Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01757 ATGGCAACGGCATCAGATGTGGGTGTGAACGGAGAGAAGAGGGCTAAGATATCCCCTGATTTCTTGGAGAGCAAGGGGGTCCATGAAACTAAGGCTCTACTTTCAGAGCTGTGCCGCCATTTTTATGGGCTTGGATGGGTCTCTGGAACCGGCGGTAGTATCACCATCAAAGTCCATGATGATGCTATTCCCAAGCAGAATCAGCTCGTCGTCATGTCCCCCTCTGGTGTTCAGAAGGAGCGAATGGTACCAGAGGACATGTATGTGTTATCTCCTGATGGTTCTGTCTTATCTTCTCCTACTGTGAAGCCATACCCACACAAGCCTCCAAAATGTTCGGACTGTGGTCCCCTTTTTATGAAGGTTTTGATTTCACATTCTTCTTCTACCATTCTGATGTGCGATTTCTTGTTCATTTTGTCAGACGACATTCATGGGATAGAATCATGCCTTGCAACAATGATCAATCCATCAGCAAAGGAATTTAGAATTACTCATATGGAAATGATCAAAGGAATCAAAGGGCATGGTTACTATGACGAACTTGTGATCCCAATAATAGAAAATACAGCTTATGAATACGAGCTCACAGAATCTCTAGCTAAAGCAATTGAAGCCTACCCAAAAACAACTGCTGTGCTTGTTCGAAACCATGGCATTTATGTATGGGGGGATTCATGGATCCATGCAAAAACTCAGGCTGAATGTTACCACTATCTCTTTGATGCGGCCATCAAGCTTTATCAGTTGGGCCTAGACTGGTCTACTCCAAATCATGGTCCCATTAAGAAAGTCAAAGAAGTTGTAGTAGGTGGATGCAACAAAGAAGCATCTTCAAAGCATTGCATTGTTCTTGATATAGAAGGAACTACTACTCCAATCTCGTTTGTGACCGATGTTCTTTTTCCATATGCTCGCGACAATGTCCACAAACATTTGTCTCTAACATTTGACACTGCAGAGACTAAAGAGGATATTAAGTTGTTGCGTTCTCAGGTGCAAGATGATCTGGAAAAAGGTGTTGCTGGTGCCATGCCTATTCCTCTTGATGATTCTGCAAAAGAGGAGGTTATTGGAGCTATAGTTGCGAATGTCGAAGCCATGATAAAAGCCGACAGGAAAATTCCTGCTCTAAAACAGTTGCAAGGTCATATATGGCTAACTGGATTTGAGAACAATGAATTGAAAGGTGAAGTTTTTGAGGATGTACCAGGAGCTCTGGAAAGGTGGCACGACGCGGGCATAAAGGTATACATATATTCAAGCGGCAGTAGGTTAGCACAGAGGCTTCTATTTGGAAATACAAAATATGGGGATCTAAGAAAATATTTGTCTGGATATTTCGATACCGCAGTGGGGAACAAAAGAGAAATGCGCAGTTATGTTGAAATCAGAGAGTCTGTTGGAGTTGATAAGCCATCAGAAATTTTGTTTGTCACTGATGTTTTCCAGGAAGCTGTAGCTGCAAAAGCAGCAGGACTGGATGTGAATATATCCATACGACCCGGAAACGCTCCTCTTCCAGACAATCATGGGTTCAAAACCATTCAATCTTTCTCAGAAATATGA 1569 42.51 MATASDVGVNGEKRAKISPDFLESKGVHETKALLSELCRHFYGLGWVSGTGGSITIKVHDDAIPKQNQLVVMSPSGVQKERMVPEDMYVLSPDGSVLSSPTVKPYPHKPPKCSDCGPLFMKVLISHSSSTILMCDFLFILSDDIHGIESCLATMINPSAKEFRITHMEMIKGIKGHGYYDELVIPIIENTAYEYELTESLAKAIEAYPKTTAVLVRNHGIYVWGDSWIHAKTQAECYHYLFDAAIKLYQLGLDWSTPNHGPIKKVKEVVVGGCNKEASSKHCIVLDIEGTTTPISFVTDVLFPYARDNVHKHLSLTFDTAETKEDIKLLRSQVQDDLEKGVAGAMPIPLDDSAKEEVIGAIVANVEAMIKADRKIPALKQLQGHIWLTGFENNELKGEVFEDVPGALERWHDAGIKVYIYSSGSRLAQRLLFGNTKYGDLRKYLSGYFDTAVGNKREMRSYVEIRESVGVDKPSEILFVTDVFQEAVAAKAAGLDVNISIRPGNAPLPDNHGFKTIQSFSEI 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31177081 31184589 + ClCG11G018020.1 Cla11g01757 285579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01757 522 SMART Aldolase_II_2 32 245 IPR001303 -
