Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla11g01678 | ATGGATTCCTTCCATGGCTTACCTCCTCTCAAAAGGCTCAGAATCCTTCAAGAACAAGAACAAAATCGGCAGAAGGAGGATCAATCACTTGATTCATGTTCCCTCCCAGCCAAGAAGCGAAAGGAGTCTCGTGATTCATCATTTCTCCTCGTTCCTGACTCTACTTTGCCTCACCGAACCGCCATTTCCGCTTCTCCTTGCTGCTTGCCCACCAAGAAAAGAGTGTGGGCACTTCACCCTGATTTTGCCCCTGAGTCATTGGATCTCAATGTTGAATACAAGCCTCCTCTGGAGGAAGAATCGATATCGAAAACAGAACTAGAGAGAGAGATAAAGGAGAAGGAAGAGGATAAGGAAAAAGAGGTTTCTGATGCTGAGATGGAGATACAAGACGAAGATGAAGACGAAGATGATGGGATTCTCTGTGCGATTTGTCAAAGCACGGACGGGGATCCTTCAGATCCAATCGTGTTCTGCGACGGATGTGATTTGATGGTACACGCTTCGTGTTATGGTAATCCTCTTGTGAAGAGTGTACCTGAAGGAGATTGGTTTTGTATCCAATGCTTAGCTTCTTCGTCTTCCAAGATGGAGAAGAAGGCTTCAGAAACTCCATTTTCATGCTGCCTCTGTCCTCTGAAAGGAGGGGCTATGAAGCCGACGAACGATGGCCGATGGGCTCATATTGTTTGTGGACTCTATGTTCCTGAGGTGTTCTTTGAGGACCCAGATGGGAGAGAAGGGATTGATTGCTCAAAGATTCTGAAGAGGAGATGGAAATCCAAATGTTATATCTGCAAAACTTCTAGAGGTTGTGCTATTGATTGCTCAGAGCCTAAATGCAGTTTGGCTTTCCATGTTACTTGTGGGTTGAAGGAGGATCTCTGTATTGAGTATCAAGAAGGAAGAAGATCTGGTGCTATTGTAGCTGGATTCTGCAGAAACCATACAGACTTGTGGAAAAAGGGTTTGAATGGTGTTCACCTCTTTTGCTTGCAGCAACAATTAACAGGGAAGTTCAAGATTGTGGCCAGAGATGAAGGTAAGTTGTAG | 1053 | 45.01 | MDSFHGLPPLKRLRILQEQEQNRQKEDQSLDSCSLPAKKRKESRDSSFLLVPDSTLPHRTAISASPCCLPTKKRVWALHPDFAPESLDLNVEYKPPLEEESISKTELEREIKEKEEDKEKEVSDAEMEIQDEDEDEDDGILCAICQSTDGDPSDPIVFCDGCDLMVHASCYGNPLVKSVPEGDWFCIQCLASSSSKMEKKASETPFSCCLCPLKGGAMKPTNDGRWAHIVCGLYVPEVFFEDPDGREGIDCSKILKRRWKSKCYICKTSRGCAIDCSEPKCSLAFHVTCGLKEDLCIEYQEGRRSGAIVAGFCRNHTDLWKKGLNGVHLFCLQQQLTGKFKIVARDEGKL | 350 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 30372427 | 30374444 | - | ClCG11G017110.2 | Cla11g01678 | 285500 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla11g01678 | 350 | MobiDBLite | consensus disorder prediction | 98 | 125 | - | - | |
| Cla11g01678 | 350 | PANTHER | PHD FINGER PROTEINS | 3 | 105 | - | - | |
| Cla11g01678 | 350 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 204 | 319 | IPR013083 | - | |
| Cla11g01678 | 350 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 119 | 345 | - | - | |
| Cla11g01678 | 350 | MobiDBLite | consensus disorder prediction | 98 | 133 | - | - | |
| Cla11g01678 | 350 | SUPERFAMILY | FYVE/PHD zinc finger | 128 | 196 | IPR011011 | - | |
| Cla11g01678 | 350 | Pfam | PHD-finger | 142 | 190 | IPR019787 | - | |
| Cla11g01678 | 350 | CDD | PHD_BRPF_JADE_like | 141 | 189 | - | - | |
| Cla11g01678 | 350 | Pfam | PHD-zinc-finger like domain | 207 | 304 | - | - | |
| Cla11g01678 | 350 | PANTHER | PHD FINGER PROTEINS | 119 | 345 | - | - | |
| Cla11g01678 | 350 | MobiDBLite | consensus disorder prediction | 19 | 47 | - | - | |
| Cla11g01678 | 350 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 205 | 317 | IPR034732 | - | |
| Cla11g01678 | 350 | ProSiteProfiles | Zinc finger PHD-type profile. | 139 | 192 | IPR019787 | - | |
| Cla11g01678 | 350 | MobiDBLite | consensus disorder prediction | 19 | 48 | - | - | |
| Cla11g01678 | 350 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 3 | 105 | - | - | |
| Cla11g01678 | 350 | Coils | Coil | 97 | 135 | - | - | |
| Cla11g01678 | 350 | SMART | PHD_3 | 262 | 317 | IPR001965 | - | |
| Cla11g01678 | 350 | SMART | PHD_3 | 141 | 190 | IPR001965 | - | |
| Cla11g01678 | 350 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 109 | 203 | IPR013083 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla11g01678 | Cla-Chr11:30372427 | Cla01g00269 | Cla-Chr1:2764571 | 8.65E-06 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 62080 | PF13832 | zf-HC5HC2H_2 | 2.10E-29 | CL0390 | Cla | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla11g01678 | K11380 | - | csv:101203744 | 585.874 |