Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01774 ATGGCTAAATGGCTTCATTCAACTACATTTGTGGACTTGCCTTCACATTTGATCTTAGAAGTTCTAACGTCCGGTCGGCTGAACACTCGTGATCTTGTTTGCTTGGAGTTGACTTGCAAGTTGTTTGGAGGGAGCCACGAGCTGTACCCTCTCAAGTTTCGGTCATTAGTTGATTTTGCAGCATTTCAATTATGTATATCACACAGCATTTATTCTGGAATGGGAGAGGATTCCCGAAAACAACTCTTTGATCGCTGTCGAGGGAAGTGGAAACGAGTTTTTCAGTTCTTGCAATTGGTGGAAAAATCTTCCACCGTCGTTGAGACCTCAGAAGGCAATGAATCATTTACTGTCTTCTGGAATCATTTACTATCTTCTGCATCAGAATGCATTACTCTGGACAATTCTATGCAGATTGCAACTGGAAGATATCATACATTACTGATCAGCAATGCATCAGTATACTCTTGTGGTTCCAGCTTATGTGGTGTTCTTGGTCATGGCTCTGAGACCACGCAATGTGTAACATTTACCCGAATTAATTTTCCACCTTCTATATACATTCAGCAAGTTTCTGCTTCTCACAATCATGCTGCTTTTGTCACACAGTCAGGACAGGTTTTCACCTGTGGAGATAATTCATCATTTTGTTGTGGGCACAGAGATACAAGCTGTCAAATCTTTAGACCTAGAATTGTTGAAGCATTAAATGGAATTCCTTGCAAGCAGGTCTCTGTGGGGCATAACTTTTCAGTATTTTTAACAAGACAAGGCCACGTCTATACATGTGGAACAAACTCATATGGTCAGCTTGGCCACGGTGATACTCTAGAGGGACCTACACCAAAGATTGTTCAACGGCTTGTGGAAATTGGATCTGTAATTCAGATTGCTGCTGGTCCAAGTTATGTACTGGCCGTAGTTAATGATGGGAGAGTATTCTCTTTTGGGTCAGGTTCTAATTTCTGCCTTGGCCATGGAGAGCAGCACAATGAATTCCAGCCTCGTGTCCTACAGACATTTAGATTGAAAGATATTCATGTTGTTTCTGTATCTGCTGGTGACGAGCATGCGGTGGCATTAGATTCAAACGGATTTGTATATACTTGGGGAAAAGGCTACTGTGGTGCCCTGGGCCATGGAGATGAGATTGATAAGACTATCCCTCAACCCTTGAACAGCCTTAAGAACCACCTTGCAGTGCAGGTATGTGCAAGAAAGAGGAAAACTTTTGTGTTGCTGGACACTGGTGTTGTTTATGGTTTTGGGTGGATGGGGTTTGGTAGCCTTGGATTTCCAGACAGAGGAGTATCTGACAAAGTCTTGAGGCCTCGATGCCTCAACAGCTTAAGGGTTCACCGTGTTTCTCAAATCAGCACCGGGCTGTATCACACTGTCATGGTTACTGAGAAAGGAAAAATATTCGGCTTTGGAGATAATGAAAGAGCACAACTGGGGCATGAATCTCTCAGAGGCTGCCTTGAACCCACTGAGATCTTTATCCAGGATTCAGAATCTGGGTAG 1524 43.24 MAKWLHSTTFVDLPSHLILEVLTSGRLNTRDLVCLELTCKLFGGSHELYPLKFRSLVDFAAFQLCISHSIYSGMGEDSRKQLFDRCRGKWKRVFQFLQLVEKSSTVVETSEGNESFTVFWNHLLSSASECITLDNSMQIATGRYHTLLISNASVYSCGSSLCGVLGHGSETTQCVTFTRINFPPSIYIQQVSASHNHAAFVTQSGQVFTCGDNSSFCCGHRDTSCQIFRPRIVEALNGIPCKQVSVGHNFSVFLTRQGHVYTCGTNSYGQLGHGDTLEGPTPKIVQRLVEIGSVIQIAAGPSYVLAVVNDGRVFSFGSGSNFCLGHGEQHNEFQPRVLQTFRLKDIHVVSVSAGDEHAVALDSNGFVYTWGKGYCGALGHGDEIDKTIPQPLNSLKNHLAVQVCARKRKTFVLLDTGVVYGFGWMGFGSLGFPDRGVSDKVLRPRCLNSLRVHRVSQISTGLYHTVMVTEKGKIFGFGDNERAQLGHESLRGCLEPTEIFIQDSESG 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31330699 31335977 + ClCG11G018180.1 Cla11g01774 285596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01774 507 PANTHER BNAA01G28890D PROTEIN 9 121 - -
Cla11g01774 507 Gene3D - 290 505 IPR009091 -
Cla11g01774 507 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 417 471 IPR000408 -
Cla11g01774 507 Pfam Regulator of chromosome condensation (RCC1) repeat 258 307 IPR000408 -
Cla11g01774 507 Pfam Regulator of chromosome condensation (RCC1) repeat 364 405 IPR000408 -
Cla11g01774 507 Pfam Regulator of chromosome condensation (RCC1) repeat 417 468 IPR000408 -
