Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01764 ATGATCAAACGGGTTTCCAAAATGCTAAAAAACAAAGAGACAATCTCACTTGATGTGATTGATGTTGACGAAGATGAAGCTTCCGATAGTGCCATGTATATTCACCACAAGTTTGACGCAAATGACAAAGGAAAGGGTATATATCACCATAGTGATCATCAGTTGAAGAAAACATTGGGTAGCCATTCATTTAATCCAGATGTGGAAATCCTAGAGAGTACAAATGAAGTTGAATCTAATTTTCCCTCAGCATCACATAATTTGATTGACCTAGACAATCCTTGCTCTTATTCATCAAATGAAGATGACGACTGGATAGGATTTGATGAAATCATGGATGTGGATGCATATTCAGCTTTGCAAGCCCATTTTGATCATATGGATATTCCTCCTGATATTGAAGCACCGATACCTTGGCTGCCTCAGGATCAAAATGGAAACAAGACCAACATTGAAACTAGCAGAACCTCATGGTCATCATTTGCAGAACCTCAAAGCGTATCAGGTTCTGTTAATCATCTAGGAACATCAACTGGTCAAGTTCAGCTGAATGAAGCTTTATCAAATAGCCTACACTTGCCGGCTGACGTTGGTGTTCTGAATCATCTTGATCATTTTGCTTCGTTTCCTTCACACGATGTTCAACCTAATAAGAAACCAGCTGCATCCCGCTACAGGGACAAATCCGAGGTTAGTCACTTAAATTCTTTACTTGGTATTGATGCAGCTAAATCCCGGTGGTTTTTGGACCCATTTAAGCGTAAAAAGAAGCTACATGGTTCAAATAACATTTCTATTAACCCGTTGGATGCAATGAAGCTCCATAATGGAGGTGAGACATCTGATACATCCGACAGTGTAAAGAAGCAAGTCAGTTCACATAATATGTCCCAGCCAAACTTCCAAACATATGTGGACTTCTTTGATCCGGAAGCAGGACAATCTATGCCATATTGGCCTGAATATGCGAAAATGAAAAACAAGGAGCCATTTTTCCCCCCTCATATGGCTTCAGGTCTTTATGGGCCGTTTAATACTCTTGTTCCTCCTACTCTTGGAGAAGTTGTAGATATGCCATGGGTTCAGGGTTCCACCCAAAATCTTCCAAATTTTGCTCAAGGTGACTCGATAAGCATAACAATTTCACCTGCAGACATGGATAAATTCTTGCAGAACTTTGAGCAATTTAAACAATTTGATACTGTTGACGATCATTCTGACCATCACTATACTAGCAAAGGTTCTAGCATGAACCAGGGGTCAAAGAAATGGACAAAGAAAATTCAGGACGACTGGAAGATCCTGCAAAATGATTTACCTGAAACTATATTTGTTAGGGTATATGAGTCAAGAATGGATCTTATGCGGGCTGTCATCATTGGAGCACAGGGTACTCCATATCATGATGGACTATTTTTCTTTGACATATTTTTCCCTAATCGTTATCCGGACATACCGCCAATTTCTGACAGAATGTTTTCTCAAATGCAGCAAGTTTATTATCACTCTAAGGGCCTTCGACTTAACCCGAACTTGTATAATTGTGGGAAAGTATGTCTAAGTCTGCTTAACACCTGGCGTGGCAATGGAAATGAGAATTGGGTTCCTGCCATGTCAACTATGCTTCAGGTTCTTGTCTCTATCCAAGGGTTGATCTTGAATACAAAGCCCTACTTTAACGAGCCCGGGTCTCAACTGTATAATGAGGAGACGTACATCCTATCTATTAGGACCATGTTGTTTATCATCAGGAGGCCACCAAAGCCTCTTAGTAGGTTGAATGTAGTATCAAGAGATAGTGTGATCTTAGAATTCAATGATACAGTTGCACAACCAAATGGAACAGATTTATTCAATAACTTAAGACTAGAATATCTTCTGCTGCAGCATTTTGAGGATTTTGTTAGGGGACATTTCTACAAAAGGGCTCATGATATTCTGGTGGCATGCAAAGCATATATAAATGGTGCTCAGGTGGGATCTCTAGTTGAAGGCGGGGTTCAAGATCTGGAGCTGAGCGACAAGAGCTGCTCAGACAATTTTAAGCAATCCGTGACCCATCTTTTAAGTCAGCTTGTTGAGGCTTTTAAGGGAATTGGAGTCAGTGACTGCGATAAGTACCTGCAACCGCTACCACCGCCCGTATCAAATGCAAGGAAGCGATCAGGTAGGCACAGTAAAGCTCAGTTAGAATAG 2196 40.66 