Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01762 ATGTTTGCGTATTGGCTTATGTGCAGCTTTAAGTGGATAACAATGGAGGGATCATCTGATCACCTTAGGAACCAGGATGATATATCTGGGGTTTGTGAGGAAGATATACTAGCTGACCCTTATGTGCGTTCTCATAAATGGAGTGATATTAGCTTGAGGCAATGGTTGGATAAGCCAGGAAGATCCGTGGATGCTCTTGAATGTCTTCATATATTTAGGCAAATAGTGGAGATTGTTAATATTGCTCATACTCAAGGCATTGTTGTTCACAATGTGCGTCCTTCGTGCTTTGTGATGTCTTCTTTCAACCATGTAACTTTTATTGAGTCGGCATCATGTTCAGATTCTGGCTCTGATTCTCTTGAGGATGGCCTAAATAGTCAAATGGCAGAGGTTAAACCATCATCTTCTCCCTTTCCAAGCAGCCTTGGAAGTGAGGGTTTCCGATCTGTTATGACCCCCATAAACGCATTGTCGGAAACTAGTTGCATGCAGTCAAGTTCAGTATATGCTGCCCAAGTATCGTTAAATGAAGGGTCTGGAAAATGTAGAAAAAAAGATAGAAGACATATTGATGAAACAGAAGATAAGATGCAATCATTTCCCATGAAACAGATATTGGCCATGGAGACTACATGGTACACTAGCCCAGAAGAGGCTTCTGATGGCCCAAGTTCAAGTGCTTCAGATATCTACCGGTTAGGAGTTCTTCTTTTTGAGTTATTCTGCTCCTTCAGCTCGAGAGAAGAGAAGAGTAGAACTATGTCCAGCTTGAGGCATAGAGTGCTTCCTACTCAATTGCTGTTGAAGTGGCCAAAAGAAGCTTCATTTTGCTTATGGTTACTGCATCCTGAGCCAACTAATCGACCTAAGCTAAGTATTTTTATTTTACTAATAGGGAACGGGATTACTATTGCTAAGGAAAGTTGCAAAAGACGATCTGTGGTGATGAGATATTACCTCGGGGAAAATTGTAGGGCTTCTCTTGTCTTCTTCTTTCACAGCGATATATTGCAGAGTGAATTTCTCAATGAACCTAAAGATGACCTAGAAGAACGTGAAGCAGCAATCAAGCTTCGAAAAAAAATTGAAGAGCAGGAGTTACTGCTAGAATTCCTTTTGCTTATGCAACAAAGAAAGCAGGAAGCTGCTCATAAGCTGCAAGATACTATTTCATTTTTGTGCAGTGATATTGAACAAGTTATGAGGCACCAAACTAATTTCAAGAAAAAGATTGGGTCACGCACAGATCTTGTGAAGGACAATCATTTGCCATTAAATCTCCCTTCAATGCCTCCTGTCAGGAATACTGATTCTGCTGGTTTGGGATCAAGGAAACGATTTAGGCCAGGAATTTTGACCCATGATATAGAAGCATGCGGTGATAATCTCGATGACTGTGAGAAGTCGAATCCAGACAATGAAAATCAACAAGGTGTACTTTTTAAGAGTTCTCGATTAATGAAGAACTTCAAGAAATTGGAGTTGGCATATTTTTTGATGAGAGGTAGAGTAAACAAGCCATCAAGGCAGTTTGTTAAACACTCGTCAATAAGTAGCGATGGTAGGGGGTCCGTAGTTTTGACTGAAAGAAGTTCAGTTAATAATTTGGCTTCAAAAGAGAGTTGCAATGATAATAGACAAGGTGGGTGGATAAGTCCGTTCCTGGAGGGTTTGTGCAAGTATCTATCCTTTAGCAAGTTAAAAGTCAAGGCAGACTTGAAGCAAGGAGATCTATTGAATTCCTCCAACTTAGTATGTTCTCTCAGTTTTGATCGCGATGGAGAATTTTTTGCCACAGCTGGTGTTAATAGGAAAATTAAAGTGTTTGGATATGACTCAATCGTGAACGAAGACCGTGATATTCATTACCCTGTTGTTGAAATGGCTAGCAGGTCGAAACTAAGCAGTGTTTGTTGGAATCGTTACATCAAAAGTCAAATTGCTTCAAGTAATTTTGAGGGTGTAGTGCAGGTGTGGGATGTCACGAGAAGTCAAGTGGTCACTGAAATGGGAGAACATGAGAGGCGCGTATGGTCCATTGACTTCTCATCAGCAGATCCTACAATTTTGGCTAGTGGGAGTGATGATGGTTCAGTTAAGCTCTGGAGTATCAATCAGGCAATTCTATTTTTGCACTTGGTGGATGTCAGCTTTGAAACTAAACGTACTACAGGTATAAGTATTGGAACAATCAGAACAAAAGCCAATGTCTGCTGTGTACAGTTTCCTGTGGATTCTGGTCGGTCCCTTGCATTTGGTTCAGCTGATCACAAAATTTATTACTATGATATGCGGAATATAAGAGTACCTTTGTGCACCTTCACTGGACATAACAAAACTGTGAGTTACGTCAAGTATATAGACTCGAGCACTCTTGTTTCTGCATCCACTGATAACACCTTGAAGCTCTGGGATTTGTCCATGTGCACATCCCGGGTTGTTGATTCTCCTGTCCAGTCCTTCACGGGCCACATGAATATCAAGAACTTTGTGGGGCTGTCCGTCTCTGATGGTTACATTGCTACAGGTTCAGAGACAAATGAGGTTTTCATTTACCACAAAGCCTTTCCAATGCCAGCATTGTCGTACAAGTTTCAAATGGATCCTCTTTCGAATCATGAAATGGACGACTCCGCACAATTTATCTCTTCGGTTTGTTGGCGAGGCCAGTCGTCTTCATTAGTAGCTGCAAACTCAACTGGGCATATCAAAATTTTGGAAATGGTTTAG 2733 40.94 MFAYWLMCSFKWITMEGSSDHLRNQDDISGVCEEDILADPYVRSHKWSDISLRQWLDKPGRSVDALECLHIFRQIVEIVNIAHTQGIVVHNVRPSCFVMSSFNHVTFIESASCSDSGSDSLEDGLNSQMAEVKPSSSPFPSSLGSEGFRSVMTPINALSETSCMQSSSVYAAQVSLNEGSGKCRKKDRRHIDETEDKMQSFPMKQILAMETTWYTSPEEASDGPSSSASDIYRLGVLLFELFCSFSSREEKSRTMSSLRHRVLPTQLLLKWPKEASFCLWLLHPEPTNRPKLSIFILLIGNGITIAKESCKRRSVVMRYYLGENCRASLVFFFHSDILQSEFLNEPKDDLEEREAAIKLRKKIEEQELLLEFLLLMQQRKQEAAHKLQDTISFLCSDIEQVMRHQTNFKKKIGSRTDLVKDNHLPLNLPSMPPVRNTDSAGLGSRKRFRPGILTHDIEACGDNLDDCEKSNPDNENQQGVLFKSSRLMKNFKKLELAYFLMRGRVNKPSRQFVKHSSISSDGRGSVVLTERSSVNNLASKESCNDNRQGGWISPFLEGLCKYLSFSKLKVKADLKQGDLLNSSNLVCSLSFDRDGEFFATAGVNRKIKVFGYDSIVNEDRDIHYPVVEMASRSKLSSVCWNRYIKSQIASSNFEGVVQVWDVTRSQVVTEMGEHERRVWSIDFSSADPTILASGSDDGSVKLWSINQAILFLHLVDVSFETKRTTGISIGTIRTKANVCCVQFPVDSGRSLAFGSADHKIYYYDMRNIRVPLCTFTGHNKTVSYVKYIDSSTLVSASTDNTLKLWDLSMCTSRVVDSPVQSFTGHMNIKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSYKFQMDPLSNHEMDDSAQFISSVCWRGQSSSLVAANSTGHIKILEMV 910
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31231858 31240848 - ClCG11G018070.2 Cla11g01762 285584

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01762 910 Gene3D - 557 910 IPR015943 GO:0005515
Cla11g01762 910 SMART WD40_4 664 704 IPR001680 GO:0005515
Cla11g01762 910 SMART WD40_4 725 764 IPR001680 GO:0005515
Cla11g01762 910 SMART WD40_4 768 806 IPR001680 GO:0005515
Cla11g01762 910 SMART WD40_4 869 908 IPR001680 GO:0005515
Cla11g01762 910 SMART WD40_4 622 661 IPR001680 GO:0005515
Cla11g01762 910 SMART WD40_4 815 854 IPR001680 GO:0005515
Cla11g01762 910 SMART WD40_4 576 611 IPR001680 GO:0005515
Cla11g01762 910 Coils Coil 347 367 - -
Cla11g01762 910 ProSitePatterns Trp-Asp (WD) repeats signature. 793 807 IPR019775 -
Cla11g01762 910 Gene3D Transferase(Phosphotransferase) domain 1 48 297 - -
Cla11g01762 910 PANTHER PROTEIN SPA1-RELATED 3 335 910 - -
