Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01728 ATGGCAGCCTATAGAACGGACGACGATTACGATTACCTCTTTAAAGTGGTTCTCATCGGTGACTCGGGTGTGGGCAAATCCAATCTTCTCTCAAGGTTTACGCGTAATGAGTTCAGTCTTGAGTCCAAATCCACAATCGGTGTTGAATTTGCCACTCGGAGTATTCGGGTTGATGACAAGATCGTCAAGGCTCAGATTTGGGACACCGCTGGCCAAGAAAGGTGGGGAGGTGGGATTTATAGGGCTTTTGGGTGTCTTCTTCTGTTGGTGGGGATCTGTGAATTAAGTAGCTTTCAGATATTGGTACTCAGTGGTTGCTTGCTTGTTGAGATGATGATCGCGTTATTTATCTGTTGCAGTTGGAGTTTCCGGGATTACTTTTTAGATACCTTCAGTCTCAAGAAATTTGATACGAGTTTTGGAGTTATGAATTTTGATCGATACCGTGCAATCACAAGTGCATACTATCGAGGAGCTGTTGGTGCATTGCTTGTCTATGATGTCACACGTCATGTGACATTCGAAAATGTTGAGAGATGGTTGAAAGAGCTTAGGGATCACACCGATTCCAATATTGTGATAATGCTAGTCGGCAATAAGGCAGACTTGCGACATCTGCGTGCTGTTTCAACTGAGGATGCCAAGGCCTTTGCAGAGAAGGAGAACACATTCTTCATGGAGACATCTGCCCTTGAGTCTCTGAATGTCGAGAATGCTTTTACCGAAGTGCTAACCCAAATCTATCGTGTAGTCTGCAGAAAAGCGCTCGAGATTGGTGAGGATCCTGCAGCATTGCCTAAAGGACAAACCATTAACGTTGGAAACAAGGATGATGTTTCTGCAGTGAAGAAAGTTGGTTGCTGCTCTTCATGA 873 44.56 MAAYRTDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERWGGGIYRAFGCLLLLVGICELSSFQILVLSGCLLVEMMIALFICCSWSFRDYFLDTFSLKKFDTSFGVMNFDRYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAKAFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVCRKALEIGEDPAALPKGQTINVGNKDDVSAVKKVGCCSS 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30908301 30910020 + ClCG11G017710.2 Cla11g01728 285550

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01728 290 PANTHER DRAB11-RELATED 1 76 - -
Cla11g01728 290 Pfam Ras family 15 99 IPR001806 GO:0003924|GO:0005525
Cla11g01728 290 Pfam Ras family 146 248 IPR001806 GO:0003924|GO:0005525
Cla11g01728 290 CDD Rab11_like 11 248 - -
Cla11g01728 290 Gene3D - 2 104 IPR027417 -
Cla11g01728 290 SMART rho_sub_3 16 246 IPR001806 GO:0003924|GO:0005525
Cla11g01728 290 TIGRFAM small_GTP: small GTP-binding protein domain 12 74 IPR005225 GO:0005525
Cla11g01728 290 TIGRFAM small_GTP: small GTP-binding protein domain 146 243 IPR005225 GO:0005525
Cla11g01728 290 ProSiteProfiles small GTPase Rho family profile. 7 252 - -
Cla11g01728 290 ProSiteProfiles small GTPase Ras family profile. 2 290 IPR001806 GO:0003924|GO:0005525
Cla11g01728 290 ProSiteProfiles small GTPase Rab1 family profile. 9 288 - -
Cla11g01728 290 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 253 IPR027417 -
Cla11g01728 290 PANTHER DRAB11-RELATED 146 288 - -
Cla11g01728 290 Gene3D - 123 280 IPR027417 -
Cla11g01728 290 SMART ras_sub_4 11 250 - -
Cla11g01728 290 PRINTS Transforming protein P21 ras signature 55 77 - -
Cla11g01728 290 PRINTS Transforming protein P21 ras signature 14 35 - -
Cla11g01728 290 PRINTS Transforming protein P21 ras signature 37 53 - -
Cla11g01728 290 PANTHER RAS-RELATED PROTEIN RABA1F-LIKE 1 76 - -
Cla11g01728 290 PANTHER RAS-RELATED PROTEIN RABA1F-LIKE 146 288 - -
Cla11g01728 290 SMART rab_sub_5 14 250 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01728 K07904 RAB11A; Ras-related protein Rab-11A - ming:122065655 392.119
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02332 Cla-Chr1:37122687 Cla11g01728 Cla-Chr11:30908301 1.86E-114 dispersed
Cla03g00698 Cla-Chr3:8454014 Cla11g01728 Cla-Chr11:30908301 7.23E-118 dispersed
Cla11g01728 Cla-Chr11:30908301 Cla07g00975 Cla-Chr7:25951795 2.68E-41 dispersed
Cla04g00042 Cla-Chr4:1226010 Cla11g01728 Cla-Chr11:30908301 4.48E-28 transposed
Cla04g00041 Cla-Chr4:1222556 Cla11g01728 Cla-Chr11:30908301 1.96E-53 transposed
Cla11g01728 Cla-Chr11:30908301 Cla07g00245 Cla-Chr7:2700750 8.07E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g151 . . . . . . . . . . Cma01g01232 Cma09g00833 Car01g01053 Car09g00748 . Cpe06g00664 Cpe02g00684 Bhi09g03479 . . . Hepe01g1418 Mch11g1033 . Cla11g01728 Cam11g1798 Cec11g1819 Cco11g1825 Clacu11g1957 Cmu11g1767 Cre11g2175 . Cone10ag1362 . . Lsi04g02036 Csa04g02308 Chy07g00044 Cme07g00557 . . . . . . . . . Cmo01g01285 Cmo09g00827 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000143 10 6 8 7 9 5 11 6 5 6 6 5 10 6 6 12 5 7 12 6 6 7 5 6 6 7 4 11 6 3 209
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01728 Cla_Chr11 FPKM 6.241577 5.702095 0.293062 0.391452 19.11334 18.734612 20.486021 0.0 0.0 0.1216