MIKRVSKMLKNKETISLDVIDVDEDEASDSAMYIHHKFDANDKGKGIYHHSDHQLKKTLGSHSFNPDVEILESTNEVESNFPSASHNLIDLDNPCSYSSNEDDDWIGFDEIMDVDAYSALQAHFDHMDIPPDIEAPIPWLPQDQNGNKTNIETSRTSWSSFAEPQSVSGSVNHLGTSTGQVQLNEALSNSLHLPADVGVLNHLDHFASFPSHDVQPNKKPAASRYRDKSEVSHLNSLLGIDAAKSRWFLDPFKRKKKLHGSNNISINPLDAMKLHNGGETSDTSDSVKKQVSSHNMSQPNFQTYVDFFDPEAGQSMPYWPEYAKMKNKEPFFPPHMASGLYGPFNTLVPPTLGEVVDMPWVQGSTQNLPNFAQGDSISITISPADMDKFLQNFEQFKQFDTVDDHSDHHYTSKGSSMNQGSKKWTKKIQDDWKILQNDLPETIFVRVYESRMDLMRAVIIGAQGTPYHDGLFFFDIFFPNRYPDIPPISDRMFSQMQQVYYHSKGLRLNPNLYNCGKVCLSLLNTWRGNGNENWVPAMSTMLQVLVSIQGLILNTKPYFNEPGSQLYNEETYILSIRTMLFIIRRPPKPLSRLNVVSRDSVILEFNDTVAQPNGTDLFNNLRLEYLLLQHFEDFVRGHFYKRAHDILVACKAYINGAQVGSLVEGGVQDLELSDKSCSDNFKQSVTHLLSQLVEAFKGIGVSDCDKYLQPLPPPVSNARKRSGRHSKAQLE 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31262144 31267687 + ClCG11G018090.1 Cla11g01764 285586

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01764 731 Gene3D Ubiquitin Conjugating Enzyme 386 701 IPR016135 -
Cla11g01764 731 SMART ubc_7 426 588 - -
Cla11g01764 731 MobiDBLite consensus disorder prediction 712 731 - -
Cla11g01764 731 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 423 602 IPR000608 -
Cla11g01764 731 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 629 710 - -
Cla11g01764 731 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 7 591 - -
Cla11g01764 731 SUPERFAMILY UBC-like 408 580 IPR016135 -
Cla11g01764 731 CDD UBCc 425 562 IPR000608 -
Cla11g01764 731 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 39-RELATED 629 710 - -
Cla11g01764 731 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 39-RELATED 7 591 - -
Cla11g01764 731 Pfam Ubiquitin-conjugating enzyme 428 557 IPR000608 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01764 K10581 UBE2O; ubiquitin-conjugating enzyme E2 O [EC:2.3.2.24] - csv:101219881 1054.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01178 Cla-Chr2:25250381 Cla11g01764 Cla-Chr11:31262144 2.23E-76 dispersed
Cla06g00424 Cla-Chr6:5184706 Cla11g01764 Cla-Chr11:31262144 9.07E-72 dispersed
Cla11g01764 Cla-Chr11:31262144 Cla05g00940 Cla-Chr5:9316029 3.40E-10 dispersed
Cla01g02248 Cla-Chr1:36416015 Cla11g01764 Cla-Chr11:31262144 1.08E-78 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g227 . . . . . . . Bma13g00958 . . Cma01g01207 Cma09g00867 Car01g01032 Car09g00780 Sed05g2568 Cpe06g00690 Cpe02g00703 Bhi09g03415 Tan01g4399 Cmetu07g0826 . . Mch11g1071 . Cla11g01764 Cam11g1830 Cec11g1851 Cco11g1858 Clacu11g1991 Cmu11g1800 Cre11g2207 Cone6ag0142 . Cone14ag1066 Cone15ag1055 . Csa04g02346 Chy07g00079 . . . . . . Bpe01g00429 . . . Cmo01g01260 Cmo09g00856 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004169 0 6 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 0 1 1 1 1 1 1 1 5 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01764 Cla_Chr11 FPKM 0.642991 0.949159 0.0 0.422833 2.366596 1.68424 1.568402 1.002602 1.670418 1.434265