Cla11g01762 910 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 671 706 - -
Cla11g01762 910 MobiDBLite consensus disorder prediction 424 445 - -
Cla11g01762 910 ProSiteProfiles Trp-Asp (WD) repeats profile. 671 706 IPR001680 GO:0005515
Cla11g01762 910 SUPERFAMILY Protein kinase-like (PK-like) 47 294 IPR011009 -
Cla11g01762 910 ProSiteProfiles Trp-Asp (WD) repeats profile. 775 808 IPR001680 GO:0005515
Cla11g01762 910 PANTHER PROTEIN SPA1-RELATED 2 15 293 IPR044630 GO:0009640
Cla11g01762 910 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 775 808 - -
Cla11g01762 910 SUPERFAMILY WD40 repeat-like 580 907 IPR036322 GO:0005515
Cla11g01762 910 PRINTS G protein beta WD-40 repeat signature 793 807 IPR020472 -
Cla11g01762 910 PRINTS G protein beta WD-40 repeat signature 691 705 IPR020472 -
Cla11g01762 910 PRINTS G protein beta WD-40 repeat signature 648 662 IPR020472 -
Cla11g01762 910 Pfam WD domain, G-beta repeat 771 806 IPR001680 GO:0005515
Cla11g01762 910 Pfam WD domain, G-beta repeat 669 704 IPR001680 GO:0005515
Cla11g01762 910 PANTHER PROTEIN SPA1-RELATED 3 15 293 - -
Cla11g01762 910 PANTHER PROTEIN SPA1-RELATED 2 335 910 IPR044630 GO:0009640
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01762 - - - csv:101205812 1560.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00199 Cla-Chr1:1980313 Cla11g01762 Cla-Chr11:31231858 1.58E-12 dispersed
Cla02g01772 Cla-Chr2:32710804 Cla11g01762 Cla-Chr11:31231858 2.79E-108 dispersed
Cla09g01246 Cla-Chr9:17164636 Cla11g01762 Cla-Chr11:31231858 2.61E-48 dispersed
Cla11g01762 Cla-Chr11:31231858 Cla11g01323 Cla-Chr11:26720259 2.96E-11 dispersed
Cla11g01762 Cla-Chr11:31231858 Cla02g00493 Cla-Chr2:4880642 8.82E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g218 . . . Bda09g00507 . . . Bma13g00954 . . . Cma09g00865 . . . Cpe06g00688 Cpe02g00702 Bhi09g03428 Tan01g4394 . . . Mch11g1069 . Cla11g01762 Cam11g1829 Cec11g1849 Cco11g1856 Clacu11g1989 Cmu11g1798 Cre11g2206 . . . . . Csa04g02344 Chy07g00076 . . . . . Bpe11g00483 . . Bma14g00239 . . Cmo09g00854 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003437 3 3 1 2 3 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 3 2 4 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01762 Cla_Chr11 FPKM 7.266218 8.235972 14.214321 15.35166 5.142519 5.06126 4.637224 21.76791 24.687794 21.322708