Cla11g01774 507 Pfam Regulator of chromosome condensation (RCC1) repeat 204 254 IPR000408 -
Cla11g01774 507 Pfam Regulator of chromosome condensation (RCC1) repeat 310 361 IPR000408 -
Cla11g01774 507 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 205 257 IPR000408 -
Cla11g01774 507 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 135 502 - -
Cla11g01774 507 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 351 361 IPR000408 -
Cla11g01774 507 PRINTS Chromosome condensation regulator RCC1 signature 348 361 IPR000408 -
Cla11g01774 507 PRINTS Chromosome condensation regulator RCC1 signature 367 383 IPR000408 -
Cla11g01774 507 PRINTS Chromosome condensation regulator RCC1 signature 458 474 IPR000408 -
Cla11g01774 507 PRINTS Chromosome condensation regulator RCC1 signature 312 328 IPR000408 -
Cla11g01774 507 PRINTS Chromosome condensation regulator RCC1 signature 474 488 IPR000408 -
Cla11g01774 507 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 9 121 - -
Cla11g01774 507 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 365 416 IPR000408 -
Cla11g01774 507 SUPERFAMILY RCC1/BLIP-II 130 435 IPR009091 -
Cla11g01774 507 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 311 364 IPR000408 -
Cla11g01774 507 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 258 310 IPR000408 -
Cla11g01774 507 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 458 468 IPR000408 -
Cla11g01774 507 Gene3D - 109 289 IPR009091 -
Cla11g01774 507 PANTHER BNAA01G28890D PROTEIN 135 502 - -
Cla11g01774 507 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 472 507 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01774 - - - csv:101207584 937.947
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02623 Cla-Chr5:37425096 Cla11g01774 Cla-Chr11:31330699 6.13E-15 dispersed
Cla11g00896 Cla-Chr11:15250279 Cla11g01774 Cla-Chr11:31330699 1.85E-19 dispersed
Cla11g01774 Cla-Chr11:31330699 Cla02g02221 Cla-Chr2:37363282 8.41E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g253 . Blo03g01540 . Bda09g00499 . . . . . . Cma01g01201 Cma09g00877 Car01g01026 Car09g00789 Sed04g3120 Cpe06g00700 Cpe02g00708 Bhi09g03400 Tan01g4411 Cmetu07g0621 . Hepe01g1375 Mch11g1083 . Cla11g01774 Cam11g1838 Cec11g1859 Cco11g1869 Clacu11g2000 Cmu11g1809 Cre11g2217 . . . . Lsi04g01323 Csa04g02357 Chy07g00086 . . . . . . . Bma07g01184 . . Cmo01g01255 Cmo09g00866 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004199 2 2 1 3 1 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 3 3 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01774 Cla_Chr11 FPKM 1.561741 1.511878 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0