Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01725 ATGGGAAACTTTCCCTTTCTGTTTTCTTTCTTGTTGTTTGCTCTGATAGTTTCTGGGAAGCATGAAACTAACAGAACTATGAGCTCAAAAGTGGTTGATGGTGGAAGAGGCAGAATAGGGGCCATTGTAGACAAAAGTTCCAGGATTGGTAAGGAAGAGAGTTTAGCTATGCTGATGGCTGTAGAGGATTTTAACAACATCAACGATCGAAATTTCAGTTTTTTCATCAGAGACTCCAAAAGTGATCCTAATCAGGCAGCTCTTGCAGCTGAAGATCTGATCAGCATGGCACAAGTTCGGGTTCTTATAGGCCCACAAACCTGGGAAGAAGTTTCTGTAGTTGCCAAGGTCGGAAATGAGAATCAGATTCCAGTTCTAGCGTTGGCTAATGACATGCCAAAGTGGGCAACTGAGAGATTGAAATTTTTGGTCCAAGCTTCTCCCTCCCAGTTTAATCAAATGAGGGCCATAGCTGCTATTATTGGTTCGTGGGATTGGCGTCTGGTTAATGTTATATATGAAGACGGAGATTTCTCGACCACCGACATATATCATTACCTTGAGCATGCTCTCAAAGATGTAGGAGCTGAAATAAGTGAATTTGTGAGTCTCCCTCACTTTGATTCTAAGTTATTGTCCAATGAATTAGAGAGGCTAAGAAGAGGGCCAAGTAGAGTTTTTGTAGTTCATATGTCGTTCAAGTTTGGATTGCATCTATTTCAAACTGCAAAAGAGATGGGAATGATGGAAAAAGACTATGTTTGGATCACTACTGATTCTTTCACAAGCCTTGCACATTCTTTTGATGTTTCTGTCAACTCTTTACTTCAAGGAGTTATTGGTGTCAAGAGTTACTTCCCGGAAAGCAATCCTCCGTATCATAATTTTTACCATCAGTTCCGTAGTAGGTTTAGATTAGAGCATTTTGATGAGTACAACCACGAGCCTAGTATTTTTGCGGTACAGGCTTATGATGCTGTGAGAACAGCAGCTATGGCAATGAGTAGAACCCAAGGAAAAGGTGATCACTTGTTGGAATTCATCAAGCTCACTGATTTTCAAGGGTTGGGTGGAAAGATTCAGTTTAAAGACAGAAAATTAGCCCCAGCCAATACTTTTCAAATCATCAATGTCATGGGGAGGAGTTATAGGGACCTAGGCTTCTGGTCTGACGAATTAGGCTTCTCACAAGAGTTGGGGAAAAATTCGTCTACTAGCTTGTCGATGAAGGATCTTGGCCAAGTGTTTTGGCCAGGTGGATATACGGAAACTCCAAGGGGATGGGCTATACCAACAGATGCCAGGCCGATGAGAATTGGTGTGCCAACTAGTCCCATGTTCAAGCAGTATGTAAATGTGGAAGGAGATCAGATAGGAAACAATTTATCTTTCAATGGACTTGCAATTGATCTGTTTAAAGCAACTATAGACAAGTTGTGCTTCCCTCTGCCGCACGAGTTCTACGCGTACAATGGAACGTATGATGATTTAGTGAAGCAAATCTATTTGAAGGATGCTTCTCTTTCTAACTATCTTTTCTTGTTCTGCCTGTTGATGAAGGAATTCGATGCAGCAGTAGGTGACATAGCAATAGTATCAACACGTTATGAACATGCTGAATTTACACATCCTTACTCTGAAGCAGGACTTGTGATGATTGTTCCTACCATAAATAATAGAAGTAATAGAGCATTGTTGTTCACAAAGCCCTTTACTTTGACCATGTGGATCGTAATTTCTGTGGTAAATGTCTACAATGGCTTTGTTGTTTGGTTTATAGAACGAAATCACAGTCCTGAACCCGAAGGTTCGATGTTTAGTCAAGCTGGAACCATGCTCTGTTCATCCTTCACCACTCTCTTCTCCTTGCAGGGTAATAGGCTGCACAGTAACTTGTCGCGGATGACCATGGTTGTTTGGTTATTTGTGGCACTTGTGATAACTCAGATATACACAGCCAATCTTACCAGCATGCTCACTATTCAAAAGCTTGAACCGACTATATCGAACATCGAGACTCTCCAAAGAATGAATGCATTTGTGGGATGTGGCAGAGGATCCTTTGTCAAAGGATATTTGGAGACAGTTTTACACTTCCCCACAGAAACCATAAAAAACTACTCCACACCTGATGGTTTAGCGGATGCTCTCAGAAACCAAGAGATAGCAGCTACTTTTCTTGAAGTTCCTTTTGCGAAATTATTCCTTGCAAAATTTTGCAAAGAGTTCATGATTTCTGGGCCAACCTACAAAGTCGGAGGATTTGGATTTGCATTTCCAAGAGGCTCTCTGTTGTTACAATATGTGAACCAAGCATTGCTTAAAGTATCTGAAACAGGCAAGTACAGAGAGTTGGAGGACAGCATGCTTGCTAGTGAGAAATGTGAGGATGGGGAAGGAAAAGATGGAAGTCCAAGCCTCAGCCCCAACAGCTTCTTTTTACTATTTATATTGAGTGCAGGAGTATCAACAATAGCACTCACATTCTATGTCTTTAATGCTACTCATAACTCTAATCTTCAACAATACACTATTTGGAGATTAATGATAGCTGTAATGAGAAAATGGGGGAATCATAGAAGACGATTTTTTCGACGGGTAAGTGAAGAGCCACATACCATCCCAAATAACTTCCCAAACACCACAAACATGCGAAGTCTAGCTTAG 2667 41.06 