Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01691 ATGCTTCATATGACTGGATGTTGGTTCATCTCTTGTTCATTATTTTATTTTACCAGAAACTTATGTTATTATTATCTGTCTTCAATTGAAGTAGACTTTGAGTCTCCATCAAAAGGACGAAAACTCTTACCAGTAGGTGCTATACTTGGAATTGTGGCTGCAGTTGCCCTTGTTATAATTTCAATTCTTGGAATTCTATGGTGGCAAGGTTGCCTTGGACGGAAAAACACACTTCATCAAGATCTTAGAGGTCTAGATCTGAAAACTGGTTCATTCACATTAAGGCAAATCAAAGCTGCCACAAATAATTTTGACGTTTCTAATAAGATTGGAGAAGGTGGTTTTGGTCCTGTTTATAAGGCACTTGAATTAAAAGAAAAAGAGAGTTTAATGGAGCTAGTTGATCCAAGGTTAGGGTCCAATTTCAACCAGAGAGAGGCAATGACCATGATCAATATTGCTCTGCATTGCACCAATGTGGTGCCTGGAGAAAGGCCATGCATGTCTTTAGTGGTGGGGATGTTGGAAGGCAAGGTTGATGTGAAGGAGTTGGTTTCTCATCCAAATGAGTCGAGAGCAGAGATGGGTGCAATGTGGACCATTTTGAAGCAGAGTTTGAAACAAACTGACAATCAGAACCAGGAAGAGATTATGTCTACGGACATGTCAAGTACCAATTATTCTTCAGCATCAATGAGTAGAAACTAG 708 39.27 MLHMTGCWFISCSLFYFTRNLCYYYLSSIEVDFESPSKGRKLLPVGAILGIVAAVALVIISILGILWWQGCLGRKNTLHQDLRGLDLKTGSFTLRQIKAATNNFDVSNKIGEGGFGPVYKALELKEKESLMELVDPRLGSNFNQREAMTMINIALHCTNVVPGERPCMSLVVGMLEGKVDVKELVSHPNESRAEMGAMWTILKQSLKQTDNQNQEEIMSTDMSSTNYSSASMSRN 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30471360 30473476 - ClCG11G017230.1 Cla11g01691 285513

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01691 235 SUPERFAMILY Protein kinase-like (PK-like) 90 161 IPR011009 -
Cla11g01691 235 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 60 123 - -
Cla11g01691 235 MobiDBLite consensus disorder prediction 210 235 - -
Cla11g01691 235 Gene3D Phosphorylase Kinase; domain 1 73 161 - -
Cla11g01691 235 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 127 216 - -
Cla11g01691 235 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 60 123 - -
Cla11g01691 235 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 127 216 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01691 - - - bhj:120084992 143.665
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g01691 Cla-Chr11:30471360 Cla11g01693 Cla-Chr11:30524384 3.94E-14 dispersed
Cla11g01691 Cla-Chr11:30471360 Cla11g01692 Cla-Chr11:30473510 7.78E-27 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g44 . . . . . . . . . . . . . . . . . Bhi09g03554 . . . . . . Cla11g01691 Cam11g1755 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000046 4 29 6 9 6 2 3 2 2 7 5 2 11 7 9 9 2 7 5 2 7 7 10 9 9 10 6 5 16 25 233
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01691 Cla_Chr11 FPKM 14.130554 14.787489 20.037178 17.702419 4.14793 4.289756 4.513062 2.516089 2.27737 2.12634