Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01675 ATGTCAACAATGGCTTCCAGAAGTTTGAATTTATCGATCCTTCCAACTAGGTTTATTAGTTCTTCAAAACCCCAACAAAATTTCAACTTTGTTTCTTTATCTTCTCCTCCAAGTTTCAGAGCACCCATAAACAAAAAACTTTCATCATCTTCCATCCGTGTAATGGGCTCCTCCTCCTCTTCCCAGAGATCAGATGGCATCAAAGAGTCTGGCACCGTGGATTACAAATCTCTAAGCGATGATGAATGGAAGAAGCGGCTCACAGACCAGCAGTTTTATATTACCCGTCAGAAGGGAACTGAGAGAGCTTTTACCGGTGAGTATTGGAACACCAAAACGCCAGGGATATACCACTGCATATGTTGCGATACGCCACTATTTGAATCATCTACTAAATTTGACAGTGGAACTGGTTGGCCATCATATTACCAGCCTGTTGGTGATAATGTCAAATCCAAGCTAGACCTGTCCATCATTTTCATGCCTCGAGAGGAAGTTCTTTGTGCTGTTTGTGATGCTCATCTGGGCCATGTATTTGATGATGGACCGCCGCCAACTGGGAAACGTTACTGCATCAATAGTGCTGCGCTGAAATTGAAGCCGAAGTAA 609 43.19 MSTMASRSLNLSILPTRFISSSKPQQNFNFVSLSSPPSFRAPINKKLSSSSIRVMGSSSSSQRSDGIKESGTVDYKSLSDDEWKKRLTDQQFYITRQKGTERAFTGEYWNTKTPGIYHCICCDTPLFESSTKFDSGTGWPSYYQPVGDNVKSKLDLSIIFMPREEVLCAVCDAHLGHVFDDGPPPTGKRYCINSAALKLKPK 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30363196 30364252 - ClCG11G017090.2 Cla11g01675 285497

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01675 202 PANTHER METHIONINE SULFOXIDE REDUCTASE 44 202 IPR028427 GO:0006979|GO:0016671|GO:0030091
Cla11g01675 202 Pfam SelR domain 82 201 IPR002579 GO:0033743
Cla11g01675 202 Gene3D Peptide methionine sulfoxide reductase. 69 202 - -
Cla11g01675 202 ProSiteProfiles Methionine-R-sulfoxide reductase (MsrB) domain profile. 80 202 IPR002579 GO:0033743
Cla11g01675 202 MobiDBLite consensus disorder prediction 50 72 - -
Cla11g01675 202 SUPERFAMILY Mss4-like 78 201 IPR011057 -
Cla11g01675 202 MobiDBLite consensus disorder prediction 50 68 - -
Cla11g01675 202 TIGRFAM TIGR00357: methionine-R-sulfoxide reductase 78 201 IPR002579 GO:0033743
Cla11g01675 202 PANTHER METHIONINE-R-SULFOXIDE REDUCTASE B1 44 202 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01675 K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] - csv:101203253 358.221
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01607 Cla-Chr9:32211546 Cla11g01675 Cla-Chr11:30363196 5.37E-23 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g15 . . . . . . . . . . . . . Car09g00602 . Cpe06g00532 . Bhi09g03579 . . . Hepe01g1475 . . Cla11g01675 Cam11g1742 Cec11g1767 Cco11g1768 Clacu11g1900 Cmu11g1711 Cre11g2125 . Cone9ag0242 . . Lsi04g01969 Csa04g02248 . . . . . . . . . . . . Cmo09g00664 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006816 2 4 1 7 1 0 1 1 0 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01675 Cla_Chr11 FPKM 36.358944 36.446575 33.104259 34.333969 19.048933 16.837732 17.977777 35.884884 34.913509 35.817066