Cla11g01757 522 TIGRFAM HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 350 493 IPR006439 -
Cla11g01757 522 SUPERFAMILY AraD/HMP-PK domain-like 28 265 IPR036409 -
Cla11g01757 522 CDD HAD_EP 282 503 IPR023943 GO:0000287|GO:0019509|GO:0043874
Cla11g01757 522 Gene3D - 389 522 IPR023214 -
Cla11g01757 522 TIGRFAM salvage_mtnB: methylthioribulose-1-phosphate dehydratase 34 249 IPR017714 GO:0005737|GO:0019509|GO:0046872
Cla11g01757 522 Gene3D - 27 262 IPR036409 -
Cla11g01757 522 PANTHER BIFUNCTIONAL METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE/ENOLASE-PHOSPHATASE E1-RELATED 6 522 - -
Cla11g01757 522 SUPERFAMILY HAD-like 281 522 IPR036412 -
Cla11g01757 522 SFLD enolase-phosphatase 281 521 IPR023943 GO:0000287|GO:0019509|GO:0043874
Cla11g01757 522 Hamap Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1. 19 522 IPR027505 -
Cla11g01757 522 SFLD Haloacid Dehalogenase 281 521 - -
Cla11g01757 522 Hamap Enolase-phosphatase E1 [ENOPH1]. 281 522 IPR027511 GO:0019509
Cla11g01757 522 Pfam Class II Aldolase and Adducin N-terminal domain 34 244 IPR001303 -
Cla11g01757 522 PANTHER METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE 6 522 IPR017714 GO:0005737|GO:0019509|GO:0046872
Cla11g01757 522 Gene3D - 294 388 - -
Cla11g01757 522 TIGRFAM enolase-ppase: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 282 521 IPR023943 GO:0000287|GO:0019509|GO:0043874
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01757 K16054 DEP1; methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1 [EC:4.2.1.109 3.1.3.77] - csv:101205098 962.985
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g201 . . . . Bpe09g00237 . . Bma13g00947 Cmo16g00433 . Cma01g01212 . Car01g01036 . Sed04g2403 . Cpe02g00698 Bhi09g03436 Tan01g0815 . . Hepe01g1391 . . Cla11g01757 Cam11g1824 Cec11g1844 Cco11g1851 Clacu11g1984 Cmu11g1794 Cre11g2201 Cone6ag0152 Cone9ag0177 . Cone15ag1052 Lsi04g02067 Csa04g02338 Chy07g00069 . . Blo10g00760 . Bda12g00837 . . . . . Cmo01g01266 . . Cma16g00399 . Car16g00364 Cpe14g00336 . . . . . . . . . . . . . . . . . Chy06g01160 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002536 1 3 1 2 1 1 2 1 1 2 2 2 2 2 2 2 1 3 1 2 2 2 2 2 2 2 2 4 3 2 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01757 Cla_Chr11 FPKM 3.496984 2.63121 0.773332 1.166156 10.596892 11.428678 9.961446 1.559494 1.328419 1.091953