MGNFPFLFSFLLFALIVSGKHETNRTMSSKVVDGGRGRIGAIVDKSSRIGKEESLAMLMAVEDFNNINDRNFSFFIRDSKSDPNQAALAAEDLISMAQVRVLIGPQTWEEVSVVAKVGNENQIPVLALANDMPKWATERLKFLVQASPSQFNQMRAIAAIIGSWDWRLVNVIYEDGDFSTTDIYHYLEHALKDVGAEISEFVSLPHFDSKLLSNELERLRRGPSRVFVVHMSFKFGLHLFQTAKEMGMMEKDYVWITTDSFTSLAHSFDVSVNSLLQGVIGVKSYFPESNPPYHNFYHQFRSRFRLEHFDEYNHEPSIFAVQAYDAVRTAAMAMSRTQGKGDHLLEFIKLTDFQGLGGKIQFKDRKLAPANTFQIINVMGRSYRDLGFWSDELGFSQELGKNSSTSLSMKDLGQVFWPGGYTETPRGWAIPTDARPMRIGVPTSPMFKQYVNVEGDQIGNNLSFNGLAIDLFKATIDKLCFPLPHEFYAYNGTYDDLVKQIYLKDASLSNYLFLFCLLMKEFDAAVGDIAIVSTRYEHAEFTHPYSEAGLVMIVPTINNRSNRALLFTKPFTLTMWIVISVVNVYNGFVVWFIERNHSPEPEGSMFSQAGTMLCSSFTTLFSLQGNRLHSNLSRMTMVVWLFVALVITQIYTANLTSMLTIQKLEPTISNIETLQRMNAFVGCGRGSFVKGYLETVLHFPTETIKNYSTPDGLADALRNQEIAATFLEVPFAKLFLAKFCKEFMISGPTYKVGGFGFAFPRGSLLLQYVNQALLKVSETGKYRELEDSMLASEKCEDGEGKDGSPSLSPNSFFLLFILSAGVSTIALTFYVFNATHNSNLQQYTIWRLMIAVMRKWGNHRRRFFRRVSEEPHTIPNNFPNTTNMRSLA 888
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30871158 30874400 + ClCG11G017680.2 Cla11g01725 285547

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01725 888 CDD GluR_Plant 435 790 - -
Cla11g01725 888 Gene3D - 36 157 - -
Cla11g01725 888 Gene3D - 158 313 - -
Cla11g01725 888 PIRSF IGluLR_plant 1 341 IPR017103 -
Cla11g01725 888 PIRSF IGluLR_plant 336 873 IPR017103 -
Cla11g01725 888 Gene3D - 436 564 - -
Cla11g01725 888 Gene3D - 343 435 - -
Cla11g01725 888 Pfam Receptor family ligand binding region 54 378 IPR001828 -
Cla11g01725 888 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 881 - -
Cla11g01725 888 SMART GluR_14 438 792 IPR001320 GO:0015276|GO:0016020
Cla11g01725 888 Pfam Bacterial extracellular solute-binding proteins, family 3 520 787 IPR001638 -
Cla11g01725 888 SUPERFAMILY Periplasmic binding protein-like II 414 787 - -
Cla11g01725 888 Pfam Ligand-gated ion channel 788 820 IPR001320 GO:0015276|GO:0016020
Cla11g01725 888 Gene3D - 565 696 - -
Cla11g01725 888 SUPERFAMILY Periplasmic binding protein-like I 38 429 IPR028082 -
Cla11g01725 888 PANTHER GLUTAMATE RECEPTOR 32 881 - -
Cla11g01725 888 CDD PBP1_GABAb_receptor_plant 38 399 IPR044440 -
Cla11g01725 888 Gene3D - 697 794 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01725 - - - csv:101209708 1545.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g01725 Cla-Chr11:30871158 Cla07g01293 Cla-Chr7:30042395 2.16E-133 dispersed
Cla11g01725 Cla-Chr11:30871158 Cla11g01726 Cla-Chr11:30874607 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g145 Blo03g00683 . . . . . . . . . Cma01g01234 Cma09g00831 . . . Cpe06g00662 Cpe02g00682 Bhi09g03484 . . . Hepe01g1422 Mch11g1029 . Cla11g01725 Cam11g1795 Cec11g1816 Cco11g1822 Clacu11g1954 Cmu11g1764 Cre11g2172 . . . . Lsi04g02033 Csa04g02305 Chy07g00041 Cme07g00553 . . . . . . . . . Cmo01g01287 Cmo09g00824 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001228 1 5 2 2 1 0 0 2 0 3 2 3 2 3 3 2 2 1 2 2 3 3 4 2 2 3 2 4 3 4 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01725 Cla_Chr11 FPKM 0.427848 0.0 31.695007 32.352337 96.842834 98.160942 85.837326 19.584183 23.84584 22.410419