Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01726 ATGGGGATTATGAGAAAAATCGAACAACAAGGGAGCTCTATGGGGAAGCTTTCTGGAAAGCATGAAACCGAAAGAAATGTGAGTGCAACAATGGTTGATGATGGAAAGGGCAGAATAGGGGCCATTGTAGATCTGAGTTCCAGGATTGGTAAGGAAGAGATTTTAGCTATGCACATGGCTATAGAGGATTTTAACTCCTTGAACAATCAAAATTTCAGTCTTATCATTAAAGATTCCAGAAGTGATCCCAATCTTGCAGCTAAAGAGCTCATCAGTGTACAACAAGTTCATGCTTTAATAGGGCCACAAACTTGGGAAATGGCATCCGTAGTTGCTGAGGTTGGAAATGAGAATCAGATTCCTGTACTAGCATTAGCTAATGAAATACCAAAGTGGGCAACTGAGAGGTTCAAATTTTTGGTTCAGGCTTCTCCTTCCCAGTTAAATCAAATGAAGGCTATAGCTGGTATTATCAGTTCATGGGATTGGCATCTAGTCAATGTTATATATGAAGATAGAGATTTCTCAACCACAGGAATATTTCCTGATCTTGTACATGCCCTCAAAGATGTAGGAGCTGAAGTAAGTGAATTTGTTGGTCTCTCACAGTTTGATTCTGATTTATTTTCTAAAGAACTGGAAAAGCTAAGAAGAGGGTCATGCAGAATTTTTGTAGTGCATATGTCTTTCAAGTTGGCACTGCATCTATTTGAGATAGCAAACAAGATGGGAATGATGGGAAAGGACTATGTATGGATCACCACTGATACTTTCACAAGCCTTGCACATTCTTTCAATGTTTCTATCAACTCTATGCTACAAGGAGTTGTTGGAGTCAAGAGCTACTTCCCAGAAAGAAATCCTCCATATCATGAATTTTATCGTCGGTTTTCTCAAAGGTTTAGATTAGAGTATTTTGATGAGGACAACAACGAGCCTGGTATTTTTGCTGTACAGGCTTATGATGCTGCAATGACAGTGGCTATGGCTATGAGTGAAATCCAAGAAAAGGGTAATCACTTGTTAGAAAAAATAAAGCTCACTCACTTTCAAGGACTCAGTGGAAAGATTCAGTTTAAGGACAGAAAATTAGCCCCAGCTGATACTTTCCAGATTATCAATGTGGTGGGGAGAAGTTATAGGGAACATAGCTTCTGGTCTGATAAATCAGGCTTCTCAAGAGAGCTGAGGGAAAATTCATCTTCTAGCTTGTCGATGAAGAATCTTGGTGAAATGTTTTGGCCAGGTGGATCTTCAAAAACACCGAGGGGATGGGTCATACCAATGGATGCCAATTCATTGAGGATTGGGGTGCCAGTTAGTTCCATGTTCAAACAGTATGTACATATGGGAAAAAATTTATTCTTCGATGGACTTGCAATTGATCTGTTTGAAGCAACTTTAGACTACCTTCCTTTTGCTCTACCACGTGTCTTCTGTCCTTTCAATGGAACTTATGATGATTTAGTGCAAGGAATCTACTTGAAGAAATATGATGCAGCAATAGGTGACATAGCAATAACAACAAAACGCTTAGACCATGCAGAATTTACACATCCTTACTCTGAAGCAGGATTGGTGATGATAGTTCCTACCAGAAAAGACACAAGGAACAAAGCATTGTTGTTCACAAAGCCCTTTACTGTGACCATGTGGATTCTAATTGCTGTGGTAACTGCCTACAATGGCTTCGTCGTGTGGTTCATAGAACGAAATCACTGTCCTGAACATGAAGGTTCAATGTTTGATCAAGCTGGAGCTATGCTTTGCTCATCCTTCACCACTCTCTTCTCCTTGCACGGTAATAGGCTGCATAGTAACTTATCGCGGATGGCTATGGTGGCTTGGCTATTTATGGCACTTGTGATAACTCAGACATACACAGCTAATCTTGCTAGCATGCTCACTATTCAAAAGTTTGAAGCGACGATATCGAATATTGAGACTCTCCATAGAAAAAATGCATCTGTGGGAAACGGAAGAGGAACCTTTGTCCAAAGATATTTGGAAGAAGTTTTAGACTTTCCAGCGGAAAATATAAAAGGCTACAGTACCCCGAACGATCTAGTCAACGCTCTCAGAAACCAGGAGATAGCAGCTGCATTTCTTGAAGTCCCTTTTGCAAAATTATTCCTTGCAAGATTTTGCAAGGAATTCGTGATTTCTGGACCAACCTACCTTGTTGGAGGATTTGGATTTGCATTTCCGACTGGCTCTCCGCTGTTACGAGATTTTAACAAAGCACTGCTTAAGGTATCTGAAACTGGGAAGTATAGAAAGTTGGAGGAAAGCATGATTGCTAGTGAGAAATGTGAGGATAGTAATGCAAAAGATGAAAGTTCAAGCCTTAGCCCCAACAGCTTCTTTTTACTATTTTCATTGAGTGGAGGAGTATCAACAATGGCATTAACATTGTACATTATCAATGCTCATAAATCTTGTCTTCAACATAATGCTATTTGGAGATTAATGTTAGCTGTAATTAAGGGCTGGAGAAATCACAGCAAGGGATTTTCTCGACGAGTAAGCGATGAGCCACAGACCGTCCCAAAGAACTTCCCAAAGGCTACAAACTTGCAAATCCAGCATGAAACTGAAGGAAACACAAACTCGACGATGAATGATAGTGGAAAGGGCAGAATAGGGCTCATAGTAGACAAGAGTTCCAGGATTGGTAAGGAAGAGATTTTAGCTATGCAGATGGCTATAGAAGATTTTAACTCCTTCAGCAATCAAAGTTTTAGTCTTGTCATCAGAGACTACAAAAGTGATCCAAATCTTGCAGCTCTTGAAGCTAATGATCTCATCAGTATGCAACAAGTTCAGGTTCTTATAGGACCACAAACTTGGGAAGCTTCATCCATAGTTGCTGAGGTTGGAAATGAGAAACAGGTTCCAGTTCTAACGTTAGCTAATGAAATACCAAAATGGGCGACCGAGAGGTTCAAATTTTTGGTTCAAGCTTCTCCCTCCCAACTACATCAAATGAGGGCTATAGCTGGTATTATCAGTTCGTGGGATTGGCACCTTGTCAATGTAATATATGAAGATAGAGATTTCTCAACCACCGGAATATTTCCTCATCTTGTACATGCCCTCCAAGACGTAGGAGCTGAAGTAAGTGAATTTGTTGGTCTCTCTCAATTTGATTTTGATTTATTTTCCAAAGAATTGGAGAGGCTAAGAAGAGGGTCAAGCAGAATATTTGTAGTTCATATGTCTTTCAAGTTGTCACTGTGTCTATTTGAGATAGCAAAAGAGATGGGAATGATGAAAAACGACTATGTTTGGATCACTACTGATTCTTTCACAAACCTTGCACATTCTTTCAATGCTTCTATCAACTCTCTACTACAAGGAGTTGTTGGAGTCAAGAGCTTCTTCCCTGAAGACAATCCTCAATTTCATGAATTTTATCTTCGGTTTTGTCAAAGGTTTAGATTAGAGCATTCTGACGAGGACAATCACGAGCCTGGTATTTTTGCGATACAGGCTTATGATGCTGCAAGGACAACAGCTATGGCAATGAGTGAAATCCAAGAAAAGGGGAATCACTTGTTGGAAAAAATAAAGCTCACTGATTTTCAAGGACTCGGTGGAAAGATTCAGTTTAAGGACAGAAAACTAGCCCTATCTGATACTTTTCAGATCATTAATGTGATGGGGAGGAGTTATAGGGATTTAGGCTTCTGGTCGGATAAGTTAGGCTTCTCACGAGAGTTGAGGGAAAATTCGTCTTCTAGCTCGTCGATGAAGGATCTTGGCGAAGTGTTTTGGCCCGGTGGATCTTTGATATCTCCAAGGGGATGGGTTGTACCAACAGATGCCAATTCATTGAGAATTGGGGTGCCTACTAGTTCCATGTTCAGACAGTATGTACATGTGGAAGAAGATCCTTTGGGAAATAATTTATCCTTCAATGGACTTGCAATTGATCTGTTCAAAGCAACCTTAGACAACCTTAACTTCCCTCTGTCCTACCACTTTTTTCGTTTCGATGGACCATATGATGATTTGGTGAAGCAAATCTACCTGAAGAACTTCGATGCAGCCGTAGGTGATATAGCAATATTATCACGGCGCTATGAACATGCGGAGTTTACGCATCCTTACTCAGAAGCAGGACTGGTGATGGTAGTTCCTACCATAAAAGATTCAAGTAATAGAGCATTGATGTTCACAAAGCCCTTTACAGTGACCATGTGGTTTGCAATTGCTGTGATAAATGTCTACAATGGCTTTGTAGTCTGGTTCATAGAACGCAATCGGTATCCCGGTCATGAAGGTTCGATGTTTAATCAAGCCGGAACCATGCTTTGCTCATCATTCACCACTCTCTTCTCCTTACATGGTAATATGCTGCACAGTAACTTGTCTAGGATGACCATGGTGGTTTGGCTATTTATGGCACTTGTGATAACTCAAATATATACTGCTAATCTTACAAGCATGCTCACTATTCAAAAGCTCGAACCGACGATAACGAATATCGAAACTCTCCAAAGGGCAAATGCGTTAGTCGGATTTGGCAGAGGATCATTTGTCAAAAGATATTTGGAAGAAGTCTTACACTTTCGTGCCGAAAACATAAGAAACTACTCTACACCTCATGATTATGCCGAAGCTCTCAGAAAGCGAGAGATAGCAGCTGCTTTTCTTGAAGTCCCTTTTGTAAAAATATTCCTTGCAAGATTTTGTAGGGAATTCATGGTATCTGGACCAACCTACAAAGTTGGAGGATTTGGATTTGCATTTCCGAGAGGCTCTCCGCTTTTAACGGATATTAACGAAGCATTGCTCAAGGTATCTGAAACTGGGAAGTTCAGAGATTTGGAAGATAGCATGATTGCTAATGAGAAATGTGAGGATGGGGATGCAAAGGGTGAAAATTCAAGCCTCAGCCCCAACAGCTTCTTCATATTATTTGTATTGAGTGGAGGAGTATCAACCATAGCTCTTACATTATACATCTTTAATGCTCATAACTTCAGTTTTCAACAGAATACCATTTGGAGATTAATGATAGCTGTAATGAGACACTGGGGAAAGCACAGGAGGCAATTTTCTCGACGAGTAAGTGATGAACCGCAAATGACTGTCTCAAATAACTTCTCGAACGCCACGAACTTGCAAATTCAG 5139 40.32 MGIMRKIEQQGSSMGKLSGKHETERNVSATMVDDGKGRIGAIVDLSSRIGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPNLAAKELISVQQVHALIGPQTWEMASVVAEVGNENQIPVLALANEIPKWATERFKFLVQASPSQLNQMKAIAGIISSWDWHLVNVIYEDRDFSTTGIFPDLVHALKDVGAEVSEFVGLSQFDSDLFSKELEKLRRGSCRIFVVHMSFKLALHLFEIANKMGMMGKDYVWITTDTFTSLAHSFNVSINSMLQGVVGVKSYFPERNPPYHEFYRRFSQRFRLEYFDEDNNEPGIFAVQAYDAAMTVAMAMSEIQEKGNHLLEKIKLTHFQGLSGKIQFKDRKLAPADTFQIINVVGRSYREHSFWSDKSGFSRELRENSSSSLSMKNLGEMFWPGGSSKTPRGWVIPMDANSLRIGVPVSSMFKQYVHMGKNLFFDGLAIDLFEATLDYLPFALPRVFCPFNGTYDDLVQGIYLKKYDAAIGDIAITTKRLDHAEFTHPYSEAGLVMIVPTRKDTRNKALLFTKPFTVTMWILIAVVTAYNGFVVWFIERNHCPEHEGSMFDQAGAMLCSSFTTLFSLHGNRLHSNLSRMAMVAWLFMALVITQTYTANLASMLTIQKFEATISNIETLHRKNASVGNGRGTFVQRYLEEVLDFPAENIKGYSTPNDLVNALRNQEIAAAFLEVPFAKLFLARFCKEFVISGPTYLVGGFGFAFPTGSPLLRDFNKALLKVSETGKYRKLEESMIASEKCEDSNAKDESSSLSPNSFFLLFSLSGGVSTMALTLYIINAHKSCLQHNAIWRLMLAVIKGWRNHSKGFSRRVSDEPQTVPKNFPKATNLQIQHETEGNTNSTMNDSGKGRIGLIVDKSSRIGKEEILAMQMAIEDFNSFSNQSFSLVIRDYKSDPNLAALEANDLISMQQVQVLIGPQTWEASSIVAEVGNEKQVPVLTLANEIPKWATERFKFLVQASPSQLHQMRAIAGIISSWDWHLVNVIYEDRDFSTTGIFPHLVHALQDVGAEVSEFVGLSQFDFDLFSKELERLRRGSSRIFVVHMSFKLSLCLFEIAKEMGMMKNDYVWITTDSFTNLAHSFNASINSLLQGVVGVKSFFPEDNPQFHEFYLRFCQRFRLEHSDEDNHEPGIFAIQAYDAARTTAMAMSEIQEKGNHLLEKIKLTDFQGLGGKIQFKDRKLALSDTFQIINVMGRSYRDLGFWSDKLGFSRELRENSSSSSSMKDLGEVFWPGGSLISPRGWVVPTDANSLRIGVPTSSMFRQYVHVEEDPLGNNLSFNGLAIDLFKATLDNLNFPLSYHFFRFDGPYDDLVKQIYLKNFDAAVGDIAILSRRYEHAEFTHPYSEAGLVMVVPTIKDSSNRALMFTKPFTVTMWFAIAVINVYNGFVVWFIERNRYPGHEGSMFNQAGTMLCSSFTTLFSLHGNMLHSNLSRMTMVVWLFMALVITQIYTANLTSMLTIQKLEPTITNIETLQRANALVGFGRGSFVKRYLEEVLHFRAENIRNYSTPHDYAEALRKREIAAAFLEVPFVKIFLARFCREFMVSGPTYKVGGFGFAFPRGSPLLTDINEALLKVSETGKFRDLEDSMIANEKCEDGDAKGENSSLSPNSFFILFVLSGGVSTIALTLYIFNAHNFSFQQNTIWRLMIAVMRHWGKHRRQFSRRVSDEPQMTVSNNFSNATNLQIQ 1713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30874607 30891239 + ClCG11G017690.1 Cla11g01726 285548

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01726 1713 Gene3D - 153 309 - -
Cla11g01726 1713 Gene3D - 997 1156 - -
Cla11g01726 1713 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 31 858 - -
Cla11g01726 1713 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 874 1706 - -
Cla11g01726 1713 CDD PBP1_GABAb_receptor_plant 880 1241 IPR044440 -
Cla11g01726 1713 SUPERFAMILY Periplasmic binding protein-like I 880 1271 IPR028082 -
Cla11g01726 1713 CDD GluR_Plant 1279 1616 - -
Cla11g01726 1713 Gene3D - 434 540 - -
Cla11g01726 1713 Gene3D - 1278 1390 - -
Cla11g01726 1713 CDD PBP1_GABAb_receptor_plant 38 396 IPR044440 -
Cla11g01726 1713 Gene3D - 878 996 - -
Cla11g01726 1713 SUPERFAMILY Periplasmic binding protein-like II 412 763 - -
Cla11g01726 1713 SMART GluR_14 1280 1618 IPR001320 GO:0015276|GO:0016020
Cla11g01726 1713 SMART GluR_14 435 768 IPR001320 GO:0015276|GO:0016020
Cla11g01726 1713 MobiDBLite consensus disorder prediction 1 25 - -
Cla11g01726 1713 CDD GluR_Plant 434 766 - -
Cla11g01726 1713 Pfam Receptor family ligand binding region 55 376 IPR001828 -
