALKCLEPEPSQRPTMAEVVKVLEQIKSNSIVTDS 1118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30348052 30359675 - ClCG11G017060.2 Cla11g01673 285495

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01673 1118 MobiDBLite consensus disorder prediction 348 373 - -
Cla11g01673 1118 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 171 IPR013320 -
Cla11g01673 1118 SUPERFAMILY Protein kinase-like (PK-like) 832 1108 IPR011009 -
Cla11g01673 1118 MobiDBLite consensus disorder prediction 385 441 - -
Cla11g01673 1118 ProSiteProfiles Src homology 2 (SH2) domain profile. 609 691 IPR000980 -
Cla11g01673 1118 ProSiteProfiles Protein kinase domain profile. 837 1109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g01673 1118 Gene3D - 2 183 - -
Cla11g01673 1118 PANTHER SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 8 704 IPR001217 GO:0003700|GO:0006355|GO:0007165
Cla11g01673 1118 Gene3D Transferase(Phosphotransferase) domain 1 913 1117 - -
Cla11g01673 1118 PANTHER SIGNAL TRANSDUCER AND TRANSCRIPTION ACTIVATOR 8 704 - -
Cla11g01673 1118 MobiDBLite consensus disorder prediction 391 441 - -
Cla11g01673 1118 Gene3D SH2 domain 595 736 IPR036860 -
Cla11g01673 1118 Pfam Concanavalin A-like lectin/glucanases superfamily 25 171 - -
Cla11g01673 1118 ProSitePatterns Protein kinases ATP-binding region signature. 843 865 IPR017441 GO:0005524
Cla11g01673 1118 SMART serkin_6 837 1109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g01673 1118 ProSitePatterns Serine/Threonine protein kinases active-site signature. 958 970 IPR008271 GO:0004672|GO:0006468
Cla11g01673 1118 Gene3D Phosphorylase Kinase; domain 1 804 912 - -
Cla11g01673 1118 Pfam Protein kinase domain 839 1104 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g01673 1118 SUPERFAMILY SH2 domain 606 671 IPR036860 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01673 - - - bhj:120086005 1323.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g01673 Cla-Chr11:30348052 Cla07g01072 Cla-Chr7:27323834 9.94E-93 dispersed
Cla11g01673 Cla-Chr11:30348052 Cla01g01420 Cla-Chr1:28700111 7.30E-94 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g10 . . . . . . . . . . . . . Car09g00604 . . . Bhi09g03584 . . . . Mch11g0971 . Cla11g01673 . . . . . . . . . . Lsi04g01967 Csa04g02246 . . . . . . . . . . . . Cmo09g00666 . . . . Cpe14g00338 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000795 3 6 3 2 3 0 4 0 0 2 2 0 4 3 2 4 0 2 4 0 3 2 1 1 2 3 1 1 2 5 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62079 PF00069 Pkinase 1.30E-46 CL0016 Cla TF
80962 PF00069 Pkinase 1.30E-46 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01673 Cla_Chr11 FPKM 9.787663 11.779044 8.088996 7.993833 14.297561 14.375049 13.289632 7.032673 6.561836 7.386569