Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01688 ATGGAGATGTCTAACGACTCATCGATCAAGAAACCGAAGAGGTTGACATCGGTAGTTTGGAATCACTTTGAGAGGGTCAGAAAGGCTGAGATTTGTTATGCTGTTTGTGTGCATTGCAACAAGAAGCTCAGTGGCTCAAGTAATAGCGGAACAACACATCTAAGAAATCACTTGATGCGATGTCTAAAAAGATCCAATTATGATGTTTCTCAACTACTTGTGGCCAAGAGATTAAAAAAGGACAATTCAAGTGGTCTTGCAAACATCAGCTTTGATGAAGGGCAGAGAAAAGAAGAGTTTAAATCAGCAATTGTGAAATATGATCCGGATCAGAGAAGGGATGAAGTGGTCACCATTGCAGGTAGTAAGTTTGATCAGGAGCGGAGTCAGAATGATCTTGCTCGTATGATCATATTGCATGGTTATCCATTGTCTATTGTTGAGCATGTGGGGTTTAAAGTTTTTGTCAAAAACGTTCAGCCGTTGTTTGAGGTATTACCCAATAGCACTGTTGAGCTTTCTTGTATGGAAATCTATCAGAAGGAGAAAGAGAAGATTTTTGAAACTATTAATAGATTGCAGGGTAGAATTAACGTTTCAGTTGAAATGTGGTCTTCATCAGAAAATATTGATTATTTATGCTTGACTGCACATTATATTGACGAGGATTGGAAATTACAGAAGAAGCTTTTGAATTTTATCACACTTGATTCTTCTCATACAGAGGACATGCTCTCAGACGTGATTATTAAATGCCTGATGGACTGGGACATTGACTGTAAGCTATTTGCACTGACATTTGATGATTTTTCAACCAATGACGAGATAATCAGAAGAATTAAAGAACACATATCGAAGAAAAGGCCTCTTTTGAGTAATGGTAGACTATTTGACATATGCTCTGCTGCACATACCATGAATGCAATTGCTGAAGACGTGATAGAAGTGATGCGAGAGGTTAACCAAAAGATCCGAGGGGGTTTTAAATATATCAGAAGTTCACAGCTCACTCAAGGGAGGTTCAATGAGATGGCTCATCAAGTAGGGATCTCCAGTCAGAAGATATTGGTCCCTGACAGTCCTGGTCAATGGAATTCAACATATTTCATGCTCGAGACAGCCGTGGAATACAAGGGTGCATTTGAACTTCTTCAAAAGCATGATCCTCATTATGCATCAGCTCTTACTGCTTTAGAGTGGGAATGGACAACTAGTGTTGCTGACTATTTGAAACTTTTTGTCGAAATCGTGAACATCTTCTCTGGCAACAAATCTCCTACAGCAAATATATATTTTCCTGAGATATGCGATGTTCACATTCAATTAATCGAGTGGTGTAAGAGCTCGGATAATTTTCTCAACTCCCTTGCATCAAAAGTAAAGGCCAAGTTTGATAAATATTGGAGCAAATGCAGTCTGGCTTTGGCAGTTGCTGCAGTTCTAGATCCAAGGTTCAAAATGAAATTGGTAGAGTACTACTATTCACAGATTTATGGTAGTACGGCCTTGGATCGGATTAAGGAAGTTTCTGATGGTATCAAGGAACTTTATGATGCATATTCAATCTGCTTTACAATGGTTGATCAAGGTTCAGCTTTGCGTGGAAGCAGCTTACCTGGGACGAGCAACGACTCTAGGGACAGGCTAAAAGGATTTGACGAGTTCCTTCATGAGACTTCCCAAGGTCAAAGTGTGATGTCTGATTTGGACAAATATTTAGAGGAACCGGTGTTTCCTCGAAACTGCGATTTCAACATATTAAACTGGTGGAAAGTCCACACCCCTAGGTACCCAATCTTGTCCATGATGGCTCGTGATGTTATCGGGACTCCAATGTCAAGCATTGCACCCGAGTTGGCATTTAGTACCGGAGGCCGAGTTCTTGACCGCTGTCGAAGTTCATTAAGCCCCGATACCCGTCAAGCGTTAATCTGTGCACAAGATTGGCTTCGTATAGAACTTGAAGATCCGAGGCCATTGTCTACTGCTTCGTACATACCACTTCTGCTCGGAACCAATTAA 2022 40.6 