Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01727 ATGGCTCAATTGCCCCCAAAAATACCCTCTTTCCCTCAAAATTGGCCTCATTTTCCTCCTCCTAATTCAATGCCCAATTTAACTCCTTCTCCTCCTCCTCCTCCGCCGCCCTCCGCCACCCACCACCACAACTCTTCTTGGGTCGATGATTTTCTTGACTTCTCCACCGCCCGCCGCGGCCTTCACCGGAGATCCATTAGCGACTCCATTGCTTTCCTTGAAACCCCATTTTCCGATCAATGTCGTAACTCCGCCCTTCTTCATCCTCCTCCTCCTTTTGACCGCCTTGACGACGACCAACTTATGTCCATGTTTACCGATGACATTTCCATCCCCATTCCTGCTTCCCCCTCCAATCCTTCCACTCCTTCCGACCAAAATAGTAACAACGACGACAAAAACCCAACCGAGGACGCCATGTTTCCGCCTCCACCGCCACCACCTCTGCCTCCGCATCAGTTGAAAAATGAACCTGGCGAGGTTGAAATTAGCTCCTCTTGCCAACTGCAGCAGCAATCTCAACCACCGCCGCCTTCCTCTGCCGCTGATAATACCATTGATCCCAAAAGAGTTAAGAGAATTTTGGCAAATCGACAATCAGCACAAAGGTCGAGAGTCAGAAAATTGCAATATATTTCTGAGCTCGAGAGAAGTGTAACCACATTACAGACTGAAGTATCAGCATTGTCTCCTAGAGTGGCATTTTTAGACCACCAAAGATTGATTCTAAATGTCGATAATAGTGCTCTCAAGCAGAGAATTGCAGCTTTGGCTCAAGATAAGATTTTCAAAGATGCTCATCAAGAGGCGTTAAAGAAGGAAATAGAGAGATTGAGGCAAGTTTACCACCAACAAAGTTTGAAGAAAATGAGCGGTAATCAAAATGGAGCTGCGCAACCGCAAGAACCGCCGTCCGGAGAAGGTACTCCGCCGCAAGCGGCTGAGATGGAGAAGGGGCAAGCTGTAAGTTGA 972 48.35 MAQLPPKIPSFPQNWPHFPPPNSMPNLTPSPPPPPPPSATHHHNSSWVDDFLDFSTARRGLHRRSISDSIAFLETPFSDQCRNSALLHPPPPFDRLDDDQLMSMFTDDISIPIPASPSNPSTPSDQNSNNDDKNPTEDAMFPPPPPPPLPPHQLKNEPGEVEISSSCQLQQQSQPPPPSSAADNTIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQSLKKMSGNQNGAAQPQEPPSGEGTPPQAAEMEKGQAVS 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30892573 30894869 - ClCG11G017700.1 Cla11g01727 285549

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01727 323 MobiDBLite consensus disorder prediction 1 40 - -
Cla11g01727 323 Gene3D - 188 261 - -
Cla11g01727 323 MobiDBLite consensus disorder prediction 282 323 - -
Cla11g01727 323 Pfam bZIP transcription factor 189 234 IPR004827 GO:0003700|GO:0006355
Cla11g01727 323 SMART brlzneu 185 249 IPR004827 GO:0003700|GO:0006355
Cla11g01727 323 MobiDBLite consensus disorder prediction 284 302 - -
Cla11g01727 323 PANTHER BASIC LEUCINE ZIPPER 34 1 302 - -
Cla11g01727 323 MobiDBLite consensus disorder prediction 81 187 - -
Cla11g01727 323 MobiDBLite consensus disorder prediction 159 180 - -
Cla11g01727 323 MobiDBLite consensus disorder prediction 1 45 - -
Cla11g01727 323 CDD bZIP_plant_RF2 190 240 IPR044759 GO:0003700|GO:0006355
Cla11g01727 323 Coils Coil 268 288 - -
Cla11g01727 323 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 192 207 IPR004827 GO:0003700|GO:0006355
Cla11g01727 323 MobiDBLite consensus disorder prediction 138 154 - -
Cla11g01727 323 SUPERFAMILY Leucine zipper domain 189 243 IPR046347 GO:0003700|GO:0006355
Cla11g01727 323 MobiDBLite consensus disorder prediction 112 135 - -
Cla11g01727 323 PANTHER BASIC LEUCINE ZIPPER 2 1 302 - -
Cla11g01727 323 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 187 239 IPR004827 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01727 - - - csv:101210452 448.358
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00218 Cla-Chr2:2272540 Cla11g01727 Cla-Chr11:30892573 3.51E-110 dispersed
Cla02g01896 Cla-Chr2:34141701 Cla11g01727 Cla-Chr11:30892573 7.00E-22 dispersed
Cla03g00047 Cla-Chr3:493293 Cla11g01727 Cla-Chr11:30892573 8.11E-20 dispersed
Cla09g00904 Cla-Chr9:9382833 Cla11g01727 Cla-Chr11:30892573 3.59E-14 dispersed
Cla11g01315 Cla-Chr11:26665905 Cla11g01727 Cla-Chr11:30892573 2.14E-26 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g147 . . . . . . . . . . Cma01g01233 Cma09g00832 Car01g01054 Car09g00746 Sed05g2538 Cpe06g00663 Cpe02g00683 Bhi09g03480 Tan01g4352 Cmetu04g0980 . Hepe01g1419 Mch11g1032 . Cla11g01727 Cam11g1797 Cec11g1818 Cco11g1824 Clacu11g1956 Cmu11g1766 Cre11g2174 Cone6ag0180 Cone9ag0205 Cone14ag1040 Cone15ag1029 Lsi04g02035 Csa04g02307 Chy07g00043 Cme07g00555 . . . . . . . . . Cmo01g01286 Cmo09g00825 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000658 3 3 2 3 3 1 5 3 2 3 2 2 4 3 3 5 2 5 5 3 3 3 3 3 3 3 3 9 3 3 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62083 PF00170 bZIP_1 8.60E-10 CL0018 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01727 Cla_Chr11 FPKM 38.475983 38.924438 47.906563 47.697758 34.422516 38.557823 33.882278 78.153778 75.340904 76.074188