Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01731 ATGTTTCTGAGAGCTCCGCTGCTTAAGCTTTCATCATTCTACTCAATCCCATGTCATCCTCTGGTTCCGTTGTCTCTCTCTTCCTCAATTTGTTCTTCTTCTCGCACACCTTTCGCCATCCGATGCCATTCATCTCTCCCCACTGCCCACGAACCATCTTCTTCATCTCCCTCTGAATACCCCGATGTGGCGGATAATCGTTGGCGGCCCACGTGTTTGTATTTCACACAGGGCAAGTGCACAATGTTGAATTTTTATAAGGAACTCCATTATTTGAGAATTGAAGAACTCTTGTCTTATGTTATGGATGATCCACTCCACATAAAGAAGTTCAATCATGATATCTCCAGGGAGCTTCAGGTAGAAATTGCTAGGTCAAACCATATGCGAACTCAGGACATTGATTTTTTTCTGGTGCTTGATTTGGAGGGTAAAGTTGAAATTATTGAGTTTCCAGTCATATTAGTCAATGCCAAGACAATGGGTGTGACAGGTTTTTTCCACAGGTTTGTTAGGCCATCAAGAATGAGTGAACAAAGGATAAATGAATACATTGAAGGAAAATACGGCAAGTTTGGAGTTGACCGTGTCTGGCATGACACAGCCATACTGTACAAGGATGTTATTCAACAGTTCGAAGATTGGCTGGTTCATCATCAGCTATGGAGGAAGGAACTGGGTGGTGTTCTTGATCGAGCAGCATTTGTGACATGTGGCAACTGGGATATAAAAACTCAGGTCCCACATCAATGTAGTGTGTCGAAGATGAAACTTCCTGACTATTTTATGGAGTGGATCAACATTAAAGATGTCTATCTCAACTTTTACCAAAAGAAGGCAACGGGAATGGTGACGATGATGAGACAACTTGAAATACCCTTGGTGGGAAGCCATCATCTTGGTATAGATGATACAAAGAACATCGTGAGAGTGTTGCAGAGAATGGTTGCTGATGGTGCACATTTGCAGATCACTGCACGTAGGAATCCCAAATCTCAACATGTTAAGTTTCTTTTTGAGAACCGTATTTAA 1032 42.05 MFLRAPLLKLSSFYSIPCHPLVPLSLSSSICSSSRTPFAIRCHSSLPTAHEPSSSSPSEYPDVADNRWRPTCLYFTQGKCTMLNFYKELHYLRIEELLSYVMDDPLHIKKFNHDISRELQVEIARSNHMRTQDIDFFLVLDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHDTAILYKDVIQQFEDWLVHHQLWRKELGGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFYQKKATGMVTMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADGAHLQITARRNPKSQHVKFLFENRI 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30921289 30924534 - ClCG11G017740.2 Cla11g01731 285553

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01731 343 CDD ERI-1_3'hExo_like 137 315 - -
Cla11g01731 343 PANTHER 3'-5' EXONUCLEASE ERI1-RELATED 101 343 - -
Cla11g01731 343 PANTHER 3'-5' EXONUCLEASE ERI1-RELATED 23 84 - -
Cla11g01731 343 Pfam Exonuclease 141 312 IPR013520 -
Cla11g01731 343 Gene3D - 124 341 IPR036397 GO:0003676
Cla11g01731 343 PANTHER OS06G0353400 PROTEIN 101 343 - -
Cla11g01731 343 PANTHER OS06G0353400 PROTEIN 23 84 - -
Cla11g01731 343 SUPERFAMILY Ribonuclease H-like 133 324 IPR012337 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01731 - - - csv:101211439 587.415
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01080 Cla-Chr8:23555781 Cla11g01731 Cla-Chr11:30921289 1.45E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g171 . . . . . . . . . . . Cma09g00836 . Car09g00751 Sed05g2541 Cpe06g00667 . Bhi09g03472 Tan01g4356 Cmetu07g0939 . Hepe01g1415 Mch11g1036 . Cla11g01731 Cam11g1800 Cec11g1821 Cco11g1827 Clacu11g1959 Cmu11g1769 Cre11g2177 . . Cone14ag1048 . Lsi04g02040 Csa04g02310 Chy07g00046 Cme07g00564 . . . . . . . . . . Cmo09g00831 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011810 0 1 0 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01731 Cla_Chr11 FPKM 10.616959 11.92429 10.773899 7.934437 10.757776 7.823339 10.288661 8.414964 6.353695 8.33731