Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01678 ATGGATTCCTTCCATGGCTTACCTCCTCTCAAAAGGCTCAGAATCCTTCAAGAACAAGAACAAAATCGGCAGAAGGAGGATCAATCACTTGATTCATGTTCCCTCCCAGCCAAGAAGCGAAAGGAGTCTCGTGATTCATCATTTCTCCTCGTTCCTGACTCTACTTTGCCTCACCGAACCGCCATTTCCGCTTCTCCTTGCTGCTTGCCCACCAAGAAAAGAGTGTGGGCACTTCACCCTGATTTTGCCCCTGAGTCATTGGATCTCAATGTTGAATACAAGCCTCCTCTGGAGGAAGAATCGATATCGAAAACAGAACTAGAGAGAGAGATAAAGGAGAAGGAAGAGGATAAGGAAAAAGAGGTTTCTGATGCTGAGATGGAGATACAAGACGAAGATGAAGACGAAGATGATGGGATTCTCTGTGCGATTTGTCAAAGCACGGACGGGGATCCTTCAGATCCAATCGTGTTCTGCGACGGATGTGATTTGATGGTACACGCTTCGTGTTATGGTAATCCTCTTGTGAAGAGTGTACCTGAAGGAGATTGGTTTTGTATCCAATGCTTAGCTTCTTCGTCTTCCAAGATGGAGAAGAAGGCTTCAGAAACTCCATTTTCATGCTGCCTCTGTCCTCTGAAAGGAGGGGCTATGAAGCCGACGAACGATGGCCGATGGGCTCATATTGTTTGTGGACTCTATGTTCCTGAGGTGTTCTTTGAGGACCCAGATGGGAGAGAAGGGATTGATTGCTCAAAGATTCTGAAGAGGAGATGGAAATCCAAATGTTATATCTGCAAAACTTCTAGAGGTTGTGCTATTGATTGCTCAGAGCCTAAATGCAGTTTGGCTTTCCATGTTACTTGTGGGTTGAAGGAGGATCTCTGTATTGAGTATCAAGAAGGAAGAAGATCTGGTGCTATTGTAGCTGGATTCTGCAGAAACCATACAGACTTGTGGAAAAAGGGTTTGAATGGTGTTCACCTCTTTTGCTTGCAGCAACAATTAACAGGGAAGTTCAAGATTGTGGCCAGAGATGAAGGTAAGTTGTAG 1053 45.01 MDSFHGLPPLKRLRILQEQEQNRQKEDQSLDSCSLPAKKRKESRDSSFLLVPDSTLPHRTAISASPCCLPTKKRVWALHPDFAPESLDLNVEYKPPLEEESISKTELEREIKEKEEDKEKEVSDAEMEIQDEDEDEDDGILCAICQSTDGDPSDPIVFCDGCDLMVHASCYGNPLVKSVPEGDWFCIQCLASSSSKMEKKASETPFSCCLCPLKGGAMKPTNDGRWAHIVCGLYVPEVFFEDPDGREGIDCSKILKRRWKSKCYICKTSRGCAIDCSEPKCSLAFHVTCGLKEDLCIEYQEGRRSGAIVAGFCRNHTDLWKKGLNGVHLFCLQQQLTGKFKIVARDEGKL 350
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 30372427 30374444 - ClCG11G017110.2 Cla11g01678 285500
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01678 350 MobiDBLite consensus disorder prediction 98 125 - -
Cla11g01678 350 PANTHER PHD FINGER PROTEINS 3 105 - -
Cla11g01678 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 319 IPR013083 -
Cla11g01678 350 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 119 345 - -
Cla11g01678 350 MobiDBLite consensus disorder prediction 98 133 - -
Cla11g01678 350 SUPERFAMILY FYVE/PHD zinc finger 128 196 IPR011011 -
Cla11g01678 350 Pfam PHD-finger 142 190 IPR019787 -
Cla11g01678 350 CDD PHD_BRPF_JADE_like 141 189 - -
Cla11g01678 350 Pfam PHD-zinc-finger like domain 207 304 - -
Cla11g01678 350 PANTHER PHD FINGER PROTEINS 119 345 - -
Cla11g01678 350 MobiDBLite consensus disorder prediction 19 47 - -
Cla11g01678 350 ProSiteProfiles Extended PHD (ePHD) domain profile. 205 317 IPR034732 -
Cla11g01678 350 ProSiteProfiles Zinc finger PHD-type profile. 139 192 IPR019787 -
Cla11g01678 350 MobiDBLite consensus disorder prediction 19 48 - -
Cla11g01678 350 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 3 105 - -
Cla11g01678 350 Coils Coil 97 135 - -
Cla11g01678 350 SMART PHD_3 262 317 IPR001965 -
Cla11g01678 350 SMART PHD_3 141 190 IPR001965 -
Cla11g01678 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 203 IPR013083 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g01678 Cla-Chr11:30372427 Cla01g00269 Cla-Chr1:2764571 8.65E-06 dispersed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62080 PF13832 zf-HC5HC2H_2 2.10E-29 CL0390 Cla TR
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01678 K11380 - csv:101203744 585.874