Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01769 ATGAAGATGACACATGACAAGTTGTGTAGTTTGGAAGATGGTACAATGGAAAAAAAATTGTATAGAAATTGTGAAGAATATTGTGCTCTCAAGTATGCACTACATTACATTCATAATGTAAAACTTTGTCAAACGTGCACATCAAGCTTGTCACGTTCCAGAGAACCGGAGATTGTCGTACGAAGCCGTTCAGGTTCTTATTTAACGAGGATAAGTAGCGTAAACTACAAGCGGAAGAGCGGAAGGGGTCGATATTTTTGGACATCGATTCACTGTTTGATTGTTATTTATTTGAAACATATTACTCTTTCCATGGAACAAAACTACGCTGTACCTGAGGCATACTTAGAGTCTGAACAAGATGTCTCTCTCAAGCAAAACTGGAAATCTATCTCAACTCAGTCAACAGTCTCGGAAGAGGCGAGCGGTTGCTTTGATTGCAACATTTGCTTAGACTCAGCAGCCGACCCTGTTGTCACCCTCTGTGGTCACCTCTTTTGCTGGCCGTGCATTTACAAATGGCTTCATGTTCAAATCTCCAGCAATGAACCCGAAAACACCCAGAACTGCCCTGTTTGTAAGGCTAGCATTAGTCCCTCCTCTTTGGTTCCCCTCTATGGCCGTGGCACATCATCGAACTCAGATTCTGAATCCAAGAAGTCTCACTTGGGTATTGCTGTACCTCGAAGACCACCACCATCAATGAACACACCGCCCCATTCCATTGCAACCTCTTCATTGCATCCTAGCCAGGAGCTTCATCCAAATTATATCCGCTCGCCCTCACACCCAATCTATCACCAACAATATTTCCCCCAAGCCTACGGTGACTTTGCCTCATATGCACCGTCTTATCTCGGTAATGCCGTGATAACAAGCCTGCTAAACCCGACGATTGGGATGTTCGGAGAAACAGTTTTTACTAGAATTTTTGGTAGCGTGGATGGGAACTTATTGCCATACCCACCATACAACAACTCGATCCCAGGACATGCCAATACCAGAATGAGAAGACAGGAAATGCAGCTTGATAAGTCTCTTAATAGAGTTTCCATCTTTCTATTTTGCTGCTTTATTATCTGTCTTCTGTTATTTTGA 1098 43.17 MKMTHDKLCSLEDGTMEKKLYRNCEEYCALKYALHYIHNVKLCQTCTSSLSRSREPEIVVRSRSGSYLTRISSVNYKRKSGRGRYFWTSIHCLIVIYLKHITLSMEQNYAVPEAYLESEQDVSLKQNWKSISTQSTVSEEASGCFDCNICLDSAADPVVTLCGHLFCWPCIYKWLHVQISSNEPENTQNCPVCKASISPSSLVPLYGRGTSSNSDSESKKSHLGIAVPRRPPPSMNTPPHSIATSSLHPSQELHPNYIRSPSHPIYHQQYFPQAYGDFASYAPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPPYNNSIPGHANTRMRRQEMQLDKSLNRVSIFLFCCFIICLLLF 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31299272 31303277 + ClCG11G018130.2 Cla11g01769 285591

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01769 365 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 106 365 IPR045103 GO:0005783|GO:0006511|GO:0061630
Cla11g01769 365 ProSitePatterns Zinc finger RING-type signature. 162 171 IPR017907 -
Cla11g01769 365 ProSiteProfiles Zinc finger RING-type profile. 147 194 IPR001841 -
Cla11g01769 365 SMART ring_2 147 193 IPR001841 -
Cla11g01769 365 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3-LIKE 106 365 - -
Cla11g01769 365 CDD RING-HC_AtRMA_like 145 195 - -
Cla11g01769 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 208 IPR013083 -
Cla11g01769 365 SUPERFAMILY RING/U-box 127 200 - -
Cla11g01769 365 MobiDBLite consensus disorder prediction 208 246 - -
Cla11g01769 365 Pfam Zinc finger, C3HC4 type (RING finger) 147 193 IPR018957 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01769 K10666 RNF5; E3 ubiquitin-protein ligase RNF5 [EC:2.3.2.27] - csv:101206686 459.144
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01724 Cla-Chr2:32112801 Cla11g01769 Cla-Chr11:31299272 6.17E-58 dispersed
Cla07g00276 Cla-Chr7:3044717 Cla11g01769 Cla-Chr11:31299272 2.23E-46 dispersed
Cla08g01518 Cla-Chr8:27962138 Cla11g01769 Cla-Chr11:31299272 7.44E-30 dispersed
Cla10g01676 Cla-Chr10:32483683 Cla11g01769 Cla-Chr11:31299272 1.04E-22 dispersed
Cla05g00037 Cla-Chr5:478547 Cla11g01769 Cla-Chr11:31299272 7.02E-06 transposed
Cla05g01328 Cla-Chr5:17115607 Cla11g01769 Cla-Chr11:31299272 5.55E-06 transposed
Cla01g02246 Cla-Chr1:36404014 Cla11g01769 Cla-Chr11:31299272 3.79E-64 wgd
Cla11g01769 Cla-Chr11:31299272 Cla03g00561 Cla-Chr3:6282684 4.25E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g241 . . Bda07g00293 . . Bpe02g01905 Bma10g00503 . . . . Cma09g00872 Car01g01030 Car09g00785 Sed06g0407 Cpe06g00695 Cpe02g00705 Bhi09g03405 Tan01g4405 Cmetu07g2305 . Hepe01g1379 Mch11g1077 . Cla11g01769 . . Cco11g1863 . . Cre11g2213 Cone3ag1414 Cone10ag1343 . Cone12ag1456 Lsi04g01328 Csa04g02351 Chy07g00084 . . . . . Bpe11g00486 Bpe03g00833 . Bma14g00232 . Cmo01g01258 Cmo09g00861 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011682 1 1 0 2 2 0 2 1 0 0 1 0 0 1 1 2 0 3 2 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01769 Cla_Chr11 FPKM 33.043835 35.054691 33.20171 30.084606 22.394579 24.560041 24.220303 42.212234 39.689808 39.638401