MEMSNDSSIKKPKRLTSVVWNHFERVRKAEICYAVCVHCNKKLSGSSNSGTTHLRNHLMRCLKRSNYDVSQLLVAKRLKKDNSSGLANISFDEGQRKEEFKSAIVKYDPDQRRDEVVTIAGSKFDQERSQNDLARMIILHGYPLSIVEHVGFKVFVKNVQPLFEVLPNSTVELSCMEIYQKEKEKIFETINRLQGRINVSVEMWSSSENIDYLCLTAHYIDEDWKLQKKLLNFITLDSSHTEDMLSDVIIKCLMDWDIDCKLFALTFDDFSTNDEIIRRIKEHISKKRPLLSNGRLFDICSAAHTMNAIAEDVIEVMREVNQKIRGGFKYIRSSQLTQGRFNEMAHQVGISSQKILVPDSPGQWNSTYFMLETAVEYKGAFELLQKHDPHYASALTALEWEWTTSVADYLKLFVEIVNIFSGNKSPTANIYFPEICDVHIQLIEWCKSSDNFLNSLASKVKAKFDKYWSKCSLALAVAAVLDPRFKMKLVEYYYSQIYGSTALDRIKEVSDGIKELYDAYSICFTMVDQGSALRGSSLPGTSNDSRDRLKGFDEFLHETSQGQSVMSDLDKYLEEPVFPRNCDFNILNWWKVHTPRYPILSMMARDVIGTPMSSIAPELAFSTGGRVLDRCRSSLSPDTRQALICAQDWLRIELEDPRPLSTASYIPLLLGTN 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30454605 30458163 - ClCG11G017200.1 Cla11g01688 285510

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01688 673 SUPERFAMILY Ribonuclease H-like 184 652 IPR012337 -
Cla11g01688 673 Pfam Domain of unknown function (DUF4413) 421 520 IPR025525 GO:0003677
Cla11g01688 673 PANTHER BED FINGER-RELATED 4 654 IPR045259 -
Cla11g01688 673 Coils Coil 176 196 - -
Cla11g01688 673 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN RICESLEEPER 1-LIKE 4 654 - -
Cla11g01688 673 SMART bed5 14 64 - -
Cla11g01688 673 Pfam hAT family C-terminal dimerisation region 568 650 IPR008906 GO:0046983
Cla11g01688 673 Pfam BED zinc finger 17 60 IPR003656 GO:0003677
Cla11g01688 673 ProSiteProfiles Zinc finger BED-type profile. 14 69 IPR003656 GO:0003677
Cla11g01688 673 SUPERFAMILY beta-beta-alpha zinc fingers 17 64 IPR036236 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01688 - - - csv:105435288 1253.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01478 Cla-Chr2:29309643 Cla11g01688 Cla-Chr11:30454605 4.96E-31 dispersed
Cla07g01162 Cla-Chr7:28568689 Cla11g01688 Cla-Chr11:30454605 5.78E-120 dispersed
Cla09g01081 Cla-Chr9:11487037 Cla11g01688 Cla-Chr11:30454605 3.35E-96 dispersed
Cla09g02169 Cla-Chr9:39355939 Cla11g01688 Cla-Chr11:30454605 0 dispersed
Cla11g00302 Cla-Chr11:3520642 Cla11g01688 Cla-Chr11:30454605 9.97E-40 dispersed
Cla11g01688 Cla-Chr11:30454605 Cla06g01139 Cla-Chr6:24351671 3.30E-132 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g29 . . . . . . . . . . . . . Car09g00597 . Cpe06g00527 . . . . . . . . Cla11g01688 Cam11g1752 Cec11g1776 Cco11g1777 Clacu11g1912 . Cre11g2133 . . . . Lsi04g01979 . . . . . . . . . . . . . Cmo09g00658 . . . . . . . . . . . . . . . . . . . . . . Chy07g00984 Cme07g01359
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000265 0 10 0 0 0 4 3 4 4 5 4 5 8 6 6 7 4 8 7 5 5 5 5 3 4 5 4 11 12 3 147
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01688 Cla_Chr11 FPKM 6.59009 6.508446 1.690186 0.589461 0.073668 0.254791 0.0 0.16083 0.136299 0.0