Cla11g01726 1713 Pfam Receptor family ligand binding region 897 1220 IPR001828 -
Cla11g01726 1713 Pfam Ligand-gated ion channel 1613 1646 IPR001320 GO:0015276|GO:0016020
Cla11g01726 1713 Gene3D - 1391 1532 - -
Cla11g01726 1713 Gene3D - 541 668 - -
Cla11g01726 1713 Gene3D - 1566 1623 - -
Cla11g01726 1713 Gene3D - 315 433 - -
Cla11g01726 1713 Gene3D - 1172 1277 - -
Cla11g01726 1713 Gene3D - 669 770 - -
Cla11g01726 1713 Pfam Bacterial extracellular solute-binding proteins, family 3 1303 1612 IPR001638 -
Cla11g01726 1713 SUPERFAMILY Periplasmic binding protein-like I 38 427 IPR028082 -
Cla11g01726 1713 Pfam Bacterial extracellular solute-binding proteins, family 3 451 763 IPR001638 -
Cla11g01726 1713 PANTHER GLUTAMATE RECEPTOR 31 858 - -
Cla11g01726 1713 PANTHER GLUTAMATE RECEPTOR 874 1706 - -
Cla11g01726 1713 Pfam Ligand-gated ion channel 764 794 IPR001320 GO:0015276|GO:0016020
Cla11g01726 1713 SUPERFAMILY Periplasmic binding protein-like II 1257 1613 - -
Cla11g01726 1713 Gene3D - 37 152 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01726 - - - csv:101210201 1504.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01573 Cla-Chr8:28381356 Cla11g01726 Cla-Chr11:30874607 1.28E-103 dispersed
Cla08g01574 Cla-Chr8:28404523 Cla11g01726 Cla-Chr11:30874607 3.04E-27 dispersed
Cla11g01726 Cla-Chr11:30874607 Cla07g01293 Cla-Chr7:30042395 4.97E-127 dispersed
Cla11g01725 Cla-Chr11:30871158 Cla11g01726 Cla-Chr11:30874607 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g146 Blo03g00681 . . . . . . . . . . . . . . . . Bhi09g03482 Tan01g4350 . . Hepe01g1420 Mch11g1030 . Cla11g01726 Cam11g1796 Cec11g1817 Cco11g1823 Clacu11g1955 Cmu11g1765 Cre11g2173 . . . . Lsi04g02034 Csa04g02306 Chy07g00042 Cme07g00554 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001228 1 5 2 2 1 0 0 2 0 3 2 3 2 3 3 2 2 1 2 2 3 3 4 2 2 3 2 4 3 4 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01726 Cla_Chr11 FPKM 27.540913 31.608727 20.280514 22.347851 26.588524 19.108271 23.816172 10.957328 9.941828 8.473226